Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009966

Physical Location & Seq

Genomic Coordinates Forward (+)

5515798 .. 5517985

Gene Structure 2188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1054700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCGAAGTACGGCGAGGGCGACAAGCGGTGGATCGTGGAGGACAGGCCCGACGGAGCCAACGTCCACAACTGGCACTGGGCCGAGACCGACTGCCTCGGCTGGTCACGTGACCTCCTCAACAAGCTCCTCAACAACCTCACCGTCCTCGACGGCGAAGGCAACCTACACCTCAGGACCAAGACCGTCGACAAGGTCGACGGCGAAGCCTACGTCAACGTCCGGAAAGGGAAGATCATCCCGGGATACGAAATCAGCCTCAGTCTGTCGTGGGAGGGCGAGGCGAAGGACGGCGACGGGAAGTCCCTGCTGAAGGTTGACGGAGCTGTGGAGATTCCGTATATTTCGGATGAGAACGCCGACGAGGACCCGGAGGTTAAGGTTTCGGTGAAGGATGAGGGGCCAATTGGGAGGAGGATTAAGGAGGCGATGGTGGCGAAGGGGAAGCCGTTGATTTTGGAGAAGGTTAGGGTTTATGTGGAGAGTATGGCGAAGGGCGGGCCGGCGAAGGAGGAAGTCGAGGCTAAGAAGATTGCGCCGAAGAGTAATTCGACGGCCGCGGTGACTGCGGCAACGGCGACAAAGGAGGTGGTTGTGGAGAAGGAGGTGAAGAAGAAGGAGAGCAAGAAAGGGTTCAAGACGATTAATTTGACTGAGAAGTTCAGTTGCAGGGCGAAAGATATGTTTGAGATTTTGATGGATGAGAACAGATGGAAGGGTTTTACGCAGAGCAATGCGAAGATAAGCAAGGAGGTAGGAGGGCCGATTAGTATTTTTGATGGGTCGGTGACCGGTACGAATTTGGAGTTGCAGAGTGGGAGTTTGATTGTGCAGAAATGGAGATTTGGGAGCTGGCCTGACGGGATTGATTCGACGGTGAGGCTTACACTTGAAGAACCTGAACCTGGGCTCACTGTTGTTAAACTAACACATACGGACATTCCTGATGAAGACAGATATGGGAACGCGACTGTGGTGGAGAATACGGAGAGAGGATGGCGGGATCTTATCTTCCAGCGGATAAGGGCAGTTTTTGGTTTTGGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008047 GO:0008150 GO:0030234 GO:0031072 GO:0032781 GO:0043085 GO:0043462 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0051879 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AHSA1 Aha1_N

Protein Analysis

350

Amino Acids

38.75

Weight (kDa)

5.69

Isoelectric Point (pI)

22.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aha1_N	PF09229	29 - 165	2.3e-32	Activator of Hsp90 ATPase, N-terminal
AHSA1	PF08327	225 - 345	9.6e-14	Activator of Hsp90 ATPase homolog 1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12050 AT3G12050
fragaria_vesca	FvH4_6g21990
malus_domestica	MD12G1055300.v1.1 MD14G1054700.v1.1
prunus_persica	Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1
pyrus_communis	pycom12g04830 pycom14g04520
rosa_chinensis	RchiOBHm_Chr3g0479291
rosa_laevigata	RLG00000023586
rosa_multiflora	Rmu_sc0015378.1_g000002 Rmu_sc0026945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402430
rosa_rugosa	Rorug03G0174200
rosa_samantha	Rh3AG225200 Rh3BG257700 Rh3CG253400 Rh3DG249600
rosa_wichuraiana	Rw3G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	189, 198
AccII	CGCG	2 cut(s)	560, 968
AccIII	TCCGGA	1 cut(s)	222
AciI	CCGC	7 cut(s)	28, 498, 558, 560, 569, 1000, 1018
AclWI	GGATC	2 cut(s)	41, 1011
AcoI	YGGCCR	1 cut(s)	555
AcsI	RAATTY	1 cut(s)	799
AcuI	CTGAAG	1 cut(s)	332
AcvI	CACGTG	1 cut(s)	110
AfaI	GTAC	2 cut(s)	11, 796
AfiI	CCNNNNNNNGG	2 cut(s)	313, 905
AgeI	ACCGGT	1 cut(s)	791
AgsI	TTSAA	2 cut(s)	637, 893
AhdI	GACNNNNNGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	904
AluBI	AGCT	3 cut(s)	127, 326, 852
AluI	AGCT	3 cut(s)	127, 326, 852
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	2 cut(s)	41, 1011
Ama87I	CYCGRG	1 cut(s)	241
Aor13HI	TCCGGA	1 cut(s)	222
AoxI	GGCC	7 cut(s)	47, 81, 401, 500, 555, 761, 854
ApoI	RAATTY	1 cut(s)	799
ArsI	GACNNNNNNTTYG	4 cut(s)	198, 230, 631, 663
AseI	ATTAAT	1 cut(s)	645
AsiGI	ACCGGT	1 cut(s)	791
Asp700I	GAANNNNTTC	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	7 cut(s)	48, 81, 177, 367, 401, 500, 761
AsuC2I	CCSGG	3 cut(s)	242, 243, 371
AsuHPI	GGTGA	6 cut(s)	133, 400, 574, 619, 799, 889
AvaI	CYCGRG	1 cut(s)	241
AvaII	GGWCC	2 cut(s)	177, 367
AxyI	CCTNAGG	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	912
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BbrPI	CACGTG	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	957
BccI	CCATC	5 cut(s)	424, 691, 705, 773, 990
BceAI	ACGGC	7 cut(s)	28, 169, 217, 307, 433, 570, 591
BciT130I	CCWGG	1 cut(s)	906
BciVI	GTATCC	1 cut(s)	239
BcnI	CCSGG	3 cut(s)	242, 243, 371
BcoDI	GTCTC	1 cut(s)	80
BfuI	GTATCC	1 cut(s)	239
BisI	GCNGC	2 cut(s)	558, 570
BlsI	GCNGC	2 cut(s)	559, 571
Bme1390I	CCNGG	4 cut(s)	242, 243, 371, 906
Bme18I	GGWCC	2 cut(s)	177, 367
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	241
BmgT120I	GGNCC	7 cut(s)	48, 81, 177, 367, 401, 500, 761
BmiI	GGNNCC	3 cut(s)	58, 369, 402
BmrFI	CCNGG	4 cut(s)	242, 243, 371, 906
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	957
BpuMI	CCSGG	3 cut(s)	242, 243, 371
BsaAI	YACGTR	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	4 cut(s)	97, 241, 558, 905
BsaWI	WCCGGW	2 cut(s)	222, 791
BsaXI	ACNNNNNCTCC	6 cut(s)	48, 78, 99, 129, 323, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 905
Bse118I	RCCGGY	2 cut(s)	502, 791
Bse1I	ACTGG	2 cut(s)	77, 83
Bse21I	CCTNAGG	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	739
BseAI	TCCGGA	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	906
BseDI	CCNNGG	4 cut(s)	97, 241, 558, 905
BseGI	GGATG	5 cut(s)	237, 355, 400, 706, 1001
BseLI	CCNNNNNNNGG	2 cut(s)	313, 905
BseMI	GCAATG	1 cut(s)	739
BseMII	CTCAG	3 cut(s)	187, 274, 645
BseNI	ACTGG	2 cut(s)	77, 83
BseRI	GAGGAG	3 cut(s)	107, 119, 427
BseX3I	CGGCCG	1 cut(s)	555
BsgI	GTGCAG	1 cut(s)	851
Bsh1236I	CGCG	2 cut(s)	560, 968
Bsh1285I	CGRYCG	1 cut(s)	558
BshFI	GGCC	7 cut(s)	49, 83, 403, 502, 557, 763, 856
BshTI	ACCGGT	1 cut(s)	791
BsiEI	CGRYCG	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	241
BsiSI	CCGG	5 cut(s)	223, 242, 371, 503, 792
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	2 cut(s)	313, 905
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	7 cut(s)	49, 83, 403, 502, 557, 763, 856
Bso31I	GGTCTC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	912
Bsp13I	TCCGGA	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	33, 234, 1003
BspACI	CCGC	7 cut(s)	28, 498, 558, 560, 569, 1000, 1018
BspANI	GGCC	7 cut(s)	49, 83, 403, 502, 557, 763, 856
BspCNI	CTCAG	3 cut(s)	186, 273, 646
BspEI	TCCGGA	1 cut(s)	222
BspFNI	CGCG	2 cut(s)	560, 968
BspLI	GGNNCC	3 cut(s)	58, 369, 402
BspPI	GGATC	2 cut(s)	41, 1011
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	739
BsrFI	RCCGGY	2 cut(s)	502, 791
BsrI	ACTGG	2 cut(s)	77, 83
BssAI	RCCGGY	2 cut(s)	502, 791
BssECI	CCNNGG	4 cut(s)	97, 241, 558, 905
BssMI	GATC	3 cut(s)	33, 234, 1003
Bst2UI	CCWGG	1 cut(s)	906
Bst4CI	ACNGT	5 cut(s)	145, 187, 877, 916, 973
Bst6I	CTCTTC	1 cut(s)	536
BstBAI	YACGTR	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	500, 504, 854
BstDEI	CTNAG	4 cut(s)	173, 260, 525, 654
BstDSI	CCRYGG	1 cut(s)	558
BstEII	GGTNACC	1 cut(s)	787
BstENI	CCTNNNNNAGG	1 cut(s)	311
BstF5I	GGATG	5 cut(s)	237, 355, 400, 706, 1001
BstFNI	CGCG	2 cut(s)	560, 968
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	3 cut(s)	36, 237, 1006
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	3 cut(s)	33, 234, 1003
BstMCI	CGRYCG	1 cut(s)	558
BstMWI	GCNNNNNNNGC	3 cut(s)	434, 566, 575
BstNI	CCWGG	1 cut(s)	906
BstPI	GGTNACC	1 cut(s)	787
BstSCI	CCNGG	4 cut(s)	240, 241, 369, 904
BstUI	CGCG	2 cut(s)	560, 968
BstV2I	GAAGAC	1 cut(s)	957
BstX2I	RGATCY	1 cut(s)	1003
BstYI	RGATCY	1 cut(s)	1003
BstZI	CGGCCG	1 cut(s)	555
Bsu36I	CCTNAGG	1 cut(s)	173
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	7 cut(s)	49, 83, 403, 502, 557, 763, 856
BtgI	CCRYGG	1 cut(s)	558
BtgZI	GCGATG	1 cut(s)	443
BtsCI	GGATG	5 cut(s)	237, 355, 400, 706, 1001
BtsIMutI	CAGTG	2 cut(s)	76, 912
Cac8I	GCNNGC	3 cut(s)	500, 504, 854
CfoI	GCGC	1 cut(s)	538
Cfr10I	RCCGGY	2 cut(s)	502, 791
Cfr13I	GGNCC	7 cut(s)	48, 81, 177, 367, 401, 500, 761
Cfr42I	CCGCGG	1 cut(s)	561
Cfr9I	CCCGGG	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	10, 795
CspAI	ACCGGT	1 cut(s)	791
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviQI	GTAC	2 cut(s)	10, 795
DdeI	CTNAG	4 cut(s)	173, 260, 525, 654
DpnI	GATC	3 cut(s)	35, 236, 1005
DpnII	GATC	3 cut(s)	33, 234, 1003
DriI	GACNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	555
EagI	CGGCCG	1 cut(s)	555
Eam1104I	CTCTTC	1 cut(s)	536
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	536
EclXI	CGGCCG	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	912
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	2 cut(s)	177, 367
Eco52I	CGGCCG	1 cut(s)	555
Eco57I	CTGAAG	1 cut(s)	332
Eco72I	CACGTG	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	241
Eco91I	GGTNACC	1 cut(s)	787
EcoNI	CCTNNNNNAGG	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	787
EcoRII	CCWGG	1 cut(s)	904
EcoT38I	GRGCYC	1 cut(s)	912
FaiI	YATR	6 cut(s)	342, 477, 488, 683, 933, 960
FaqI	GGGAC	1 cut(s)	289
FauI	CCCGC	2 cut(s)	491, 993
FblI	GTMKAC	2 cut(s)	189, 198
Fnu4HI	GCNGC	2 cut(s)	558, 570
FokI	GGATG	5 cut(s)	224, 362, 407, 713, 1008
FriOI	GRGCYC	1 cut(s)	912
Fsp4HI	GCNGC	2 cut(s)	558, 570
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	2 cut(s)	558, 570
HaeIII	GGCC	7 cut(s)	49, 83, 403, 502, 557, 763, 856
HapII	CCGG	5 cut(s)	223, 242, 371, 503, 792
HhaI	GCGC	1 cut(s)	538
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HincII	GTYRAC	4 cut(s)	190, 199, 217, 319
HindII	GTYRAC	4 cut(s)	190, 199, 217, 319
HinfI	GANTC	2 cut(s)	334, 869
HpaII	CCGG	5 cut(s)	223, 242, 371, 503, 792
HphI	GGTGA	6 cut(s)	133, 400, 574, 619, 799, 889
Hpy166II	GTNNAC	5 cut(s)	67, 190, 199, 217, 319
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	4 cut(s)	175, 223, 637, 944
Hpy8I	GTNNAC	5 cut(s)	67, 190, 199, 217, 319
Hpy99I	CGWCG	8 cut(s)	56, 155, 191, 203, 299, 365, 556, 877
HpyCH4III	ACNGT	5 cut(s)	145, 187, 877, 916, 973
HpyCH4IV	ACGT	4 cut(s)	63, 109, 213, 219
HpyCH4V	TGCA	3 cut(s)	669, 811, 832
HpyF10VI	GCNNNNNNNGC	3 cut(s)	434, 566, 575
HpyF3I	CTNAG	4 cut(s)	173, 260, 525, 654
HpySE526I	ACGT	4 cut(s)	63, 109, 213, 219
HspAI	GCGC	1 cut(s)	536
Kpn2I	TCCGGA	1 cut(s)	222
KroI	GCCGGC	1 cut(s)	502
KroNI	GCCGGC	1 cut(s)	504
KspI	CCGCGG	1 cut(s)	561
Kzo9I	GATC	3 cut(s)	33, 234, 1003
LmnI	GCTCC	4 cut(s)	56, 132, 323, 849
MaeII	ACGT	4 cut(s)	63, 109, 213, 219
MaeIII	GTNAC	4 cut(s)	105, 110, 562, 787
MalI	GATC	3 cut(s)	35, 236, 1005
MboI	GATC	3 cut(s)	33, 234, 1003
MboII	GAAGA	9 cut(s)	244, 541, 553, 622, 625, 751, 905, 962, 1003
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	1 cut(s)	1003
MhlI	GDGCHC	1 cut(s)	912
MluCI	AATT	4 cut(s)	405, 547, 646, 799
MroI	TCCGGA	1 cut(s)	222
MroNI	GCCGGC	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	632
MseI	TTAA	5 cut(s)	378, 420, 645, 921, 1048
MspA1I	CMGCKG	2 cut(s)	560, 1018
MspI	CCGG	5 cut(s)	223, 242, 371, 503, 792
MspR9I	CCNGG	4 cut(s)	242, 243, 371, 906
MunI	CAATTG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	906
MvnI	CGCG	2 cut(s)	560, 968
MwoI	GCNNNNNNNGC	3 cut(s)	434, 566, 575
NaeI	GCCGGC	1 cut(s)	504
NciI	CCSGG	3 cut(s)	242, 243, 371
NdeII	GATC	3 cut(s)	33, 234, 1003
NgoMIV	GCCGGC	1 cut(s)	502
NlaIV	GGNNCC	3 cut(s)	58, 369, 402
NmeAIII	GCCGAG	2 cut(s)	78, 109
NmuCI	GTSAC	4 cut(s)	105, 110, 562, 787
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 60, 195
PdiI	GCCGGC	1 cut(s)	504
PdmI	GAANNNNTTC	1 cut(s)	632
PfeI	GAWTC	2 cut(s)	334, 869
PflFI	GACNNNGTC	1 cut(s)	194
PinAI	ACCGGT	1 cut(s)	791
PkrI	GCNGC	2 cut(s)	559, 571
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
Ppu21I	YACGTR	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	904
PspCI	CACGTG	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	787
PspGI	CCWGG	1 cut(s)	904
PspN4I	GGNNCC	3 cut(s)	58, 369, 402
PspPI	GGNCC	7 cut(s)	48, 81, 177, 367, 401, 500, 761
PspPPI	RGGWCCY	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	1003
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	2 cut(s)	11, 796
RsaNI	GTAC	2 cut(s)	10, 795
SacII	CCGCGG	1 cut(s)	561
SalI	GTCGAC	2 cut(s)	188, 197
SaqAI	TTAA	5 cut(s)	378, 420, 645, 921, 1048
SatI	GCNGC	2 cut(s)	558, 570
Sau3AI	GATC	3 cut(s)	33, 234, 1003
Sau96I	GGNCC	7 cut(s)	48, 81, 177, 367, 401, 500, 761
ScrFI	CCNGG	4 cut(s)	242, 243, 371, 906
SduI	GDGCHC	1 cut(s)	912
Sfr303I	CCGCGG	1 cut(s)	561
SgrBI	CCGCGG	1 cut(s)	561
SinI	GGWCC	2 cut(s)	177, 367
SmaI	CCCGGG	1 cut(s)	243
Sse9I	AATT	4 cut(s)	405, 547, 646, 799
SsiI	CCGC	7 cut(s)	28, 498, 558, 560, 569, 1000, 1018
StyD4I	CCNGG	4 cut(s)	240, 241, 369, 904
TaaI	ACNGT	5 cut(s)	145, 187, 877, 916, 973
TaiI	ACGT	4 cut(s)	66, 112, 216, 222
TaqI	TCGA	6 cut(s)	150, 189, 198, 519, 551, 872
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	4 cut(s)	405, 547, 646, 799
TauI	GCSGC	2 cut(s)	560, 572
TfiI	GAWTC	2 cut(s)	334, 869
Tru1I	TTAA	5 cut(s)	378, 420, 645, 921, 1048
Tru9I	TTAA	5 cut(s)	378, 420, 645, 921, 1048
TscAI	CASTG	2 cut(s)	83, 919
TseFI	GTSAC	4 cut(s)	105, 110, 562, 787
Tsp45I	GTSAC	4 cut(s)	105, 110, 562, 787
TspDTI	ATGAA	1 cut(s)	963
TspGWI	ACGGA	5 cut(s)	69, 327, 336, 950, 1001
TspMI	CCCGGG	1 cut(s)	241
TspRI	CASTG	2 cut(s)	83, 919
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	177, 367
VspI	ATTAAT	1 cut(s)	645
XagI	CCTNNNNNAGG	1 cut(s)	311
XapI	RAATTY	1 cut(s)	799
XmaI	CCCGGG	1 cut(s)	241
XmiI	GTMKAC	2 cut(s)	189, 198
XmnI	GAANNNNTTC	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.