Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009966

Physical Location & Seq

Genomic Coordinates Forward (+)

4749147 .. 4750548

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCGAAGTACGGCGAGGGCGACAAGCGGTGGATCGTGGAGGACAGGCCCGACGGAGCCAACGTCCACAACTGGCACTGGGCGGAGACCGACTGCCTTGGCTGGTCACGTGACCTCCTTGCTAAGCTCCTCAACAACCTCACCATCCTCGATGGCGAAGGCAACCTCCACCTCAAGACCAAGACCGTCGACAAGGTCGACGGCGAGGCCTACGTCAACGTCCGGAAGGGGAAGATCATCCCGGGATACGAAATCAGCCTCAATCTGTCGTGGGAGGGGGAGGCGAAGGACGGCGACGGGAAATCGCTGCTGAAGGTCGACGGAGTTGTGGAGATTCCTTATATTTCAGACGAGAACGCCGACGAGGACCCGGAGGTTAAGATTTCGGTGAAGGATGAGGGGCCGGTTGGGAGGAGGATTAAGGAGGCGATGGTGGCGAAGGGGAAGCCTTTGATTTTGGAAAAGGTTAGGGTCTATGTGGAGAGTATGGCGAAGGGCGGGCCTGCGAAGGAGGAAATTGAGGTTAAGAAGATTGCGCCGAAGAGTAATTCGACGGCGGCGGTGGCTGCGGCGGCAGCGAAGGAGGTAGCTGTGGAGAAAGAGGAGGCGAAGAAGGAGAGCAAGAAAGGGTTTAAGACGATTAGTTTGACAGAGAAGTTCAGTTGCAGGGCGAAAGATATGTTTGAGATTTTGATGGATGACAATAGGTGGAAGGGTTTTACGCAGAGCAATGCGAAGATAAGCAAGGAGGTTGGAGGGCCGATCGGTATTTTTGATGGGTCGGTGACCGGTTCGAATTTGGAGTTGCAGAATGGGAGTTTGATTGTGCAGAAGTGGAGATTTGGGAGCTGGCCTGATGGGATTGATTCGACGGTGAGGCTTACACTTGAAGAACCTGAACCTGGTCTCACTGTTGTTAAGCTAACACATACGAATGTTCCTGAGGAAGACAGATGGGAATGCGACTGTGGTGGAGAATACGGAGAGAGGATGGCGGGATCTAATCTTCCAGCGGATAAGGGCAGTTTTTGGTTTTGGCATTTAAGATATTCAAGTAGGTTTTCTCTTGGAATTGTAGAATTTGATGGTTTTGGAAGCGTGAATTCAATGTTTGGAATTAACTTACCGGGTCTAAATGCTTTGAATCTAAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008047 GO:0008150 GO:0030234 GO:0031072 GO:0032781 GO:0043085 GO:0043462 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0051879 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AHSA1 Aha1_N

Protein Analysis

386

Amino Acids

42.54

Weight (kDa)

5.44

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12050 AT3G12050
fragaria_vesca	FvH4_6g21990
malus_domestica	MD12G1055300.v1.1 MD14G1054700.v1.1
prunus_persica	Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1
pyrus_communis	pycom12g04830 pycom14g04520
rosa_chinensis	RchiOBHm_Chr3g0479291
rosa_laevigata	RLG00000023586
rosa_multiflora	Rmu_sc0015378.1_g000002 Rmu_sc0026945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402430
rosa_rugosa	Rorug03G0174200
rosa_samantha	Rh3AG225200 Rh3BG257700 Rh3CG253400 Rh3DG249600
rosa_wichuraiana	Rw3G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	189, 198, 318
AccIII	TCCGGA	1 cut(s)	222
AciI	CCGC	9 cut(s)	28, 83, 498, 557, 560, 569, 572, 995, 1013
AclWI	GGATC	2 cut(s)	41, 1006
AcsI	RAATTY	3 cut(s)	796, 1079, 1102
AcuI	CTGAAG	1 cut(s)	332
AcvI	CACGTG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	902
AgeI	ACCGGT	1 cut(s)	788
AgsI	TTSAA	4 cut(s)	890, 1053, 1107, 1144
AjnI	CCWGG	1 cut(s)	901
AluBI	AGCT	4 cut(s)	127, 590, 849, 922
AluI	AGCT	4 cut(s)	127, 590, 849, 922
Alw26I	GTCTC	2 cut(s)	80, 911
AlwI	GGATC	2 cut(s)	41, 1006
Ama87I	CYCGRG	1 cut(s)	241
Aor13HI	TCCGGA	1 cut(s)	222
AoxI	GGCC	6 cut(s)	47, 207, 401, 500, 758, 851
ApeKI	GCWGC	3 cut(s)	307, 566, 575
ApoI	RAATTY	3 cut(s)	796, 1079, 1102
ArsI	GACNNNNNNTTYG	2 cut(s)	628, 660
AsiGI	ACCGGT	1 cut(s)	788
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	5 cut(s)	48, 367, 401, 500, 758
AsuC2I	CCSGG	4 cut(s)	242, 243, 371, 1128
AsuHPI	GGTGA	4 cut(s)	133, 400, 796, 886
AsuII	TTCGAA	1 cut(s)	794
AvaI	CYCGRG	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	367
AxyI	CCTNAGG	1 cut(s)	942
BbrPI	CACGTG	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	954
BbvI	GCAGC	3 cut(s)	294, 553, 587
BccI	CCATC	9 cut(s)	146, 152, 424, 688, 770, 851, 948, 985, 1079
BceAI	ACGGC	4 cut(s)	28, 217, 307, 570
BciT130I	CCWGG	1 cut(s)	903
BciVI	GTATCC	1 cut(s)	239
BcnI	CCSGG	4 cut(s)	242, 243, 371, 1128
BcoDI	GTCTC	2 cut(s)	80, 911
BfuI	GTATCC	1 cut(s)	239
BisI	GCNGC	6 cut(s)	308, 558, 567, 570, 573, 576
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	6 cut(s)	309, 559, 568, 571, 574, 577
Bme1390I	CCNGG	5 cut(s)	242, 243, 371, 903, 1128
Bme18I	GGWCC	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	241
BmgT120I	GGNCC	5 cut(s)	48, 367, 401, 500, 758
BmiI	GGNNCC	3 cut(s)	58, 369, 402
BmrFI	CCNGG	5 cut(s)	242, 243, 371, 903, 1128
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	954
Bpu1102I	GCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	794
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	4 cut(s)	242, 243, 371, 1128
BsaAI	YACGTR	1 cut(s)	110
BsaI	GGTCTC	2 cut(s)	80, 911
BsaJI	CCNNGG	2 cut(s)	97, 241
BsaWI	WCCGGW	2 cut(s)	222, 788
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	902
Bse118I	RCCGGY	2 cut(s)	403, 788
Bse1I	ACTGG	2 cut(s)	77, 83
Bse21I	CCTNAGG	1 cut(s)	942
Bse3DI	GCAATG	1 cut(s)	736
BseAI	TCCGGA	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	903
BseDI	CCNNGG	2 cut(s)	97, 241
BseGI	GGATG	5 cut(s)	144, 237, 400, 703, 996
BseLI	CCNNNNNNNGG	1 cut(s)	902
BseMI	GCAATG	1 cut(s)	736
BseMII	CTCAG	1 cut(s)	933
BseNI	ACTGG	2 cut(s)	77, 83
BseRI	GAGGAG	3 cut(s)	119, 427, 617
BseXI	GCAGC	3 cut(s)	294, 553, 587
BsgI	GTGCAG	1 cut(s)	848
Bsh1285I	CGRYCG	1 cut(s)	765
BshFI	GGCC	6 cut(s)	49, 209, 403, 502, 760, 853
BshTI	ACCGGT	1 cut(s)	788
BsiEI	CGRYCG	1 cut(s)	765
BsiHKCI	CYCGRG	1 cut(s)	241
BsiSI	CCGG	6 cut(s)	223, 242, 371, 404, 789, 1127
BslI	CCNNNNNNNGG	1 cut(s)	902
BsmAI	GTCTC	2 cut(s)	80, 911
BsmI	GAATGC	1 cut(s)	965
BsnI	GGCC	6 cut(s)	49, 209, 403, 502, 760, 853
Bso31I	GGTCTC	2 cut(s)	80, 911
BsoBI	CYCGRG	1 cut(s)	241
Bsp119I	TTCGAA	1 cut(s)	794
Bsp13I	TCCGGA	1 cut(s)	222
Bsp143I	GATC	4 cut(s)	33, 234, 762, 998
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	9 cut(s)	28, 83, 498, 557, 560, 569, 572, 995, 1013
BspANI	GGCC	6 cut(s)	49, 209, 403, 502, 760, 853
BspCNI	CTCAG	1 cut(s)	934
BspEI	TCCGGA	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	58, 369, 402
BspPI	GGATC	2 cut(s)	41, 1006
BspT104I	TTCGAA	1 cut(s)	794
BspTNI	GGTCTC	2 cut(s)	80, 911
BsrDI	GCAATG	1 cut(s)	736
BsrFI	RCCGGY	2 cut(s)	403, 788
BsrI	ACTGG	2 cut(s)	77, 83
BssAI	RCCGGY	2 cut(s)	403, 788
BssECI	CCNNGG	2 cut(s)	97, 241
BssMI	GATC	4 cut(s)	33, 234, 762, 998
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	903
Bst4CI	ACNGT	4 cut(s)	187, 874, 913, 968
Bst6I	CTCTTC	1 cut(s)	536
BstBAI	YACGTR	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	794
BstC8I	GCNNGC	3 cut(s)	500, 504, 851
BstDEI	CTNAG	3 cut(s)	123, 942, 1148
BstEII	GGTNACC	1 cut(s)	784
BstF5I	GGATG	5 cut(s)	144, 237, 400, 703, 996
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	4 cut(s)	36, 237, 765, 1001
BstMAI	GTCTC	2 cut(s)	80, 911
BstMBI	GATC	4 cut(s)	33, 234, 762, 998
BstMCI	CGRYCG	1 cut(s)	765
BstMWI	GCNNNNNNNGC	5 cut(s)	434, 563, 566, 572, 575
BstNI	CCWGG	1 cut(s)	903
BstPI	GGTNACC	1 cut(s)	784
BstSCI	CCNGG	5 cut(s)	240, 241, 369, 901, 1126
BstV1I	GCAGC	3 cut(s)	294, 553, 587
BstV2I	GAAGAC	1 cut(s)	954
BstX2I	RGATCY	1 cut(s)	998
BstYI	RGATCY	1 cut(s)	998
Bsu36I	CCTNAGG	1 cut(s)	942
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	6 cut(s)	49, 209, 403, 502, 760, 853
BtgZI	GCGATG	1 cut(s)	443
BtsCI	GGATG	5 cut(s)	144, 237, 400, 703, 996
BtsIMutI	CAGTG	2 cut(s)	76, 909
Cac8I	GCNNGC	3 cut(s)	500, 504, 851
CfoI	GCGC	1 cut(s)	538
Cfr10I	RCCGGY	2 cut(s)	403, 788
Cfr13I	GGNCC	5 cut(s)	48, 367, 401, 500, 758
Cfr9I	CCCGGG	1 cut(s)	241
CsiI	ACCWGGT	1 cut(s)	901
Csp6I	GTAC	1 cut(s)	10
CspAI	ACCGGT	1 cut(s)	788
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	3 cut(s)	123, 942, 1148
DpnI	GATC	4 cut(s)	35, 236, 764, 1000
DpnII	GATC	4 cut(s)	33, 234, 762, 998
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
EciI	GGCGGA	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	97
Eco147I	AGGCCT	1 cut(s)	209
Eco31I	GGTCTC	2 cut(s)	80, 911
Eco47I	GGWCC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	332
Eco72I	CACGTG	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	942
Eco88I	CYCGRG	1 cut(s)	241
Eco91I	GGTNACC	1 cut(s)	784
EcoO109I	RGGNCCY	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	784
EcoRI	GAATTC	1 cut(s)	1102
EcoRII	CCWGG	1 cut(s)	901
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaiI	YATR	5 cut(s)	342, 477, 488, 680, 930
FauI	CCCGC	2 cut(s)	491, 988
FblI	GTMKAC	3 cut(s)	189, 198, 318
Fnu4HI	GCNGC	6 cut(s)	308, 558, 567, 570, 573, 576
FokI	GGATG	5 cut(s)	131, 224, 407, 710, 1003
Fsp4HI	GCNGC	6 cut(s)	308, 558, 567, 570, 573, 576
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	6 cut(s)	308, 558, 567, 570, 573, 576
HaeIII	GGCC	6 cut(s)	49, 209, 403, 502, 760, 853
HapII	CCGG	6 cut(s)	223, 242, 371, 404, 789, 1127
HhaI	GCGC	1 cut(s)	538
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HincII	GTYRAC	4 cut(s)	190, 199, 217, 319
HindII	GTYRAC	4 cut(s)	190, 199, 217, 319
HinfI	GANTC	3 cut(s)	334, 866, 1144
HpaII	CCGG	6 cut(s)	223, 242, 371, 404, 789, 1127
HphI	GGTGA	4 cut(s)	133, 400, 796, 886
Hpy166II	GTNNAC	5 cut(s)	67, 190, 199, 217, 319
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	3 cut(s)	175, 223, 941
Hpy8I	GTNNAC	5 cut(s)	67, 190, 199, 217, 319
Hpy99I	CGWCG	8 cut(s)	56, 191, 203, 299, 323, 365, 556, 874
HpyCH4III	ACNGT	4 cut(s)	187, 874, 913, 968
HpyCH4IV	ACGT	4 cut(s)	63, 109, 213, 219
HpyCH4V	TGCA	3 cut(s)	666, 808, 829
HpyF10VI	GCNNNNNNNGC	5 cut(s)	434, 563, 566, 572, 575
HpyF3I	CTNAG	3 cut(s)	123, 942, 1148
HpySE526I	ACGT	4 cut(s)	63, 109, 213, 219
HspAI	GCGC	1 cut(s)	536
Kpn2I	TCCGGA	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	33, 234, 762, 998
LmnI	GCTCC	3 cut(s)	56, 132, 846
Lsp1109I	GCAGC	3 cut(s)	294, 553, 587
MabI	ACCWGGT	1 cut(s)	901
MaeII	ACGT	4 cut(s)	63, 109, 213, 219
MaeIII	GTNAC	3 cut(s)	105, 110, 784
MalI	GATC	4 cut(s)	35, 236, 764, 1000
MboI	GATC	4 cut(s)	33, 234, 762, 998
MboII	GAAGA	8 cut(s)	244, 541, 553, 622, 748, 902, 959, 998
MflI	RGATCY	1 cut(s)	998
MluCI	AATT	7 cut(s)	516, 547, 796, 1071, 1079, 1102, 1116
MmeI	TCCRAC	1 cut(s)	733
MroI	TCCGGA	1 cut(s)	222
MseI	TTAA	7 cut(s)	378, 420, 525, 633, 918, 1043, 1119
MslI	CAYNNNNRTG	1 cut(s)	933
MspA1I	CMGCKG	1 cut(s)	1013
MspI	CCGG	6 cut(s)	223, 242, 371, 404, 789, 1127
MspR9I	CCNGG	5 cut(s)	242, 243, 371, 903, 1128
Mva1269I	GAATGC	1 cut(s)	965
MvaI	CCWGG	1 cut(s)	903
MwoI	GCNNNNNNNGC	5 cut(s)	434, 563, 566, 572, 575
NciI	CCSGG	4 cut(s)	242, 243, 371, 1128
NdeII	GATC	4 cut(s)	33, 234, 762, 998
NlaIV	GGNNCC	3 cut(s)	58, 369, 402
NmuCI	GTSAC	3 cut(s)	105, 110, 784
NspV	TTCGAA	1 cut(s)	794
PceI	AGGCCT	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	4 cut(s)	18, 60, 195, 357
PctI	GAATGC	1 cut(s)	965
PfeI	GAWTC	3 cut(s)	334, 866, 1144
PflFI	GACNNNGTC	1 cut(s)	194
PinAI	ACCGGT	1 cut(s)	788
PkrI	GCNGC	6 cut(s)	309, 559, 568, 571, 574, 577
Ple19I	CGATCG	1 cut(s)	765
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
Ppu21I	YACGTR	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	901
PspCI	CACGTG	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	901
PspN4I	GGNNCC	3 cut(s)	58, 369, 402
PspPI	GGNCC	5 cut(s)	48, 367, 401, 500, 758
PspPPI	RGGWCCY	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	998
PsyI	GACNNNGTC	1 cut(s)	194
PvuI	CGATCG	1 cut(s)	765
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	933
SalI	GTCGAC	3 cut(s)	188, 197, 317
SaqAI	TTAA	7 cut(s)	378, 420, 525, 633, 918, 1043, 1119
SatI	GCNGC	6 cut(s)	308, 558, 567, 570, 573, 576
Sau3AI	GATC	4 cut(s)	33, 234, 762, 998
Sau96I	GGNCC	5 cut(s)	48, 367, 401, 500, 758
ScrFI	CCNGG	5 cut(s)	242, 243, 371, 903, 1128
SexAI	ACCWGGT	1 cut(s)	901
SfuI	TTCGAA	1 cut(s)	794
SinI	GGWCC	1 cut(s)	367
SmaI	CCCGGG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	7 cut(s)	516, 547, 796, 1071, 1079, 1102, 1116
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	9 cut(s)	28, 83, 498, 557, 560, 569, 572, 995, 1013
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	5 cut(s)	240, 241, 369, 901, 1126
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	4 cut(s)	187, 874, 913, 968
TaiI	ACGT	4 cut(s)	66, 112, 216, 222
TaqI	TCGA	7 cut(s)	150, 189, 198, 318, 551, 794, 869
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	7 cut(s)	516, 547, 796, 1071, 1079, 1102, 1116
TauI	GCSGC	3 cut(s)	560, 572, 575
TfiI	GAWTC	3 cut(s)	334, 866, 1144
Tru1I	TTAA	7 cut(s)	378, 420, 525, 633, 918, 1043, 1119
Tru9I	TTAA	7 cut(s)	378, 420, 525, 633, 918, 1043, 1119
TscAI	CASTG	2 cut(s)	83, 916
TseFI	GTSAC	3 cut(s)	105, 110, 784
TseI	GCWGC	3 cut(s)	307, 566, 575
Tsp45I	GTSAC	3 cut(s)	105, 110, 784
TspGWI	ACGGA	3 cut(s)	69, 336, 996
TspMI	CCCGGG	1 cut(s)	241
TspRI	CASTG	2 cut(s)	83, 916
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	3 cut(s)	796, 1079, 1102
XmaI	CCCGGG	1 cut(s)	241
XmiI	GTMKAC	3 cut(s)	189, 198, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.