Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009966

Physical Location & Seq

Genomic Coordinates Reverse (-)

14714616 .. 14722410

Gene Structure 7795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0174200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2397 bp

ATGGATTTCACGGCGCTGCGGACGGCTGTGGAGGAGGCGGAGCTAGTCGACGCCCACGCCCACAACCTCGTCGCCACCGACTCCTCCTTCCCCTTCATCAGTGCCTTCTCGGAAGCGAACGCCGAGGCCTTATCCTACGCACCCCACTCCCTCTCCTTCAAGAGAAGTTTGAAGGAGGTTGCGGAGCTGTACGGGTGTGAGAAGTCCTTGGATGCGGTTGAGGAGCATCGGAGAGTCGCCGGATTGGAGGCGATTAGCTCCAGATGCTTTGAAGCTGCGAGAATCTCTGCGTTACTTTTTGATGATGGACTGAGGCTGGACAAAATGCATGACATAGATTGGCACAAGAGTTTCGCGCCTCTGGTTGGGAGAATTCTGAGGATTGAGTCTCTAGCTGAGCAGATTCTTAGTGAGGAGTTGCCTAGTGGATCTTCTTGGACATTGGATGTGTTCACTGAAGCATTTGTTGGAAAGTTGAAGTCATTTGCTGATAACATTTTTGGCTTGAAAAGTATAGCTGCATATCGCAGCGGTCTGGAAATTAGTACACATGTCACTAGGAAAGATGTTGAGGAAGGTCTTTCTGAGGTTATACAGGCTGGAAAGCCTGTTCGCGTATCAAATAAAAGTTTTATCGACTATATTTTCACTCGTAGTTTGGAGGTTGCTCTACTTTTTGACTTGCCAATGCAGATACATACAGGTTTTGGTGACAAAGATTTGGACTTGAGGCTCTCCAATCCCCTTCATCTCCGGGCTGTGCTTGAGGACAAGAGATTTTCTAAAAGCCGCATTGTTCTTTTACATGCATCCTACCCGTTTTCAAAGGAAGCATCATATCTAGCCTCTGTTTATCCCCAGGTCTACCTCGACTTTGGCTTGGCTATACCCAAGCTCAGTGTCCACGGGATGGTATCTTCACTAAAAGAACTTTTGGAGCTTGCTCCAATTAAGAAGGTCATGTTCAGCACTGATGGATATGCATTTCCTGAAACTTTCTACTTAGGTGCAAAAAAGGCACGTGAAGTTGTCTTTTCAGTTCTATGTGATGCCTGTGCCGATGGTGATCTCTCAATTCCGGAAGCTATTGAGGCTGCTAAAGACATCTTTTCACAAAATGCAGTTCAGTTTTACAACATTGATCGTGCTGTCAAATCTTCTGGTTCAGCCAATAGTGTATCCTCCAACTTTGTGAAGGTGAAGAGTAATGACTCGGAAAATCATGTCTCACTTGTTCGTGTTTTCTGGGCTGATGCATCAGGACAACAAAGATGTCGTGTTGTTCCTGCTAAGCGGTTCAATGACATCGTTACAAAAAATGGCATTGGTTTGACTTTTGCTTGTATGGGAATGACTTCTTTCACTGATGGTCCAGCTGATGAGACTAATTTGACTGGAGTGGGTGAGATCAGACTCATGCCTGATTTATCAACTAAACGGAGAATTCCATGGGTAGAACAAGAGGAAATGGTTTTGGCCAACATGCATCTTAAACCAGGTGAAGCATGGGAATACTGCCCAAGAGAGGCCTTACGGAGGGTTTCAAAAATATTGAAAGATGAATTCAATTTGGTAATGAATGCAGGATTTGAAAATGAATTTTTTCTCTTGAAGAGTATACTAAGGGACGGGAAAGAAGAATGGGTACCATTTGACTCAACACCCTACTGTTCCCCATCATCATATGATGCTGCTTCCTCTTTGTTTCACGAAGTTCTTGCTGCTCTCCAGTCCTTGAATATTACTGTAGAACAGTTACATGCAGAAAGTGGGAAAGGTCAATTTGAGGTGGTTCTAGGGCACACAGCTTGCCAGCATGCTGCTGACAACTTGATTTATACCCGTGAAGTTATTAGGGCCATTGCAAGGAAACACGGATTGTTGGCAACCTTTGTCCCAAAGTATGCACTAGATGAGATTGGCTCTGGAGCCCATGTACATCTCAGTTTGTGGCAGAATGGCAAAAATGTATTCATGGCATCTGGTGGATCCTCTCAGCATGGAATGTCCAAGGTTGGGGAGGAATTTATGGCAGGGGTTTTATATCATCTCCCAGCAATTTTGGCATTTACAGCTCCAATTCCAAATAGTTACGACCGGATACAACCTAATACTTGGAGTGGAGCATACAAGTGCTGGGGAAAAGAAAACAGGGAAGCTGCATTAAGAACTGCATGCCCACCTGGAATTCAAGCTGGTCTGGTGAGCAACTTTGAGATCAAGTCATTTGATGGGTGTGCAAATCCACACTTGGGCTTGGCTGCAATACTAGCTGCTGGCATTGATGGTCTTAGACTCTTAGGAGACATCTTTGTCTCCCTGAACCTATTGATACAAATCCTTCTAGCCTTGAAGGAGAACTACAAAGGTTACCAACTTCACTTTTGGAGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008047 GO:0008150 GO:0030234 GO:0031072 GO:0032781 GO:0043085 GO:0043462 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0051879 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AHSA1 Aha1_N

Protein Analysis

798

Amino Acids

88.19

Weight (kDa)

5.85

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidohydro_2	PF04909	226 - 379	3.2e-14	Amidohydrolase
Gln-synt_N_2	PF16952	399 - 484	3.2e-07	Glutamine synthetase N-terminal domain
Gln-synt_C	PF00120	505 - 765	2.2e-76	Glutamine synthetase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12050 AT3G12050
fragaria_vesca	FvH4_6g21990
malus_domestica	MD12G1055300.v1.1 MD14G1054700.v1.1
prunus_persica	Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1
pyrus_communis	pycom12g04830 pycom14g04520
rosa_chinensis	RchiOBHm_Chr3g0479291
rosa_laevigata	RLG00000023586
rosa_multiflora	Rmu_sc0015378.1_g000002 Rmu_sc0026945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402430
rosa_rugosa	Rorug03G0174200
rosa_samantha	Rh3AG225200 Rh3BG257700 Rh3CG253400 Rh3DG249600
rosa_wichuraiana	Rw3G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2312
Acc65I	GGTACC	1 cut(s)	1645
AccB1I	GGYRCC	1 cut(s)	1645
AccB7I	CCANNNNNTGG	1 cut(s)	910
AccI	GTMKAC	3 cut(s)	48, 864, 1618
AccII	CGCG	2 cut(s)	356, 615
AccIII	TCCGGA	1 cut(s)	1078
AciI	CCGC	7 cut(s)	19, 38, 182, 215, 531, 790, 1294
AclWI	GGATC	3 cut(s)	436, 1983, 1996
AcoI	YGGCCR	1 cut(s)	1476
AcsI	RAATTY	6 cut(s)	372, 1443, 1562, 1598, 2024, 2187
AcuI	CTGAAG	1 cut(s)	477
AcvI	CACGTG	1 cut(s)	1022
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	4 cut(s)	191, 547, 1647, 1938
AfiI	CCNNNNNNNGG	7 cut(s)	365, 910, 1525, 1536, 1866, 2016, 2252
AflIII	ACRYGT	1 cut(s)	550
AjnI	CCWGG	3 cut(s)	858, 1495, 2182
AjuI	GAANNNNNNNTTGG	2 cut(s)	450, 482
AloI	GAACNNNNNNTCC	2 cut(s)	594, 626
Alw26I	GTCTC	5 cut(s)	393, 1231, 1376, 2298, 2320
AlwI	GGATC	3 cut(s)	436, 1983, 1996
Aor13HI	TCCGGA	1 cut(s)	1078
AoxI	GGCC	4 cut(s)	126, 1476, 1527, 1857
ApoI	RAATTY	6 cut(s)	372, 1443, 1562, 1598, 2024, 2187
Asp700I	GAANNNNTTC	2 cut(s)	1354, 1602
Asp718I	GGTACC	1 cut(s)	1645
AspLEI	GCGC	2 cut(s)	16, 358
AspS9I	GGNCC	2 cut(s)	1370, 1857
AsuC2I	CCSGG	1 cut(s)	755
AsuHPI	GGTGA	6 cut(s)	722, 1076, 1210, 1415, 1511, 2215
AvaII	GGWCC	1 cut(s)	1370
BaeGI	GKGCMC	1 cut(s)	1803
BalI	TGGCCA	1 cut(s)	1478
BamHI	GGATCC	1 cut(s)	1988
BanI	GGYRCC	1 cut(s)	1645
BanII	GRGCYC	1 cut(s)	1933
BarI	GAAGNNNNNNTAC	4 cut(s)	1629, 1661, 2345, 2377
BbrPI	CACGTG	1 cut(s)	1022
BccI	CCATC	8 cut(s)	299, 904, 968, 1055, 1361, 1684, 2225, 2279
BceAI	ACGGC	2 cut(s)	27, 39
BcgI	CGANNNNNNTGC	2 cut(s)	1700, 1734
BciT130I	CCWGG	3 cut(s)	860, 1497, 2184
BciVI	GTATCC	2 cut(s)	1189, 2094
BcnI	CCSGG	1 cut(s)	755
BcoDI	GTCTC	5 cut(s)	393, 1231, 1376, 2298, 2320
BfaI	CTAG	9 cut(s)	44, 392, 423, 558, 842, 1796, 1910, 2270, 2345
BfmI	CTRYAG	1 cut(s)	1746
BfoI	RGCGCY	1 cut(s)	17
BfuI	GTATCC	2 cut(s)	1189, 2094
BlpI	GCTNAGC	2 cut(s)	396, 1290
Bme1390I	CCNGG	4 cut(s)	755, 860, 1497, 2184
Bme18I	GGWCC	1 cut(s)	1370
BmgT120I	GGNCC	2 cut(s)	1370, 1857
BmiI	GGNNCC	3 cut(s)	1647, 1930, 1990
BmrFI	CCNGG	4 cut(s)	755, 860, 1497, 2184
BplI	GAGNNNNNCTC	2 cut(s)	1907, 1939
BpmI	CTGGAG	4 cut(s)	244, 1416, 1712, 1947
Bpu1102I	GCTNAGC	2 cut(s)	396, 1290
BpuEI	CTTGAG	2 cut(s)	748, 785
BpuMI	CCSGG	1 cut(s)	755
BsaAI	YACGTR	1 cut(s)	1022
BsaBI	GATNNNNATC	2 cut(s)	1065, 2336
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	6 cut(s)	123, 207, 858, 904, 1448, 2010
BsaWI	WCCGGW	2 cut(s)	1078, 2097
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 1920, 1950
Bsc4I	CCNNNNNNNGG	7 cut(s)	365, 910, 1525, 1536, 1866, 2016, 2252
Bse1I	ACTGG	2 cut(s)	1399, 1729
Bse3DI	GCAATG	1 cut(s)	1860
Bse8I	GATNNNNATC	2 cut(s)	1065, 2336
BseAI	TCCGGA	1 cut(s)	1078
BseBI	CCWGG	3 cut(s)	860, 1497, 2184
BseDI	CCNNGG	6 cut(s)	123, 207, 858, 904, 1448, 2010
BseGI	GGATG	4 cut(s)	217, 451, 809, 915
BseJI	GATNNNNATC	2 cut(s)	1065, 2336
BseLI	CCNNNNNNNGG	7 cut(s)	365, 910, 1525, 1536, 1866, 2016, 2252
BseMI	GCAATG	1 cut(s)	1860
BseMII	CTCAG	7 cut(s)	302, 368, 387, 576, 910, 1957, 2009
BseNI	ACTGG	2 cut(s)	1399, 1729
BseRI	GAGGAG	4 cut(s)	47, 73, 236, 428
BseSI	GKGCMC	1 cut(s)	1803
BseYI	CCCAGC	2 cut(s)	2053, 2136
Bsh1236I	CGCG	2 cut(s)	356, 615
Bsh1285I	CGRYCG	1 cut(s)	2098
BshFI	GGCC	4 cut(s)	128, 1478, 1529, 1859
BshNI	GGYRCC	1 cut(s)	1645
BsiEI	CGRYCG	1 cut(s)	2098
BsiSI	CCGG	4 cut(s)	240, 754, 1079, 2098
BslFI	GGGAC	2 cut(s)	1640, 1880
BslI	CCNNNNNNNGG	7 cut(s)	365, 910, 1525, 1536, 1866, 2016, 2252
BsmAI	GTCTC	5 cut(s)	393, 1231, 1376, 2298, 2320
BsmFI	GGGAC	2 cut(s)	1640, 1880
BsmI	GAATGC	1 cut(s)	1585
BsnI	GGCC	4 cut(s)	128, 1478, 1529, 1859
Bsp1286I	GDGCHC	2 cut(s)	1803, 1933
Bsp13I	TCCGGA	1 cut(s)	1078
Bsp1407I	TGTACA	1 cut(s)	1936
Bsp143I	GATC	6 cut(s)	428, 1066, 1141, 1407, 1988, 2217
Bsp1720I	GCTNAGC	2 cut(s)	396, 1290
Bsp19I	CCATGG	1 cut(s)	1448
BspACI	CCGC	7 cut(s)	19, 38, 182, 215, 531, 790, 1294
BspANI	GGCC	4 cut(s)	128, 1478, 1529, 1859
BspCNI	CTCAG	7 cut(s)	303, 369, 388, 577, 909, 1956, 2008
BspEI	TCCGGA	1 cut(s)	1078
BspFNI	CGCG	2 cut(s)	356, 615
BspLI	GGNNCC	3 cut(s)	1647, 1930, 1990
BspPI	GGATC	3 cut(s)	436, 1983, 1996
BspT107I	GGYRCC	1 cut(s)	1645
BsrDI	GCAATG	1 cut(s)	1860
BsrGI	TGTACA	1 cut(s)	1936
BsrI	ACTGG	2 cut(s)	1399, 1729
BssECI	CCNNGG	6 cut(s)	123, 207, 858, 904, 1448, 2010
BssMI	GATC	6 cut(s)	428, 1066, 1141, 1407, 1988, 2217
BssNAI	GTATAC	1 cut(s)	1619
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	3 cut(s)	207, 1448, 2010
Bst1107I	GTATAC	1 cut(s)	1619
Bst2UI	CCWGG	3 cut(s)	860, 1497, 2184
Bst4CI	ACNGT	3 cut(s)	1670, 1747, 1755
Bst6I	CTCTTC	2 cut(s)	1196, 1607
BstACI	GRCGYC	1 cut(s)	51
BstAUI	TGTACA	1 cut(s)	1936
BstBAI	YACGTR	1 cut(s)	1022
BstC8I	GCNNGC	6 cut(s)	942, 1810, 1814, 1818, 2176, 2278
BstDSI	CCRYGG	2 cut(s)	904, 1448
BstEII	GGTNACC	1 cut(s)	2369
BstENI	CCTNNNNNAGG	1 cut(s)	1534
BstF5I	GGATG	4 cut(s)	217, 451, 809, 915
BstFNI	CGCG	2 cut(s)	356, 615
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	2 cut(s)	16, 358
BstKTI	GATC	6 cut(s)	431, 1069, 1144, 1410, 1991, 2220
BstMAI	GTCTC	5 cut(s)	393, 1231, 1376, 2298, 2320
BstMBI	GATC	6 cut(s)	428, 1066, 1141, 1407, 1988, 2217
BstMCI	CGRYCG	1 cut(s)	2098
BstMWI	GCNNNNNNNGC	6 cut(s)	264, 1016, 1091, 2063, 2072, 2270
BstNI	CCWGG	3 cut(s)	860, 1497, 2184
BstNSI	RCATGY	6 cut(s)	554, 809, 1486, 1763, 1820, 2178
BstPI	GGTNACC	1 cut(s)	2369
BstSCI	CCNGG	4 cut(s)	753, 858, 1495, 2182
BstSFI	CTRYAG	1 cut(s)	1746
BstSLI	GKGCMC	1 cut(s)	1803
BstUI	CGCG	2 cut(s)	356, 615
BstX2I	RGATCY	2 cut(s)	428, 1988
BstYI	RGATCY	2 cut(s)	428, 1988
BstZ17I	GTATAC	1 cut(s)	1619
BsuI	GTATCC	2 cut(s)	1189, 2094
BsuRI	GGCC	4 cut(s)	128, 1478, 1529, 1859
BtgI	CCRYGG	2 cut(s)	904, 1448
BtsCI	GGATG	4 cut(s)	217, 451, 809, 915
BtsIMutI	CAGTG	5 cut(s)	106, 453, 904, 969, 1362
Cac8I	GCNNGC	6 cut(s)	942, 1810, 1814, 1818, 2176, 2278
CfoI	GCGC	2 cut(s)	16, 358
Cfr13I	GGNCC	2 cut(s)	1370, 1857
CseI	GACGC	1 cut(s)	59
CsiI	ACCWGGT	1 cut(s)	1495
Csp6I	GTAC	4 cut(s)	190, 546, 1646, 1937
CviQI	GTAC	4 cut(s)	190, 546, 1646, 1937
DpnI	GATC	6 cut(s)	430, 1068, 1143, 1409, 1990, 2219
DpnII	GATC	6 cut(s)	428, 1066, 1141, 1407, 1988, 2217
DrdI	GACNNNNNNGTC	1 cut(s)	2312
DseDI	GACNNNNNNGTC	1 cut(s)	2312
EaeI	YGGCCR	1 cut(s)	1476
Eam1104I	CTCTTC	2 cut(s)	1196, 1607
EarI	CTCTTC	2 cut(s)	1196, 1607
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	3 cut(s)	207, 1448, 2010
Eco147I	AGGCCT	2 cut(s)	128, 1529
Eco24I	GRGCYC	1 cut(s)	1933
Eco47I	GGWCC	1 cut(s)	1370
Eco57I	CTGAAG	1 cut(s)	477
Eco72I	CACGTG	1 cut(s)	1022
Eco91I	GGTNACC	1 cut(s)	2369
EcoNI	CCTNNNNNAGG	1 cut(s)	1534
EcoO65I	GGTNACC	1 cut(s)	2369
EcoRI	GAATTC	4 cut(s)	372, 1443, 1562, 2187
EcoRII	CCWGG	3 cut(s)	858, 1495, 2182
EcoT14I	CCWWGG	3 cut(s)	207, 1448, 2010
EcoT22I	ATGCAT	5 cut(s)	330, 811, 985, 1258, 1488
EcoT38I	GRGCYC	1 cut(s)	1933
ErhI	CCWWGG	3 cut(s)	207, 1448, 2010
FaqI	GGGAC	2 cut(s)	1640, 1880
FauNDI	CATATG	1 cut(s)	1684
FblI	GTMKAC	3 cut(s)	48, 864, 1618
FokI	GGATG	4 cut(s)	224, 458, 796, 922
FriOI	GRGCYC	1 cut(s)	1933
FspBI	CTAG	9 cut(s)	44, 392, 423, 558, 842, 1796, 1910, 2270, 2345
GlaI	GCGC	2 cut(s)	15, 357
GsaI	CCCAGC	2 cut(s)	2057, 2140
GsuI	CTGGAG	4 cut(s)	244, 1416, 1712, 1947
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	4 cut(s)	128, 1478, 1529, 1859
HapII	CCGG	4 cut(s)	240, 754, 1079, 2098
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	2 cut(s)	16, 358
Hin1I	GRCGYC	1 cut(s)	51
Hin6I	GCGC	2 cut(s)	14, 356
HinP1I	GCGC	2 cut(s)	14, 356
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HpaII	CCGG	4 cut(s)	240, 754, 1079, 2098
HphI	GGTGA	6 cut(s)	722, 1076, 1210, 1415, 1511, 2215
Hpy166II	GTNNAC	6 cut(s)	49, 453, 548, 865, 904, 1619
Hpy188I	TCNGA	6 cut(s)	112, 231, 378, 586, 1216, 1412
Hpy188III	TCNNGA	9 cut(s)	160, 261, 536, 989, 1079, 1260, 1609, 1709, 1926
Hpy8I	GTNNAC	6 cut(s)	49, 453, 548, 865, 904, 1619
Hpy99I	CGWCG	2 cut(s)	53, 74
HpyCH4III	ACNGT	3 cut(s)	1670, 1747, 1755
HpyCH4IV	ACGT	1 cut(s)	1021
HpyF10VI	GCNNNNNNNGC	6 cut(s)	264, 1016, 1091, 2063, 2072, 2270
HpySE526I	ACGT	1 cut(s)	1021
Hsp92I	GRCGYC	1 cut(s)	51
HspAI	GCGC	2 cut(s)	14, 356
Kpn2I	TCCGGA	1 cut(s)	1078
KpnI	GGTACC	1 cut(s)	1649
Kzo9I	GATC	6 cut(s)	428, 1066, 1141, 1407, 1988, 2217
LmnI	GCTCC	9 cut(s)	40, 184, 223, 263, 937, 949, 1928, 2080, 2123
MabI	ACCWGGT	1 cut(s)	1495
MaeI	CTAG	9 cut(s)	44, 392, 423, 558, 842, 1796, 1910, 2270, 2345
MaeII	ACGT	1 cut(s)	1021
MaeIII	GTNAC	7 cut(s)	291, 553, 710, 1309, 1755, 2090, 2369
MalI	GATC	6 cut(s)	430, 1068, 1143, 1409, 1990, 2219
MboI	GATC	6 cut(s)	428, 1066, 1141, 1407, 1988, 2217
MboII	GAAGA	6 cut(s)	423, 909, 1149, 1213, 1624, 1649
MflI	RGATCY	2 cut(s)	428, 1988
MhlI	GDGCHC	2 cut(s)	1803, 1933
MlsI	TGGCCA	1 cut(s)	1478
MluNI	TGGCCA	1 cut(s)	1478
MlyI	GAGTC	7 cut(s)	74, 243, 395, 1205, 1407, 1649, 2289
MmeI	TCCRAC	2 cut(s)	448, 1209
Mox20I	TGGCCA	1 cut(s)	1478
Mph1103I	ATGCAT	5 cut(s)	330, 811, 985, 1258, 1488
MroI	TCCGGA	1 cut(s)	1078
MroXI	GAANNNNTTC	2 cut(s)	1354, 1602
MscI	TGGCCA	1 cut(s)	1478
MseI	TTAA	3 cut(s)	951, 1491, 2165
MslI	CAYNNNNRTG	1 cut(s)	2131
Msp20I	TGGCCA	1 cut(s)	1478
MspA1I	CMGCKG	2 cut(s)	531, 1376
MspI	CCGG	4 cut(s)	240, 754, 1079, 2098
MspR9I	CCNGG	4 cut(s)	755, 860, 1497, 2184
Mva1269I	GAATGC	1 cut(s)	1585
MvaI	CCWGG	3 cut(s)	860, 1497, 2184
MvnI	CGCG	2 cut(s)	356, 615
MwoI	GCNNNNNNNGC	6 cut(s)	264, 1016, 1091, 2063, 2072, 2270
NciI	CCSGG	1 cut(s)	755
NcoI	CCATGG	1 cut(s)	1448
NdeI	CATATG	1 cut(s)	1684
NdeII	GATC	6 cut(s)	428, 1066, 1141, 1407, 1988, 2217
NlaIV	GGNNCC	3 cut(s)	1647, 1930, 1990
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	2 cut(s)	553, 710
NsiI	ATGCAT	5 cut(s)	330, 811, 985, 1258, 1488
NspI	RCATGY	6 cut(s)	554, 809, 1486, 1763, 1820, 2178
PaeI	GCATGC	2 cut(s)	1820, 2178
PceI	AGGCCT	2 cut(s)	128, 1529
PciI	ACATGT	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	1585
PdmI	GAANNNNTTC	2 cut(s)	1354, 1602
PfeI	GAWTC	2 cut(s)	282, 403
PflMI	CCANNNNNTGG	1 cut(s)	910
PleI	GAGTC	7 cut(s)	74, 242, 394, 1205, 1407, 1649, 2289
PmaCI	CACGTG	1 cut(s)	1022
PmlI	CACGTG	1 cut(s)	1022
PpsI	GAGTC	7 cut(s)	74, 242, 394, 1205, 1407, 1649, 2289
Ppu21I	YACGTR	1 cut(s)	1022
PscI	ACATGT	1 cut(s)	550
Psp6I	CCWGG	3 cut(s)	858, 1495, 2182
PspCI	CACGTG	1 cut(s)	1022
PspEI	GGTNACC	1 cut(s)	2369
PspFI	CCCAGC	2 cut(s)	2053, 2136
PspGI	CCWGG	3 cut(s)	858, 1495, 2182
PspN4I	GGNNCC	3 cut(s)	1647, 1930, 1990
PspPI	GGNCC	2 cut(s)	1370, 1857
PsuI	RGATCY	2 cut(s)	428, 1988
PvuII	CAGCTG	1 cut(s)	1376
RsaI	GTAC	4 cut(s)	191, 547, 1647, 1938
RsaNI	GTAC	4 cut(s)	190, 546, 1646, 1937
RseI	CAYNNNNRTG	1 cut(s)	2131
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	951, 1491, 2165
Sau3AI	GATC	6 cut(s)	428, 1066, 1141, 1407, 1988, 2217
Sau96I	GGNCC	2 cut(s)	1370, 1857
SchI	GAGTC	7 cut(s)	74, 243, 395, 1205, 1407, 1649, 2289
ScrFI	CCNGG	4 cut(s)	755, 860, 1497, 2184
SduI	GDGCHC	2 cut(s)	1803, 1933
SexAI	ACCWGGT	1 cut(s)	1495
SfcI	CTRYAG	1 cut(s)	1746
SinI	GGWCC	1 cut(s)	1370
SmiMI	CAYNNNNRTG	1 cut(s)	2131
SmlI	CTYRAG	2 cut(s)	727, 764
SmoI	CTYRAG	2 cut(s)	727, 764
SphI	GCATGC	2 cut(s)	1820, 2178
SseBI	AGGCCT	2 cut(s)	128, 1529
SsiI	CCGC	7 cut(s)	19, 38, 182, 215, 531, 790, 1294
SspI	AATATT	2 cut(s)	1551, 1741
SspMI	CTAG	9 cut(s)	44, 392, 423, 558, 842, 1796, 1910, 2270, 2345
StuI	AGGCCT	2 cut(s)	128, 1529
StyD4I	CCNGG	4 cut(s)	753, 858, 1495, 2182
StyI	CCWWGG	3 cut(s)	207, 1448, 2010
TaaI	ACNGT	3 cut(s)	1670, 1747, 1755
TaiI	ACGT	1 cut(s)	1024
TaqI	TCGA	3 cut(s)	48, 636, 870
TatI	WGTACW	2 cut(s)	545, 1936
TauI	GCSGC	1 cut(s)	792
TfiI	GAWTC	2 cut(s)	282, 403
Tru1I	TTAA	3 cut(s)	951, 1491, 2165
Tru9I	TTAA	3 cut(s)	951, 1491, 2165
TscAI	CASTG	5 cut(s)	106, 460, 904, 976, 1369
TseFI	GTSAC	2 cut(s)	553, 710
Tsp45I	GTSAC	2 cut(s)	553, 710
TspDTI	ATGAA	6 cut(s)	85, 737, 1575, 1592, 1611, 1963
TspGWI	ACGGA	3 cut(s)	1453, 1549, 1890
TspRI	CASTG	5 cut(s)	106, 460, 904, 976, 1369
Van91I	CCANNNNNTGG	1 cut(s)	910
VpaK11BI	GGWCC	1 cut(s)	1370
XagI	CCTNNNNNAGG	1 cut(s)	1534
XapI	RAATTY	6 cut(s)	372, 1443, 1562, 1598, 2024, 2187
XceI	RCATGY	6 cut(s)	554, 809, 1486, 1763, 1820, 2178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1503
XmiI	GTMKAC	3 cut(s)	48, 864, 1618
XmnI	GAANNNNTTC	2 cut(s)	1354, 1602
XspI	CTAG	9 cut(s)	44, 392, 423, 558, 842, 1796, 1910, 2270, 2345
Zsp2I	ATGCAT	5 cut(s)	330, 811, 985, 1258, 1488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.