Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0011087

Physical Location & Seq

Genomic Coordinates Reverse (-)

23134369 .. 23137900

Gene Structure 3532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG225300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCTGTTCTGGCAGCAAATTCTCACATTTTGTGTAGAGAAGTTCATCGCAGGGAGCATCAACAACAGTTTTGGAGCGCTGCAGGGGGCAGTTGTGTTTTGCCGAAATCTTCTGGGTTTGGTTTCTTCCATCGAAACAGAGACAGCAAGAAGATATTGAGAAGAGACTTGAAAGTAGAGGCCTTTTGGCCAGAGTCCAGACCCACTTTTGTAGAGATGGAACCTATAAACGACTCTGATCACCTTGATCATATATTAAGCCATGCTCAACAGCTCTCCCAGCCCATCGTTATTGATTGGTCTCTTTCATACTCTCACACTCTCTCCTACTACTTTTTTTTTTTTGTTTATCTAAATTTTATGGGATTGTTTTCCTGTTTCGATTTTGTTAGGATGGCAGCTTGGTGCCGCAAATGCATCTATTTGAAGCCCAAATTGGAGAAATTGGCTGCTGAATATGAAACCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

156

Amino Acids

18.39

Weight (kDa)

8.29

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06690 AT5G06690 AT5G06690 AT5G06690
fragaria_vesca	FvH4_6g22000
malus_domestica	MD12G1055400.v1.1 MD14G1054800.v1.1
prunus_persica	Prupe.7G079900_v2.0.a1
pyrus_communis	pycom12g04840
rosa_chinensis	RchiOBHm_Chr3g0479301
rosa_laevigata	RLG00000023585
rosa_multiflora	Rmu_sc0026945.1_g000002
rosa_roxburghii	Rroxscaffold_6G00402420
rosa_rugosa	Rorug03G0174200 Rorug03G0174200
rosa_samantha	Rh3AG225300 Rh3BG257800 Rh3CG253500 Rh3DG249700
rosa_wichuraiana	Rw3G020150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	405
AciI	CCGC	1 cut(s)	409
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	2 cut(s)	19, 355
AfeI	AGCGCT	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	172, 427
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	2 cut(s)	274, 401
AluI	AGCT	2 cut(s)	274, 401
Alw26I	GTCTC	3 cut(s)	135, 159, 306
Aor51HI	AGCGCT	1 cut(s)	79
AoxI	GGCC	2 cut(s)	180, 188
ApeKI	GCWGC	4 cut(s)	14, 80, 398, 449
ApoI	RAATTY	2 cut(s)	19, 355
AspLEI	GCGC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	405
BbvI	GCAGC	4 cut(s)	26, 67, 410, 436
BccI	CCATC	4 cut(s)	138, 211, 293, 388
BclI	TGATCA	2 cut(s)	238, 247
BcoDI	GTCTC	3 cut(s)	135, 159, 306
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	5 cut(s)	15, 81, 399, 409, 450
BlsI	GCNGC	5 cut(s)	16, 82, 400, 410, 451
BmiI	GGNNCC	2 cut(s)	222, 407
BmsI	GCATC	2 cut(s)	67, 426
BsaI	GGTCTC	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
BseGI	GGATG	1 cut(s)	399
BseXI	GCAGC	4 cut(s)	26, 67, 410, 436
BseYI	CCCAGC	1 cut(s)	279
BshFI	GGCC	2 cut(s)	182, 190
BshNI	GGYRCC	1 cut(s)	405
BsmAI	GTCTC	3 cut(s)	135, 159, 306
BsnI	GGCC	2 cut(s)	182, 190
Bso31I	GGTCTC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	238, 247
BspACI	CCGC	1 cut(s)	409
BspANI	GGCC	2 cut(s)	182, 190
BspLI	GGNNCC	2 cut(s)	222, 407
BspMAI	CTGCAG	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	306
BssMI	GATC	2 cut(s)	238, 247
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	241, 250
BstMAI	GTCTC	3 cut(s)	135, 159, 306
BstMBI	GATC	2 cut(s)	238, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 414
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	4 cut(s)	26, 67, 410, 436
BsuRI	GGCC	2 cut(s)	182, 190
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	399
CfoI	GCGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	8 cut(s)	182, 190, 261, 274, 283, 401, 430, 449
CviKI_1	RGCY	8 cut(s)	182, 190, 261, 274, 283, 401, 430, 449
DpnI	GATC	2 cut(s)	240, 249
DpnII	GATC	2 cut(s)	238, 247
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	306
Eco47III	AGCGCT	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	419
FaeI	CATG	1 cut(s)	266
FaiI	YATR	7 cut(s)	227, 252, 254, 264, 310, 362, 459
FatI	CATG	1 cut(s)	262
FbaI	TGATCA	2 cut(s)	238, 247
Fnu4HI	GCNGC	5 cut(s)	15, 81, 399, 409, 450
FokI	GGATG	1 cut(s)	406
Fsp4HI	GCNGC	5 cut(s)	15, 81, 399, 409, 450
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	5 cut(s)	15, 81, 399, 409, 450
GsaI	CCCAGC	1 cut(s)	283
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	182, 190
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	2 cut(s)	194, 233
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	198
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	83, 417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 414
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	78
Ksp22I	TGATCA	2 cut(s)	238, 247
Kzo9I	GATC	2 cut(s)	238, 247
LmnI	GCTCC	2 cut(s)	55, 75
LpnPI	CCDG	7 cut(s)	37, 69, 99, 204, 211, 293, 388
Lsp1109I	GCAGC	4 cut(s)	26, 67, 410, 436
LweI	GCATC	2 cut(s)	67, 426
MalI	GATC	2 cut(s)	240, 249
MboI	GATC	2 cut(s)	238, 247
MboII	GAAGA	4 cut(s)	102, 118, 163, 174
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	5 cut(s)	19, 355, 434, 443, 466
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	2 cut(s)	203, 227
MnlI	CCTC	1 cut(s)	172
Mox20I	TGGCCA	1 cut(s)	190
Mph1103I	ATGCAT	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	2 cut(s)	257, 469
Msp20I	TGGCCA	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	280, 414
NdeII	GATC	2 cut(s)	238, 247
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	2 cut(s)	222, 407
NsiI	ATGCAT	1 cut(s)	419
PceI	AGGCCT	1 cut(s)	182
PkrI	GCNGC	5 cut(s)	16, 82, 400, 410, 451
PleI	GAGTC	2 cut(s)	202, 227
PpsI	GAGTC	2 cut(s)	202, 227
PspFI	CCCAGC	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	222, 407
PstI	CTGCAG	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	257, 469
SatI	GCNGC	5 cut(s)	15, 81, 399, 409, 450
Sau3AI	GATC	2 cut(s)	238, 247
SchI	GAGTC	2 cut(s)	203, 227
SetI	ASST	4 cut(s)	226, 246, 276, 403
SfaNI	GCATC	2 cut(s)	67, 426
SfcI	CTRYAG	1 cut(s)	81
Sse9I	AATT	5 cut(s)	19, 355, 434, 443, 466
SseBI	AGGCCT	1 cut(s)	182
SsiI	CCGC	1 cut(s)	409
StuI	AGGCCT	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	133, 381
TasI	AATT	5 cut(s)	19, 355, 434, 443, 466
TauI	GCSGC	1 cut(s)	411
Tru1I	TTAA	2 cut(s)	257, 469
Tru9I	TTAA	2 cut(s)	257, 469
TseI	GCWGC	4 cut(s)	14, 80, 398, 449
TspDTI	ATGAA	2 cut(s)	35, 297
XapI	RAATTY	2 cut(s)	19, 355
Zsp2I	ATGCAT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.