Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009966

Physical Location & Seq

Genomic Coordinates Reverse (-)

25648966 .. 25650222

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023586

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCGAAGTACGGCGAGGGCGACAAGCGGTGGATCGTGGAAGACAGACCCGACGGAGCGAACGTCCACAACTGGCACTGGGCCGAGACCGATTGCCTGGGCTGGTCACGTGACCTCCTCACCAAGCTCCTCTCCAACCTCACCATCCTCGACGGCGAAGGCGACCTCTTCATCAAGACCAACAAAGTCGAGAAGGTCGAAGGCGACGCCTACGTCAACATTCGCAAGGGCAAGATCATCCCCGGCTACGAAATCAGCCTCAATCTCTCATGGGAGGGCGAGGCCAGAGACTCCGACGGAAAATCGCTGCTCAAGGTCGACGGCGCCGTCGAGATTCCCTACATCGCCGACGAGAATGCCGACGAGGACCCCGAGGTTAAGGTCTCGGTGAAGGACGAGGGCCCCATTGGGAGGAGGATTAAGGAGGCTATGGTGGCGAAGGGGAAGCCTGTGATTTTGGAGAAGGTTCGGGTTTATGTGCAGAGTATGGCGCAGGGTGGGCCGGCCAAGGATGAGGCGGAGGCGAAGAAGATTGCGCCGAAGACTAATAATAATTCGACGAGTTCCGGGGCGGCGGCGAAGAAGGAGGTGGTGGTGGAGAAGAAGGAGGTGAAGAAGAAGGAGAGCAAGAAGGGATACGGGAACGCCACTGTGGTAGAGAATACTGAGAGAGGATGGCGGGATCTTATCTTTCAGAGGATAAGGGCAGTTTTTGGTTTCGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008047 GO:0008150 GO:0030234 GO:0031072 GO:0032781 GO:0043085 GO:0043462 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0051879 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AHSA1 Aha1_N

Protein Analysis

243

Amino Acids

26.81

Weight (kDa)

6.79

Isoelectric Point (pI)

21.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aha1_N	PF09229	29 - 165	4.8e-34	Activator of Hsp90 ATPase, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12050 AT3G12050
fragaria_vesca	FvH4_6g21990
malus_domestica	MD12G1055300.v1.1 MD14G1054700.v1.1
prunus_persica	Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1
pyrus_communis	pycom12g04830 pycom14g04520
rosa_chinensis	RchiOBHm_Chr3g0479291
rosa_laevigata	RLG00000023586
rosa_multiflora	Rmu_sc0015378.1_g000002 Rmu_sc0026945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402430
rosa_rugosa	Rorug03G0174200
rosa_samantha	Rh3AG225200 Rh3BG257700 Rh3CG253400 Rh3DG249600
rosa_wichuraiana	Rw3G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	212, 326
AccB1I	GGYRCC	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	318
AciI	CCGC	5 cut(s)	28, 518, 572, 575, 679
AclWI	GGATC	2 cut(s)	41, 690
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	723
AcvI	CACGTG	1 cut(s)	110
AcyI	GRCGYC	2 cut(s)	207, 324
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	411
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw26I	GTCTC	3 cut(s)	80, 282, 388
AlwI	GGATC	2 cut(s)	41, 690
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	5 cut(s)	81, 282, 400, 500, 504
ApaI	GGGCCC	1 cut(s)	404
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	723
AspLEI	GCGC	3 cut(s)	326, 493, 538
AspS9I	GGNCC	5 cut(s)	81, 367, 400, 401, 500
AsuC2I	CCSGG	2 cut(s)	243, 568
AsuHPI	GGTGA	4 cut(s)	112, 133, 400, 622
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	367
BaeGI	GKGCMC	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	404
BbrPI	CACGTG	1 cut(s)	110
BbsI	GAAGAC	2 cut(s)	48, 548
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	2 cut(s)	152, 669
BceAI	ACGGC	4 cut(s)	28, 169, 311, 337
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	1 cut(s)	98
BciVI	GTATCC	1 cut(s)	629
BcnI	CCSGG	2 cut(s)	243, 568
BcoDI	GTCTC	3 cut(s)	80, 282, 388
BfoI	RGCGCY	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	629
BisI	GCNGC	3 cut(s)	308, 573, 576
BlsI	GCNGC	3 cut(s)	309, 574, 577
Bme1390I	CCNGG	3 cut(s)	98, 243, 568
Bme18I	GGWCC	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	5 cut(s)	81, 367, 400, 401, 500
BmiI	GGNNCC	4 cut(s)	325, 369, 402, 403
BmrFI	CCNGG	3 cut(s)	98, 243, 568
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	2 cut(s)	48, 548
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	2 cut(s)	243, 568
BsaAI	YACGTR	1 cut(s)	110
BsaHI	GRCGYC	2 cut(s)	207, 324
BsaI	GGTCTC	2 cut(s)	80, 388
BsaJI	CCNNGG	5 cut(s)	97, 241, 372, 507, 567
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	2 cut(s)	77, 83
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	5 cut(s)	97, 241, 372, 507, 567
BseGI	GGATG	4 cut(s)	144, 237, 517, 680
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	2 cut(s)	77, 83
BseRI	GAGGAG	3 cut(s)	107, 119, 427
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	500
BshFI	GGCC	5 cut(s)	83, 284, 402, 502, 506
BshNI	GGYRCC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	243, 503, 567
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmAI	GTCTC	3 cut(s)	80, 282, 388
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	5 cut(s)	83, 284, 402, 502, 506
Bso31I	GGTCTC	2 cut(s)	80, 388
BsoBI	CYCGRG	1 cut(s)	371
Bsp120I	GGGCCC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	3 cut(s)	33, 234, 682
BspACI	CCGC	5 cut(s)	28, 518, 572, 575, 679
BspANI	GGCC	5 cut(s)	83, 284, 402, 502, 506
BspCNI	CTCAG	1 cut(s)	658
BspLI	GGNNCC	4 cut(s)	325, 369, 402, 403
BspPI	GGATC	2 cut(s)	41, 690
BspT107I	GGYRCC	1 cut(s)	323
BspTNI	GGTCTC	2 cut(s)	80, 388
BsrFI	RCCGGY	1 cut(s)	502
BsrI	ACTGG	2 cut(s)	77, 83
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	5 cut(s)	97, 241, 372, 507, 567
BssMI	GATC	3 cut(s)	33, 234, 682
BssNI	GRCGYC	2 cut(s)	207, 324
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	652
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	2 cut(s)	207, 324
BstBAI	YACGTR	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	1 cut(s)	666
BstF5I	GGATG	4 cut(s)	144, 237, 517, 680
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	3 cut(s)	326, 493, 538
BstKTI	GATC	3 cut(s)	36, 237, 685
BstMAI	GTCTC	3 cut(s)	80, 282, 388
BstMBI	GATC	3 cut(s)	33, 234, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 499
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	96, 241, 566
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	1 cut(s)	294
BstV2I	GAAGAC	2 cut(s)	48, 548
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
BsuI	GTATCC	1 cut(s)	629
BsuRI	GGCC	5 cut(s)	83, 284, 402, 502, 506
BtgZI	GCGATG	1 cut(s)	328
BtsCI	GGATG	4 cut(s)	144, 237, 517, 680
BtsIMutI	CAGTG	2 cut(s)	76, 648
Cac8I	GCNNGC	1 cut(s)	504
CfoI	GCGC	3 cut(s)	326, 493, 538
Cfr10I	RCCGGY	1 cut(s)	502
Cfr13I	GGNCC	5 cut(s)	81, 367, 400, 401, 500
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	1 cut(s)	270
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	666
DinI	GGCGCC	1 cut(s)	325
DpnI	GATC	3 cut(s)	35, 236, 684
DpnII	GATC	3 cut(s)	33, 234, 682
DrdI	GACNNNNNNGTC	2 cut(s)	212, 326
DseDI	GACNNNNNNGTC	2 cut(s)	212, 326
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	533
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	404
Eco31I	GGTCTC	2 cut(s)	80, 388
Eco47I	GGWCC	1 cut(s)	367
Eco72I	CACGTG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	371
EcoO109I	RGGNCCY	3 cut(s)	367, 400, 401
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	404
EgeI	GGCGCC	1 cut(s)	325
EheI	GGCGCC	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	1 cut(s)	273
FaiI	YATR	4 cut(s)	271, 431, 477, 488
FatI	CATG	1 cut(s)	269
FauI	CCCGC	1 cut(s)	672
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	308, 573, 576
FokI	GGATG	4 cut(s)	131, 224, 524, 687
FriOI	GRGCYC	1 cut(s)	404
FseI	GGCCGGCC	1 cut(s)	506
Fsp4HI	GCNGC	3 cut(s)	308, 573, 576
GlaI	GCGC	3 cut(s)	325, 492, 537
GluI	GCNGC	3 cut(s)	308, 573, 576
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	5 cut(s)	83, 284, 402, 502, 506
HapII	CCGG	3 cut(s)	243, 503, 567
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	3 cut(s)	326, 493, 538
Hin1I	GRCGYC	2 cut(s)	207, 324
Hin1II	CATG	1 cut(s)	273
Hin6I	GCGC	3 cut(s)	324, 491, 536
HinP1I	GCGC	3 cut(s)	324, 491, 536
HincII	GTYRAC	2 cut(s)	217, 319
HindII	GTYRAC	2 cut(s)	217, 319
HinfI	GANTC	2 cut(s)	290, 334
HpaII	CCGG	3 cut(s)	243, 503, 567
HphI	GGTGA	4 cut(s)	112, 133, 400, 622
Hpy166II	GTNNAC	3 cut(s)	67, 217, 319
Hpy188I	TCNGA	3 cut(s)	295, 696, 722
Hpy188III	TCNNGA	3 cut(s)	175, 190, 331
Hpy8I	GTNNAC	3 cut(s)	67, 217, 319
Hpy99I	CGWCG	9 cut(s)	56, 155, 209, 299, 323, 332, 353, 365, 562
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	3 cut(s)	63, 109, 213
HpyCH4V	TGCA	1 cut(s)	481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 499
HpyF3I	CTNAG	1 cut(s)	666
HpySE526I	ACGT	3 cut(s)	63, 109, 213
Hsp92I	GRCGYC	2 cut(s)	207, 324
Hsp92II	CATG	1 cut(s)	273
HspAI	GCGC	3 cut(s)	324, 491, 536
KasI	GGCGCC	1 cut(s)	323
KroI	GCCGGC	1 cut(s)	502
KroNI	GCCGGC	1 cut(s)	504
Kzo9I	GATC	3 cut(s)	33, 234, 682
LmnI	GCTCC	2 cut(s)	56, 132
Lsp1109I	GCAGC	1 cut(s)	294
MaeII	ACGT	3 cut(s)	63, 109, 213
MaeIII	GTNAC	2 cut(s)	105, 110
MalI	GATC	3 cut(s)	35, 236, 684
MboI	GATC	3 cut(s)	33, 234, 682
MboII	GAAGA	9 cut(s)	53, 160, 538, 541, 553, 592, 613, 625, 628
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	2 cut(s)	553, 723
Mly113I	GGCGCC	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	2 cut(s)	159, 318
MroNI	GCCGGC	1 cut(s)	502
MseI	TTAA	3 cut(s)	378, 420, 727
MspI	CCGG	3 cut(s)	243, 503, 567
MspR9I	CCNGG	3 cut(s)	98, 243, 568
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	434, 499
NaeI	GCCGGC	1 cut(s)	504
NarI	GGCGCC	1 cut(s)	324
NciI	CCSGG	2 cut(s)	243, 568
NdeII	GATC	3 cut(s)	33, 234, 682
NgoMIV	GCCGGC	1 cut(s)	502
NlaIII	CATG	1 cut(s)	273
NlaIV	GGNNCC	4 cut(s)	325, 369, 402, 403
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	105, 110
PcsI	WCGNNNNNNNCGW	8 cut(s)	18, 60, 159, 195, 324, 327, 357, 369
PctI	GAATGC	1 cut(s)	361
PdiI	GCCGGC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	309, 574, 577
PleI	GAGTC	1 cut(s)	284
PluTI	GGCGCC	1 cut(s)	327
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	96
PspCI	CACGTG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	4 cut(s)	325, 369, 402, 403
PspOMI	GGGCCC	1 cut(s)	400
PspPI	GGNCC	5 cut(s)	81, 367, 400, 401, 500
PspPPI	RGGWCCY	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	682
RigI	GGCCGGCC	1 cut(s)	506
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SalI	GTCGAC	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	378, 420, 727
SatI	GCNGC	3 cut(s)	308, 573, 576
Sau3AI	GATC	3 cut(s)	33, 234, 682
Sau96I	GGNCC	5 cut(s)	81, 367, 400, 401, 500
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	3 cut(s)	98, 243, 568
SduI	GDGCHC	1 cut(s)	404
SfoI	GGCGCC	1 cut(s)	325
SinI	GGWCC	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	2 cut(s)	553, 723
SsiI	CCGC	5 cut(s)	28, 518, 572, 575, 679
SspDI	GGCGCC	1 cut(s)	323
StyD4I	CCNGG	3 cut(s)	96, 241, 566
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	3 cut(s)	66, 112, 216
TaqI	TCGA	6 cut(s)	150, 189, 198, 318, 330, 557
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	2 cut(s)	553, 723
TauI	GCSGC	2 cut(s)	575, 578
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	3 cut(s)	378, 420, 727
Tru9I	TTAA	3 cut(s)	378, 420, 727
TscAI	CASTG	2 cut(s)	83, 655
TseFI	GTSAC	2 cut(s)	105, 110
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	2 cut(s)	105, 110
TspDTI	ATGAA	1 cut(s)	160
TspGWI	ACGGA	2 cut(s)	69, 312
TspRI	CASTG	2 cut(s)	83, 655
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	1 cut(s)	723
XmiI	GTMKAC	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.