Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0011087

Physical Location & Seq

Genomic Coordinates Reverse (-)

6248088 .. 6249965

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1055400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCTGTTTTGGCAGCCAATTCTCACGTTCTGTGTAGCAGAGAAGTCCATCACAGAGAGCAACGGCCACAGTTCTGGAGCAACGGCGGCGGTTTCTTGCTGTTGCCAAAAGCTTCTGGATTAGGGTTTTTGAACAGAAACAGAGATGGGAACAGGACGTTGAAGATGGACTTGAAAGTTGAGGCCTTTTGGGGCACGGATACCTCGAGACCCACTGTTGTGGAGATGGAAGCAATCAACGACTGTGATCAGCTTGACCAGATTCTCAGCCAGGCACAGGAGAGATCCCAGCCCGTTGTCATTGATTGGATGGCATCTTGGTGCCGCAAATGCATATATTTGAAGCCTAAATTGGAGAAGTTGGCTGCTGAATATGACACCAAGATCAAATTCTACTATGTTGATGTCAACAAAGTACCTCAAGCTCTAGTGAAGCGGGGAAACATCTCTAAAATGCCAACAATTCAGGTATGGAAAGATGGAGAGTTTAAAGCCGAAGTGATTGGGGGACATAAAGCATGGCTTGTGCTTGAAGAAGTGAGAGAAATGCTCCAAAACTTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

189

Amino Acids

21.61

Weight (kDa)

8.64

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	93 - 172	1e-16	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06690 AT5G06690 AT5G06690 AT5G06690
fragaria_vesca	FvH4_6g22000
malus_domestica	MD12G1055400.v1.1 MD14G1054800.v1.1
prunus_persica	Prupe.7G079900_v2.0.a1
pyrus_communis	pycom12g04840
rosa_chinensis	RchiOBHm_Chr3g0479301
rosa_laevigata	RLG00000023585
rosa_multiflora	Rmu_sc0026945.1_g000002
rosa_roxburghii	Rroxscaffold_6G00402420
rosa_rugosa	Rorug03G0174200 Rorug03G0174200
rosa_samantha	Rh3AG225300 Rh3BG257800 Rh3CG253500 Rh3DG249700
rosa_wichuraiana	Rw3G020150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	321
AciI	CCGC	4 cut(s)	87, 90, 325, 436
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	389
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	5 cut(s)	133, 163, 175, 343, 533
AjnI	CCWGG	1 cut(s)	270
AjuI	GAANNNNNNNTTGG	4 cut(s)	335, 367, 374, 406
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	3 cut(s)	113, 253, 425
AluI	AGCT	3 cut(s)	113, 253, 425
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	279
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	2 cut(s)	65, 183
ApeKI	GCWGC	2 cut(s)	14, 365
ApoI	RAATTY	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	26, 352
BccI	CCATC	6 cut(s)	57, 140, 160, 220, 304, 473
BceAI	ACGGC	2 cut(s)	80, 100
BciT130I	CCWGG	1 cut(s)	272
BciVI	GTATCC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	4 cut(s)	15, 88, 325, 366
BlsI	GCNGC	4 cut(s)	16, 89, 326, 367
Bme1390I	CCNGG	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	323
BplI	GAGNNNNNCTC	2 cut(s)	534, 566
BpmI	CTGGAG	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	272
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	280
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	26, 352
BseYI	CCCAGC	1 cut(s)	288
BshFI	GGCC	2 cut(s)	67, 185
BshNI	GGYRCC	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	522
BsnI	GGCC	2 cut(s)	67, 185
Bso31I	GGTCTC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	247, 284, 384
BspACI	CCGC	4 cut(s)	87, 90, 325, 436
BspANI	GGCC	2 cut(s)	67, 185
BspCNI	CTCAG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	202
BssMI	GATC	3 cut(s)	247, 284, 384
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	3 cut(s)	72, 217, 245
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	315
BstKTI	GATC	3 cut(s)	250, 287, 387
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	3 cut(s)	247, 284, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 330
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	2 cut(s)	26, 352
BstX2I	RGATCY	1 cut(s)	284
BstXI	CCANNNNNNTGG	2 cut(s)	75, 220
BstYI	RGATCY	1 cut(s)	284
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	67, 185
BtsCI	GGATG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	1 cut(s)	519
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	3 cut(s)	249, 286, 386
DpnII	GATC	3 cut(s)	247, 284, 384
DraI	TTTAAA	1 cut(s)	490
EaeI	YGGCCR	1 cut(s)	65
Eco147I	AGGCCT	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	202
Eco88I	CYCGRG	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	335
FaeI	CATG	1 cut(s)	522
FaiI	YATR	7 cut(s)	335, 337, 375, 399, 472, 513, 520
FalI	AAGNNNNNCTT	4 cut(s)	155, 187, 507, 539
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	1 cut(s)	518
FauI	CCCGC	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	4 cut(s)	15, 88, 325, 366
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	4 cut(s)	15, 88, 325, 366
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	4 cut(s)	15, 88, 325, 366
GsaI	CCCAGC	1 cut(s)	292
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	2 cut(s)	67, 185
Hin1II	CATG	1 cut(s)	522
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188III	TCNNGA	3 cut(s)	76, 117, 207
Hpy8I	GTNNAC	1 cut(s)	409
HpyCH4III	ACNGT	3 cut(s)	72, 217, 245
HpyCH4IV	ACGT	2 cut(s)	27, 158
HpyCH4V	TGCA	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 330
HpyF3I	CTNAG	1 cut(s)	266
HpySE526I	ACGT	2 cut(s)	27, 158
Hsp92II	CATG	1 cut(s)	522
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	247, 284, 384
LmnI	GCTCC	2 cut(s)	78, 555
LpnPI	CCDG	9 cut(s)	61, 102, 139, 257, 263, 272, 284, 302, 452
Lsp1109I	GCAGC	2 cut(s)	26, 352
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	2 cut(s)	27, 158
MalI	GATC	3 cut(s)	249, 286, 386
MboI	GATC	3 cut(s)	247, 284, 384
MboII	GAAGA	2 cut(s)	175, 545
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	4 cut(s)	19, 350, 389, 462
MnlI	CCTC	3 cut(s)	175, 214, 429
Mph1103I	ATGCAT	1 cut(s)	335
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	2 cut(s)	218, 319
MspR9I	CCNGG	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	87, 330
NdeII	GATC	3 cut(s)	247, 284, 384
NlaIII	CATG	1 cut(s)	522
NlaIV	GGNNCC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	335
OliI	CACNNNNGTG	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	4 cut(s)	16, 89, 326, 367
Psp6I	CCWGG	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
RseI	CAYNNNNRTG	2 cut(s)	218, 319
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	4 cut(s)	15, 88, 325, 366
Sau3AI	GATC	3 cut(s)	247, 284, 384
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	8 cut(s)	30, 115, 161, 206, 255, 421, 427, 471
SfaNI	GCATC	1 cut(s)	323
Sfr274I	CTCGAG	1 cut(s)	205
SlaI	CTCGAG	1 cut(s)	205
SmiMI	CAYNNNNRTG	2 cut(s)	218, 319
SmlI	CTYRAG	2 cut(s)	205, 420
SmoI	CTYRAG	2 cut(s)	205, 420
Sse9I	AATT	4 cut(s)	19, 350, 389, 462
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	4 cut(s)	87, 90, 325, 436
SspMI	CTAG	1 cut(s)	428
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	270
TaaI	ACNGT	3 cut(s)	72, 217, 245
TaiI	ACGT	2 cut(s)	30, 161
TaqI	TCGA	1 cut(s)	206
TasI	AATT	4 cut(s)	19, 350, 389, 462
TauI	GCSGC	2 cut(s)	90, 327
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	2 cut(s)	14, 365
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	220
XapI	RAATTY	1 cut(s)	389
XhoI	CTCGAG	1 cut(s)	205
XspI	CTAG	1 cut(s)	428
Zsp2I	ATGCAT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.