Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015378.1

Orthogroup ID

OG0009966

Physical Location & Seq

Genomic Coordinates Forward (+)

2414 .. 2920

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015378.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggcgaagtacggcgagggcgacaagcggtggatcgtggaagacagacccgacggagcgaacgtccacaactggcactgggccgagaccgattgcctgggctggtcacgtgacctcctcaccaagctcctctccaacctcaccatcctcgacggcgaaggcgacctcttcatcaagaccaacaaggtcgacaaggtcgaaggcgacgcctacgtcaacattcgcaagggcaagatcatccccggctacgaaatcagcctcagtctctcctgggagggcgaggccagagactccgacggcaaatcgctgctcaaggtcgacggcgccgtcgagattccctacatcgccgacgagaatgccgacgaggaccccgaggttagggtctcggtgaaggacgagggccccattgggaggaggattaaggaggctatggtggccaaggggaagcctgtgattttggacaaggttagggtttatgtgcagagtatggcgcagggtgggccggcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008047 GO:0008150 GO:0030234 GO:0031072 GO:0032781 GO:0043085 GO:0043462 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0051879 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AHSA1 Aha1_N

Protein Analysis

169

Amino Acids

18.72

Weight (kDa)

4.96

Isoelectric Point (pI)

25.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12050 AT3G12050
fragaria_vesca	FvH4_6g21990
malus_domestica	MD12G1055300.v1.1 MD14G1054700.v1.1
prunus_persica	Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1
pyrus_communis	pycom12g04830 pycom14g04520
rosa_chinensis	RchiOBHm_Chr3g0479291
rosa_laevigata	RLG00000023586
rosa_multiflora	Rmu_sc0015378.1_g000002 Rmu_sc0026945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402430
rosa_rugosa	Rorug03G0174200
rosa_samantha	Rh3AG225200 Rh3BG257700 Rh3CG253400 Rh3DG249600
rosa_wichuraiana	Rw3G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	212, 326
AccB1I	GGYRCC	1 cut(s)	323
AccI	GTMKAC	2 cut(s)	189, 318
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	435
AcvI	CACGTG	1 cut(s)	110
AcyI	GRCGYC	2 cut(s)	207, 324
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	378, 411
AjnI	CCWGG	2 cut(s)	96, 269
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw26I	GTCTC	4 cut(s)	80, 269, 282, 388
AlwI	GGATC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	5 cut(s)	81, 282, 400, 435, 500
ApaI	GGGCCC	1 cut(s)	404
ApeKI	GCWGC	1 cut(s)	307
AspLEI	GCGC	2 cut(s)	326, 493
AspS9I	GGNCC	5 cut(s)	81, 367, 400, 401, 500
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	3 cut(s)	112, 133, 400
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	367
BaeGI	GKGCMC	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	404
BbrPI	CACGTG	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	5 cut(s)	28, 169, 311, 313, 337
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	2 cut(s)	98, 271
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	4 cut(s)	80, 269, 282, 388
BfoI	RGCGCY	1 cut(s)	327
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	3 cut(s)	98, 243, 271
Bme18I	GGWCC	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	5 cut(s)	81, 367, 400, 401, 500
BmiI	GGNNCC	4 cut(s)	325, 369, 402, 403
BmrFI	CCNGG	3 cut(s)	98, 243, 271
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	110
BsaHI	GRCGYC	2 cut(s)	207, 324
BsaI	GGTCTC	2 cut(s)	80, 388
BsaJI	CCNNGG	5 cut(s)	97, 241, 270, 372, 438
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 99, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 411
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	2 cut(s)	77, 83
BseBI	CCWGG	2 cut(s)	98, 271
BseDI	CCNNGG	5 cut(s)	97, 241, 270, 372, 438
BseGI	GGATG	2 cut(s)	144, 237
BseLI	CCNNNNNNNGG	2 cut(s)	378, 411
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	2 cut(s)	77, 83
BseRI	GAGGAG	3 cut(s)	107, 119, 427
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	500
BshFI	GGCC	6 cut(s)	83, 284, 402, 437, 502, 506
BshNI	GGYRCC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	243, 503
BslI	CCNNNNNNNGG	2 cut(s)	378, 411
BsmAI	GTCTC	4 cut(s)	80, 269, 282, 388
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	6 cut(s)	83, 284, 402, 437, 502, 506
Bso31I	GGTCTC	2 cut(s)	80, 388
BsoBI	CYCGRG	1 cut(s)	371
Bsp120I	GGGCCC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	2 cut(s)	33, 234
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	6 cut(s)	83, 284, 402, 437, 502, 506
BspCNI	CTCAG	1 cut(s)	273
BspLI	GGNNCC	4 cut(s)	325, 369, 402, 403
BspPI	GGATC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	323
BspTNI	GGTCTC	2 cut(s)	80, 388
BsrFI	RCCGGY	1 cut(s)	502
BsrI	ACTGG	2 cut(s)	77, 83
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	5 cut(s)	97, 241, 270, 372, 438
BssMI	GATC	2 cut(s)	33, 234
BssNI	GRCGYC	2 cut(s)	207, 324
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	98, 271
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	2 cut(s)	207, 324
BstBAI	YACGTR	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	144, 237
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	2 cut(s)	326, 493
BstKTI	GATC	2 cut(s)	36, 237
BstMAI	GTCTC	4 cut(s)	80, 269, 282, 388
BstMBI	GATC	2 cut(s)	33, 234
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 499
BstNI	CCWGG	2 cut(s)	98, 271
BstSCI	CCNGG	3 cut(s)	96, 241, 269
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	1 cut(s)	294
BstV2I	GAAGAC	1 cut(s)	48
BsuRI	GGCC	6 cut(s)	83, 284, 402, 437, 502, 506
BtgZI	GCGATG	1 cut(s)	328
BtsCI	GGATG	2 cut(s)	144, 237
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	504
CfoI	GCGC	2 cut(s)	326, 493
Cfr10I	RCCGGY	1 cut(s)	502
Cfr13I	GGNCC	5 cut(s)	81, 367, 400, 401, 500
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	10
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	260
DinI	GGCGCC	1 cut(s)	325
DpnI	GATC	2 cut(s)	35, 236
DpnII	GATC	2 cut(s)	33, 234
DrdI	GACNNNNNNGTC	2 cut(s)	212, 326
DseDI	GACNNNNNNGTC	2 cut(s)	212, 326
EaeI	YGGCCR	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	404
Eco31I	GGTCTC	2 cut(s)	80, 388
Eco47I	GGWCC	1 cut(s)	367
Eco72I	CACGTG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	371
EcoO109I	RGGNCCY	3 cut(s)	367, 400, 401
EcoRII	CCWGG	2 cut(s)	96, 269
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	404
EgeI	GGCGCC	1 cut(s)	325
EheI	GGCGCC	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	438
FaiI	YATR	3 cut(s)	431, 477, 488
FblI	GTMKAC	2 cut(s)	189, 318
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	2 cut(s)	131, 224
FriOI	GRGCYC	1 cut(s)	404
FseI	GGCCGGCC	1 cut(s)	506
Fsp4HI	GCNGC	1 cut(s)	308
GlaI	GCGC	2 cut(s)	325, 492
GluI	GCNGC	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	6 cut(s)	83, 284, 402, 437, 502, 506
HapII	CCGG	2 cut(s)	243, 503
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	2 cut(s)	326, 493
Hin1I	GRCGYC	2 cut(s)	207, 324
Hin6I	GCGC	2 cut(s)	324, 491
HinP1I	GCGC	2 cut(s)	324, 491
HincII	GTYRAC	3 cut(s)	190, 217, 319
HindII	GTYRAC	3 cut(s)	190, 217, 319
HinfI	GANTC	2 cut(s)	290, 334
HpaII	CCGG	2 cut(s)	243, 503
HphI	GGTGA	3 cut(s)	112, 133, 400
Hpy166II	GTNNAC	4 cut(s)	67, 190, 217, 319
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	2 cut(s)	175, 331
Hpy8I	GTNNAC	4 cut(s)	67, 190, 217, 319
Hpy99I	CGWCG	8 cut(s)	56, 155, 209, 299, 323, 332, 353, 365
HpyAV	CCTTC	3 cut(s)	152, 194, 385
HpyCH4IV	ACGT	3 cut(s)	63, 109, 213
HpyCH4V	TGCA	1 cut(s)	481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 499
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	3 cut(s)	63, 109, 213
Hsp92I	GRCGYC	2 cut(s)	207, 324
HspAI	GCGC	2 cut(s)	324, 491
KasI	GGCGCC	1 cut(s)	323
KroI	GCCGGC	1 cut(s)	502
KroNI	GCCGGC	1 cut(s)	504
Kzo9I	GATC	2 cut(s)	33, 234
LmnI	GCTCC	2 cut(s)	56, 132
Lsp1109I	GCAGC	1 cut(s)	294
MaeII	ACGT	3 cut(s)	63, 109, 213
MaeIII	GTNAC	2 cut(s)	105, 110
MalI	GATC	2 cut(s)	35, 236
MboI	GATC	2 cut(s)	33, 234
MboII	GAAGA	2 cut(s)	53, 160
MhlI	GDGCHC	1 cut(s)	404
MlsI	TGGCCA	1 cut(s)	437
MluNI	TGGCCA	1 cut(s)	437
Mly113I	GGCGCC	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	2 cut(s)	159, 318
Mox20I	TGGCCA	1 cut(s)	437
MroNI	GCCGGC	1 cut(s)	502
MscI	TGGCCA	1 cut(s)	437
MseI	TTAA	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	437
MspI	CCGG	2 cut(s)	243, 503
MspR9I	CCNGG	3 cut(s)	98, 243, 271
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	2 cut(s)	98, 271
MwoI	GCNNNNNNNGC	2 cut(s)	434, 499
NaeI	GCCGGC	1 cut(s)	504
NarI	GGCGCC	1 cut(s)	324
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	2 cut(s)	33, 234
NgoMIV	GCCGGC	1 cut(s)	502
NlaIV	GGNNCC	4 cut(s)	325, 369, 402, 403
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	105, 110
PcsI	WCGNNNNNNNCGW	8 cut(s)	18, 60, 159, 195, 324, 327, 357, 369
PctI	GAATGC	1 cut(s)	361
PdiI	GCCGGC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	334
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	1 cut(s)	284
PluTI	GGCGCC	1 cut(s)	327
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	96, 269
PspCI	CACGTG	1 cut(s)	110
PspGI	CCWGG	2 cut(s)	96, 269
PspN4I	GGNNCC	4 cut(s)	325, 369, 402, 403
PspOMI	GGGCCC	1 cut(s)	400
PspPI	GGNCC	5 cut(s)	81, 367, 400, 401, 500
PspPPI	RGGWCCY	1 cut(s)	367
PsyI	GACNNNGTC	1 cut(s)	194
RigI	GGCCGGCC	1 cut(s)	506
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SalI	GTCGAC	2 cut(s)	188, 317
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	2 cut(s)	33, 234
Sau96I	GGNCC	5 cut(s)	81, 367, 400, 401, 500
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	3 cut(s)	98, 243, 271
SduI	GDGCHC	1 cut(s)	404
SfoI	GGCGCC	1 cut(s)	325
SinI	GGWCC	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SsiI	CCGC	1 cut(s)	28
SspDI	GGCGCC	1 cut(s)	323
StyD4I	CCNGG	3 cut(s)	96, 241, 269
StyI	CCWWGG	1 cut(s)	438
TaiI	ACGT	3 cut(s)	66, 112, 216
TaqI	TCGA	5 cut(s)	150, 189, 198, 318, 330
TaqII	GACCGA	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	2 cut(s)	105, 110
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	2 cut(s)	105, 110
TspDTI	ATGAA	1 cut(s)	160
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	1 cut(s)	83
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	367
XmiI	GTMKAC	2 cut(s)	189, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.