Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009966

Physical Location & Seq

Genomic Coordinates Forward (+)

6245001 .. 6247768

Gene Structure 2768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1055300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCGAAGTACGGCGAGGGCGACAAGCGGTGGATCGTGGAGGACAGGCCCGACGGAGCCAACGTCCACAACTGGCACTGGGCGGAGACCGACTGCCTTGGCTGGTCACGTGACCTCCTTGCTAAGCTCCTCAACAACCTCACCATCCTCGATGGCGAAGGCAACCTCCACCTCAGGACCAAGACCGTCGACAAGGTCGACGGCGAGGCCTACGTCAACGTCCGGAAGGGGAAGATCATCCCGGGATACGAAATCAGCCTCAATCTGTCGTGGGAGGGGGAGGCGAAGGACGGCGACGGGAAATCGCTGCTGAAGGTCGACGGAGTTGTGGAGATTCCTTATATTTCGGACGAGAACGCCGACGAGGACCCGGAGGTTAAGATTTCGGTGAAGGATGAGGGGCCGGTTGGGAGGAGGATTAAGGAGGCGATGGTGGCGAAGGGGAAGCCTTTGATTTTGGAAAAGGTTCGGGTCTATGTGGAGAGTATGGCTAAGGGCGGGCCTGCGAAGGAGGAAATTGAGGTTAAGAAGATTGCGCCGAAGAGTAATTCGACGGCGGCGGCGGCTGCGGCGGCAGCGAAGAAGGAGGTGGCTGTGGAGAAAGAGGAGGCGAAGAAGAAGGAGAGCAAGAAAGGGTTTAAGACTATTAGTTTGACAGAGAAGTTCAGTTGCAGGGCGAAAGATATGTTTGAGATTTTGATGGATGAGAATAGGTGGAAGGGTTTTACGCAGAGCAATGCGAAGATAAGCAAGGAGGTTGGAGGGCCGATCAGTATTTTTGATGGGTCGGTGACCGGTTCGAATTTGGAGTTGCAGAATGGGAGTTTGATTATGCAGAAGTGGAGATTTGGGAGCTGGCCTGATGGGATTGATTCGACGGTGAGGCTTACACTGGAAGAACCTGAACCTGGTCTCACTGTTGTTAAGCTAACACATACGAATATTCCTGAGGAAGACAGATATGGGAATGCGACTGTGGTGGAGAATACGGAGAGAGGATGGCGGGATCTAATCTTCCAGCGGATAAGGGCAGTTTTTGGTTTTGGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008047 GO:0008150 GO:0030234 GO:0031072 GO:0032781 GO:0043085 GO:0043462 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0051879 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AHSA1 Aha1_N

Protein Analysis

351

Amino Acids

38.86

Weight (kDa)

5.84

Isoelectric Point (pI)

27.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aha1_N	PF09229	29 - 165	1.2e-31	Activator of Hsp90 ATPase, N-terminal
AHSA1	PF08327	226 - 346	1.4e-13	Activator of Hsp90 ATPase homolog 1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12050 AT3G12050
fragaria_vesca	FvH4_6g21990
malus_domestica	MD12G1055300.v1.1 MD14G1054700.v1.1
prunus_persica	Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1
pyrus_communis	pycom12g04830 pycom14g04520
rosa_chinensis	RchiOBHm_Chr3g0479291
rosa_laevigata	RLG00000023586
rosa_multiflora	Rmu_sc0015378.1_g000002 Rmu_sc0026945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402430
rosa_rugosa	Rorug03G0174200
rosa_samantha	Rh3AG225200 Rh3BG257700 Rh3CG253400 Rh3DG249600
rosa_wichuraiana	Rw3G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	189, 198, 318
AccIII	TCCGGA	1 cut(s)	222
AclWI	GGATC	2 cut(s)	41, 1014
AcsI	RAATTY	1 cut(s)	802
AcuI	CTGAAG	1 cut(s)	332
AcvI	CACGTG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	908
AgeI	ACCGGT	1 cut(s)	794
AjnI	CCWGG	1 cut(s)	907
AluBI	AGCT	3 cut(s)	127, 855, 928
AluI	AGCT	3 cut(s)	127, 855, 928
Alw26I	GTCTC	2 cut(s)	80, 917
AlwI	GGATC	2 cut(s)	41, 1014
Ama87I	CYCGRG	1 cut(s)	241
Aor13HI	TCCGGA	1 cut(s)	222
AoxI	GGCC	6 cut(s)	47, 207, 401, 500, 764, 857
ApeKI	GCWGC	3 cut(s)	307, 566, 575
ApoI	RAATTY	1 cut(s)	802
ArsI	GACNNNNNNTTYG	2 cut(s)	634, 666
AsiGI	ACCGGT	1 cut(s)	794
Asp700I	GAANNNNTTC	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	6 cut(s)	48, 177, 367, 401, 500, 764
AsuC2I	CCSGG	3 cut(s)	242, 243, 371
AsuHPI	GGTGA	4 cut(s)	133, 400, 802, 892
AsuII	TTCGAA	1 cut(s)	800
AvaI	CYCGRG	1 cut(s)	241
AvaII	GGWCC	2 cut(s)	177, 367
AxyI	CCTNAGG	2 cut(s)	173, 948
BbrPI	CACGTG	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	960
BbvI	GCAGC	3 cut(s)	294, 553, 587
BccI	CCATC	7 cut(s)	146, 152, 424, 694, 776, 857, 993
BceAI	ACGGC	4 cut(s)	28, 217, 307, 570
BciT130I	CCWGG	1 cut(s)	909
BciVI	GTATCC	1 cut(s)	239
BcnI	CCSGG	3 cut(s)	242, 243, 371
BcoDI	GTCTC	2 cut(s)	80, 917
BfuI	GTATCC	1 cut(s)	239
BisI	GCNGC	8 cut(s)	308, 558, 561, 564, 567, 570, 573, 576
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	8 cut(s)	309, 559, 562, 565, 568, 571, 574, 577
Bme1390I	CCNGG	4 cut(s)	242, 243, 371, 909
Bme18I	GGWCC	2 cut(s)	177, 367
BmeT110I	CYCGRG	1 cut(s)	241
BmgT120I	GGNCC	6 cut(s)	48, 177, 367, 401, 500, 764
BmiI	GGNNCC	3 cut(s)	58, 369, 402
BmrFI	CCNGG	4 cut(s)	242, 243, 371, 909
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	960
Bpu10I	CCTNAGC	1 cut(s)	492
Bpu1102I	GCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	800
BpuMI	CCSGG	3 cut(s)	242, 243, 371
BsaAI	YACGTR	1 cut(s)	110
BsaI	GGTCTC	2 cut(s)	80, 917
BsaJI	CCNNGG	2 cut(s)	97, 241
BsaWI	WCCGGW	2 cut(s)	222, 794
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	908
Bse118I	RCCGGY	2 cut(s)	403, 794
Bse1I	ACTGG	3 cut(s)	77, 83, 897
Bse21I	CCTNAGG	2 cut(s)	173, 948
Bse3DI	GCAATG	1 cut(s)	742
BseAI	TCCGGA	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	909
BseDI	CCNNGG	2 cut(s)	97, 241
BseGI	GGATG	5 cut(s)	144, 237, 400, 709, 1004
BseLI	CCNNNNNNNGG	1 cut(s)	908
BseMI	GCAATG	1 cut(s)	742
BseMII	CTCAG	2 cut(s)	187, 939
BseNI	ACTGG	3 cut(s)	77, 83, 897
BseRI	GAGGAG	3 cut(s)	119, 427, 620
BseXI	GCAGC	3 cut(s)	294, 553, 587
BshFI	GGCC	6 cut(s)	49, 209, 403, 502, 766, 859
BshTI	ACCGGT	1 cut(s)	794
BsiHKCI	CYCGRG	1 cut(s)	241
BsiSI	CCGG	5 cut(s)	223, 242, 371, 404, 795
BslI	CCNNNNNNNGG	1 cut(s)	908
BsmAI	GTCTC	2 cut(s)	80, 917
BsmI	GAATGC	1 cut(s)	973
BsnI	GGCC	6 cut(s)	49, 209, 403, 502, 766, 859
Bso31I	GGTCTC	2 cut(s)	80, 917
BsoBI	CYCGRG	1 cut(s)	241
Bsp119I	TTCGAA	1 cut(s)	800
Bsp13I	TCCGGA	1 cut(s)	222
Bsp143I	GATC	4 cut(s)	33, 234, 768, 1006
Bsp1720I	GCTNAGC	1 cut(s)	123
BspANI	GGCC	6 cut(s)	49, 209, 403, 502, 766, 859
BspCNI	CTCAG	2 cut(s)	186, 940
BspEI	TCCGGA	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	58, 369, 402
BspPI	GGATC	2 cut(s)	41, 1014
BspT104I	TTCGAA	1 cut(s)	800
BspTNI	GGTCTC	2 cut(s)	80, 917
BsrDI	GCAATG	1 cut(s)	742
BsrFI	RCCGGY	2 cut(s)	403, 794
BsrI	ACTGG	3 cut(s)	77, 83, 897
BssAI	RCCGGY	2 cut(s)	403, 794
BssECI	CCNNGG	2 cut(s)	97, 241
BssMI	GATC	4 cut(s)	33, 234, 768, 1006
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	909
Bst4CI	ACNGT	4 cut(s)	187, 880, 919, 976
Bst6I	CTCTTC	1 cut(s)	536
BstBAI	YACGTR	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	800
BstC8I	GCNNGC	3 cut(s)	500, 504, 857
BstDEI	CTNAG	4 cut(s)	123, 173, 492, 948
BstEII	GGTNACC	1 cut(s)	790
BstF5I	GGATG	5 cut(s)	144, 237, 400, 709, 1004
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	4 cut(s)	36, 237, 771, 1009
BstMAI	GTCTC	2 cut(s)	80, 917
BstMBI	GATC	4 cut(s)	33, 234, 768, 1006
BstMWI	GCNNNNNNNGC	6 cut(s)	434, 563, 566, 569, 572, 575
BstNI	CCWGG	1 cut(s)	909
BstPI	GGTNACC	1 cut(s)	790
BstSCI	CCNGG	4 cut(s)	240, 241, 369, 907
BstV1I	GCAGC	3 cut(s)	294, 553, 587
BstV2I	GAAGAC	1 cut(s)	960
BstX2I	RGATCY	1 cut(s)	1006
BstYI	RGATCY	1 cut(s)	1006
Bsu36I	CCTNAGG	2 cut(s)	173, 948
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	6 cut(s)	49, 209, 403, 502, 766, 859
BtgZI	GCGATG	1 cut(s)	443
BtsCI	GGATG	5 cut(s)	144, 237, 400, 709, 1004
BtsIMutI	CAGTG	3 cut(s)	76, 890, 915
Cac8I	GCNNGC	3 cut(s)	500, 504, 857
CfoI	GCGC	1 cut(s)	538
Cfr10I	RCCGGY	2 cut(s)	403, 794
Cfr13I	GGNCC	6 cut(s)	48, 177, 367, 401, 500, 764
Cfr9I	CCCGGG	1 cut(s)	241
CsiI	ACCWGGT	1 cut(s)	907
Csp6I	GTAC	1 cut(s)	10
CspAI	ACCGGT	1 cut(s)	794
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	4 cut(s)	123, 173, 492, 948
DpnI	GATC	4 cut(s)	35, 236, 770, 1008
DpnII	GATC	4 cut(s)	33, 234, 768, 1006
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
EciI	GGCGGA	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	97
Eco147I	AGGCCT	1 cut(s)	209
Eco31I	GGTCTC	2 cut(s)	80, 917
Eco47I	GGWCC	2 cut(s)	177, 367
Eco57I	CTGAAG	1 cut(s)	332
Eco72I	CACGTG	1 cut(s)	110
Eco81I	CCTNAGG	2 cut(s)	173, 948
Eco88I	CYCGRG	1 cut(s)	241
Eco91I	GGTNACC	1 cut(s)	790
EcoO109I	RGGNCCY	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	790
EcoRII	CCWGG	1 cut(s)	907
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaiI	YATR	7 cut(s)	342, 477, 488, 686, 833, 936, 963
FauI	CCCGC	2 cut(s)	491, 996
FblI	GTMKAC	3 cut(s)	189, 198, 318
Fnu4HI	GCNGC	8 cut(s)	308, 558, 561, 564, 567, 570, 573, 576
FokI	GGATG	5 cut(s)	131, 224, 407, 716, 1011
Fsp4HI	GCNGC	8 cut(s)	308, 558, 561, 564, 567, 570, 573, 576
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	8 cut(s)	308, 558, 561, 564, 567, 570, 573, 576
HaeIII	GGCC	6 cut(s)	49, 209, 403, 502, 766, 859
HapII	CCGG	5 cut(s)	223, 242, 371, 404, 795
HhaI	GCGC	1 cut(s)	538
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HincII	GTYRAC	4 cut(s)	190, 199, 217, 319
HindII	GTYRAC	4 cut(s)	190, 199, 217, 319
HinfI	GANTC	2 cut(s)	334, 872
HpaII	CCGG	5 cut(s)	223, 242, 371, 404, 795
HphI	GGTGA	4 cut(s)	133, 400, 802, 892
Hpy166II	GTNNAC	5 cut(s)	67, 190, 199, 217, 319
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	3 cut(s)	175, 223, 947
Hpy8I	GTNNAC	5 cut(s)	67, 190, 199, 217, 319
Hpy99I	CGWCG	8 cut(s)	56, 191, 203, 299, 323, 365, 556, 880
HpyCH4III	ACNGT	4 cut(s)	187, 880, 919, 976
HpyCH4IV	ACGT	4 cut(s)	63, 109, 213, 219
HpyCH4V	TGCA	3 cut(s)	672, 814, 835
HpyF10VI	GCNNNNNNNGC	6 cut(s)	434, 563, 566, 569, 572, 575
HpyF3I	CTNAG	4 cut(s)	123, 173, 492, 948
HpySE526I	ACGT	4 cut(s)	63, 109, 213, 219
HspAI	GCGC	1 cut(s)	536
Kpn2I	TCCGGA	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	33, 234, 768, 1006
LmnI	GCTCC	3 cut(s)	56, 132, 852
Lsp1109I	GCAGC	3 cut(s)	294, 553, 587
MabI	ACCWGGT	1 cut(s)	907
MaeII	ACGT	4 cut(s)	63, 109, 213, 219
MaeIII	GTNAC	3 cut(s)	105, 110, 790
MalI	GATC	4 cut(s)	35, 236, 770, 1008
MboI	GATC	4 cut(s)	33, 234, 768, 1006
MflI	RGATCY	1 cut(s)	1006
MluCI	AATT	3 cut(s)	516, 547, 802
MmeI	TCCRAC	1 cut(s)	739
MroI	TCCGGA	1 cut(s)	222
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	6 cut(s)	378, 420, 525, 639, 924, 1051
MspA1I	CMGCKG	1 cut(s)	1021
MspI	CCGG	5 cut(s)	223, 242, 371, 404, 795
MspR9I	CCNGG	4 cut(s)	242, 243, 371, 909
Mva1269I	GAATGC	1 cut(s)	973
MvaI	CCWGG	1 cut(s)	909
MwoI	GCNNNNNNNGC	6 cut(s)	434, 563, 566, 569, 572, 575
NciI	CCSGG	3 cut(s)	242, 243, 371
NdeII	GATC	4 cut(s)	33, 234, 768, 1006
NlaIV	GGNNCC	3 cut(s)	58, 369, 402
NmuCI	GTSAC	3 cut(s)	105, 110, 790
NspV	TTCGAA	1 cut(s)	800
PceI	AGGCCT	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	4 cut(s)	18, 60, 195, 357
PctI	GAATGC	1 cut(s)	973
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	334, 872
PflFI	GACNNNGTC	1 cut(s)	194
PinAI	ACCGGT	1 cut(s)	794
PkrI	GCNGC	8 cut(s)	309, 559, 562, 565, 568, 571, 574, 577
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
Ppu21I	YACGTR	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	907
PspCI	CACGTG	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	790
PspGI	CCWGG	1 cut(s)	907
PspN4I	GGNNCC	3 cut(s)	58, 369, 402
PspPI	GGNCC	6 cut(s)	48, 177, 367, 401, 500, 764
PspPPI	RGGWCCY	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	1006
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SalI	GTCGAC	3 cut(s)	188, 197, 317
SaqAI	TTAA	6 cut(s)	378, 420, 525, 639, 924, 1051
SatI	GCNGC	8 cut(s)	308, 558, 561, 564, 567, 570, 573, 576
Sau3AI	GATC	4 cut(s)	33, 234, 768, 1006
Sau96I	GGNCC	6 cut(s)	48, 177, 367, 401, 500, 764
ScrFI	CCNGG	4 cut(s)	242, 243, 371, 909
SexAI	ACCWGGT	1 cut(s)	907
SfuI	TTCGAA	1 cut(s)	800
SinI	GGWCC	2 cut(s)	177, 367
SmaI	CCCGGG	1 cut(s)	243
Sse9I	AATT	3 cut(s)	516, 547, 802
SseBI	AGGCCT	1 cut(s)	209
SspI	AATATT	1 cut(s)	943
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	4 cut(s)	240, 241, 369, 907
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	4 cut(s)	187, 880, 919, 976
TaiI	ACGT	4 cut(s)	66, 112, 216, 222
TaqI	TCGA	7 cut(s)	150, 189, 198, 318, 551, 800, 875
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	3 cut(s)	516, 547, 802
TauI	GCSGC	5 cut(s)	560, 563, 566, 572, 575
TfiI	GAWTC	2 cut(s)	334, 872
Tru1I	TTAA	6 cut(s)	378, 420, 525, 639, 924, 1051
Tru9I	TTAA	6 cut(s)	378, 420, 525, 639, 924, 1051
TscAI	CASTG	3 cut(s)	83, 897, 922
TseFI	GTSAC	3 cut(s)	105, 110, 790
TseI	GCWGC	3 cut(s)	307, 566, 575
Tsp45I	GTSAC	3 cut(s)	105, 110, 790
TspGWI	ACGGA	3 cut(s)	69, 336, 1004
TspMI	CCCGGG	1 cut(s)	241
TspRI	CASTG	3 cut(s)	83, 897, 922
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	177, 367
XapI	RAATTY	1 cut(s)	802
XmaI	CCCGGG	1 cut(s)	241
XmiI	GTMKAC	3 cut(s)	189, 198, 318
XmnI	GAANNNNTTC	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.