Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011087

Physical Location & Seq

Genomic Coordinates Forward (+)

25645277 .. 25646319

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023585

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCTGTTCTGGCAGCAAATTCTCACATTTTCTGTAGAGAAGTTCATCGCAGGGAGCATCAACAACAGTTTTGGAGCGCTGCAGGGGGCAGTTGTGTTCTGCCGAAATCTTCTGGGTTTGGTTTCTTCCATAGAAACAGAGACAGCAAGAAGATATTGAGAAGAGACTTGAAAGTAGAGGCCTTTTGGCCAGAGTCCAGACCCACTTTTGTAGAGATGGAACCAATAAGCGACTCTGATCACCTTGATCATATATTAAGCCATGCTCAACAGCTCTCCCAGCCCATCGTTATTGATTGGGATATTACATTTGCATATAAAAAACTCCTTTACATGTTGGCCAAATTCTATTATGTAGATGTCAACAAAGTGCCTCAAACTCTAGTGAAACGCGGAAACATCTCTAAAATGCCAACCATTCAGGTGTGGAAAGATGGAGAGTTCAAGGAAGAAGTGATTGGAGGTCATAAAGCATGGCTTGTGATTGATGAAGTGCGAGATATGATCCAAAAATTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

174

Amino Acids

20.22

Weight (kDa)

8.85

Isoelectric Point (pI)

61.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06690 AT5G06690 AT5G06690 AT5G06690
fragaria_vesca	FvH4_6g22000
malus_domestica	MD12G1055400.v1.1 MD14G1054800.v1.1
prunus_persica	Prupe.7G079900_v2.0.a1
pyrus_communis	pycom12g04840
rosa_chinensis	RchiOBHm_Chr3g0479301
rosa_laevigata	RLG00000023585
rosa_multiflora	Rmu_sc0026945.1_g000002
rosa_roxburghii	Rroxscaffold_6G00402420
rosa_rugosa	Rorug03G0174200 Rorug03G0174200
rosa_samantha	Rh3AG225300 Rh3BG257800 Rh3CG253500 Rh3DG249700
rosa_wichuraiana	Rw3G020150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	393
AciI	CCGC	1 cut(s)	393
AclWI	GGATC	1 cut(s)	499
AcoI	YGGCCR	2 cut(s)	188, 339
AcsI	RAATTY	3 cut(s)	19, 344, 512
AfeI	AGCGCT	1 cut(s)	79
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	2 cut(s)	172, 445
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
Alw26I	GTCTC	2 cut(s)	135, 159
AlwI	GGATC	1 cut(s)	499
Aor51HI	AGCGCT	1 cut(s)	79
AoxI	GGCC	3 cut(s)	180, 188, 339
ApeKI	GCWGC	2 cut(s)	14, 80
ApoI	RAATTY	3 cut(s)	19, 344, 512
AspLEI	GCGC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	233
BalI	TGGCCA	2 cut(s)	190, 341
BbvI	GCAGC	2 cut(s)	26, 67
BccI	CCATC	3 cut(s)	211, 293, 428
BclI	TGATCA	2 cut(s)	238, 247
BcoDI	GTCTC	2 cut(s)	135, 159
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	2 cut(s)	34, 81
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	2 cut(s)	15, 81
BlsI	GCNGC	2 cut(s)	16, 82
BmiI	GGNNCC	1 cut(s)	222
BmsI	GCATC	1 cut(s)	67
BseXI	GCAGC	2 cut(s)	26, 67
BseYI	CCCAGC	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	3 cut(s)	182, 190, 341
BsmAI	GTCTC	2 cut(s)	135, 159
BsnI	GGCC	3 cut(s)	182, 190, 341
Bsp143I	GATC	3 cut(s)	238, 247, 504
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	3 cut(s)	182, 190, 341
BspFNI	CGCG	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	1 cut(s)	499
BssMI	GATC	3 cut(s)	238, 247, 504
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	3 cut(s)	241, 250, 507
BstMAI	GTCTC	2 cut(s)	135, 159
BstMBI	GATC	3 cut(s)	238, 247, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNSI	RCATGY	1 cut(s)	337
BstSFI	CTRYAG	2 cut(s)	34, 81
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	26, 67
BsuRI	GGCC	3 cut(s)	182, 190, 341
BtgZI	GCGATG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	80
CviAII	CATG	3 cut(s)	263, 334, 474
CviJI	RGCY	7 cut(s)	182, 190, 261, 274, 283, 341, 478
CviKI_1	RGCY	7 cut(s)	182, 190, 261, 274, 283, 341, 478
DpnI	GATC	3 cut(s)	240, 249, 506
DpnII	GATC	3 cut(s)	238, 247, 504
EaeI	YGGCCR	2 cut(s)	188, 339
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	182
Eco47III	AGCGCT	1 cut(s)	79
FaeI	CATG	3 cut(s)	266, 337, 477
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FatI	CATG	3 cut(s)	262, 333, 473
FbaI	TGATCA	2 cut(s)	238, 247
Fnu4HI	GCNGC	2 cut(s)	15, 81
Fsp4HI	GCNGC	2 cut(s)	15, 81
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	2 cut(s)	15, 81
GsaI	CCCAGC	1 cut(s)	283
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	182, 190, 341
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	266, 337, 477
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	2 cut(s)	194, 233
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	1 cut(s)	364
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	83, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
Hsp92II	CATG	3 cut(s)	266, 337, 477
HspAI	GCGC	1 cut(s)	78
Ksp22I	TGATCA	2 cut(s)	238, 247
Kzo9I	GATC	3 cut(s)	238, 247, 504
LmnI	GCTCC	2 cut(s)	55, 75
LpnPI	CCDG	7 cut(s)	37, 69, 99, 204, 211, 293, 407
Lsp1109I	GCAGC	2 cut(s)	26, 67
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	383
MalI	GATC	3 cut(s)	240, 249, 506
MboI	GATC	3 cut(s)	238, 247, 504
MboII	GAAGA	5 cut(s)	102, 118, 163, 174, 461
MlsI	TGGCCA	2 cut(s)	190, 341
MluCI	AATT	3 cut(s)	19, 344, 512
MluNI	TGGCCA	2 cut(s)	190, 341
MlyI	GAGTC	2 cut(s)	203, 227
MnlI	CCTC	3 cut(s)	172, 384, 455
Mox20I	TGGCCA	2 cut(s)	190, 341
MscI	TGGCCA	2 cut(s)	190, 341
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	422
Msp20I	TGGCCA	2 cut(s)	190, 341
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeII	GATC	3 cut(s)	238, 247, 504
NlaIII	CATG	3 cut(s)	266, 337, 477
NlaIV	GGNNCC	1 cut(s)	222
NspI	RCATGY	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	182
PciI	ACATGT	1 cut(s)	333
PkrI	GCNGC	2 cut(s)	16, 82
PleI	GAGTC	2 cut(s)	202, 227
PpsI	GAGTC	2 cut(s)	202, 227
PscI	ACATGT	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	422
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	2 cut(s)	15, 81
Sau3AI	GATC	3 cut(s)	238, 247, 504
SchI	GAGTC	2 cut(s)	203, 227
SetI	ASST	4 cut(s)	246, 276, 426, 466
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	2 cut(s)	34, 81
SmiMI	CAYNNNNRTG	1 cut(s)	422
Sse9I	AATT	3 cut(s)	19, 344, 512
SseBI	AGGCCT	1 cut(s)	182
SsiI	CCGC	1 cut(s)	393
SspMI	CTAG	1 cut(s)	383
StuI	AGGCCT	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	69
TasI	AATT	3 cut(s)	19, 344, 512
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TseI	GCWGC	2 cut(s)	14, 80
TspDTI	ATGAA	2 cut(s)	35, 504
XapI	RAATTY	3 cut(s)	19, 344, 512
XceI	RCATGY	1 cut(s)	337
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.