Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0009966

Physical Location & Seq

Genomic Coordinates Forward (+)

24927498 .. 24929462

Gene Structure 1965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG257700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCGAAGTACGGCGAGGGCGACAAGCGGTGGATCGTGGAAGACAGACCCGACGGAGCGAACGTCCACAACTGGCACTGGGCGGAGACCGATTGCCTGGGCTGGTCACGTGACCTCCTCACCAAGCTCCTCTCCAACCTCACCATCCTCGACGGCGAAGGCGACCTCTTCGTCAAGACCAACAAGGTCGAGAAGGTCGAAGGCGACGCCTACGTCAACATTCGCAAGGGCAAGATCATCCCCGGCTACGAAATCAGCCTCAGTCTCTCATGGGAGGGCGAGGCCAGAGACTCCGACGGCAAATCGCTGCTCAAGGTCGACGGCGCCGTCGAGATTCCCTACATCGCCGACGAGAACGCCGACGAGGACCCCGAGGTTAAGGTTTCGGTGAAGGACGAGGGCCCCATTGGGAGGAGGATTAAGGAGGCTATGGTGGCGAAGGGGAAGCCTGTGATTTTGGAGAAGGTTAGGGTTTATGTGCAGAGTATGGCGCAGGGTGGGCCGGCCAAGGATGAGGCCGAGGCGAAGAAGATTGCGCCGAAGGCTAATAATAATTCGACGAGTTCCGGGGCGGCGGTGAAGAAGGAGGTGGTGGTGGTGGAGAAGAAGGAGGTGAAGAAGAAGGAGAGCAAGAAAGGGTTTAAGACGATTAGTATGACTGAGAAGTTTAGCTGCAGGGCGAGTAATTTGTATGAGATTTTGATGGATGATAATAGATGGAAGGGGTTTACTCAGAGCAATGCTAAGATAAGTAAAGAGGTTGGAGGAGAGTTCAGTATTTTCGATGGGTCGGTGACGGGTAAGAATTTGGAGCTGCAGAATGGCAAGTTGATTGTGCAGAATTGGAGATTTGGGAGTTGGCCTGATGGGATTGAGTCGAAGGTAGAGATATATTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008047 GO:0008150 GO:0030234 GO:0031072 GO:0032781 GO:0043085 GO:0043462 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0051879 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AHSA1 Aha1_N

Protein Analysis

300

Amino Acids

33.29

Weight (kDa)

6.29

Isoelectric Point (pI)

25.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aha1_N	PF09229	29 - 165	6.6e-34	Activator of Hsp90 ATPase, N-terminal
AHSA1	PF08327	227 - 297	1.1e-06	Activator of Hsp90 ATPase homolog 1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12050 AT3G12050
fragaria_vesca	FvH4_6g21990
malus_domestica	MD12G1055300.v1.1 MD14G1054700.v1.1
prunus_persica	Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1
pyrus_communis	pycom12g04830 pycom14g04520
rosa_chinensis	RchiOBHm_Chr3g0479291
rosa_laevigata	RLG00000023586
rosa_multiflora	Rmu_sc0015378.1_g000002 Rmu_sc0026945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402430
rosa_rugosa	Rorug03G0174200
rosa_samantha	Rh3AG225200 Rh3BG257700 Rh3CG253400 Rh3DG249600
rosa_wichuraiana	Rw3G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	170, 212, 326
AccB1I	GGYRCC	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	318
AciI	CCGC	4 cut(s)	28, 83, 572, 575
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	805
AcvI	CACGTG	1 cut(s)	110
AcyI	GRCGYC	2 cut(s)	207, 324
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	411
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	3 cut(s)	127, 672, 814
AluI	AGCT	3 cut(s)	127, 672, 814
Alw26I	GTCTC	3 cut(s)	80, 269, 282
AlwI	GGATC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	6 cut(s)	282, 400, 500, 504, 516, 860
ApaI	GGGCCC	1 cut(s)	404
ApeKI	GCWGC	3 cut(s)	307, 672, 814
ApoI	RAATTY	1 cut(s)	805
AspLEI	GCGC	3 cut(s)	326, 493, 538
AspS9I	GGNCC	4 cut(s)	367, 400, 401, 500
AsuC2I	CCSGG	2 cut(s)	243, 568
AsuHPI	GGTGA	6 cut(s)	112, 133, 400, 589, 625, 805
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	367
BaeGI	GKGCMC	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	404
BbrPI	CACGTG	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	3 cut(s)	294, 659, 801
BccI	CCATC	5 cut(s)	152, 697, 711, 779, 860
BceAI	ACGGC	5 cut(s)	28, 169, 311, 313, 337
BciT130I	CCWGG	1 cut(s)	98
BcnI	CCSGG	2 cut(s)	243, 568
BcoDI	GTCTC	3 cut(s)	80, 269, 282
BfmI	CTRYAG	2 cut(s)	673, 815
BfoI	RGCGCY	1 cut(s)	327
BisI	GCNGC	4 cut(s)	308, 573, 673, 815
BlsI	GCNGC	4 cut(s)	309, 574, 674, 816
Bme1390I	CCNGG	3 cut(s)	98, 243, 568
Bme18I	GGWCC	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	4 cut(s)	367, 400, 401, 500
BmiI	GGNNCC	4 cut(s)	325, 369, 402, 403
BmrFI	CCNGG	3 cut(s)	98, 243, 568
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	2 cut(s)	243, 568
BsaAI	YACGTR	1 cut(s)	110
BsaHI	GRCGYC	2 cut(s)	207, 324
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	6 cut(s)	97, 241, 372, 507, 519, 567
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	2 cut(s)	77, 83
Bse3DI	GCAATG	1 cut(s)	745
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	6 cut(s)	97, 241, 372, 507, 519, 567
BseGI	GGATG	4 cut(s)	144, 237, 517, 712
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMI	GCAATG	1 cut(s)	745
BseMII	CTCAG	3 cut(s)	274, 651, 746
BseNI	ACTGG	2 cut(s)	77, 83
BseRI	GAGGAG	4 cut(s)	107, 119, 427, 780
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	3 cut(s)	294, 659, 801
BsgI	GTGCAG	2 cut(s)	500, 857
BshFI	GGCC	6 cut(s)	284, 402, 502, 506, 518, 862
BshNI	GGYRCC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	243, 503, 567
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmAI	GTCTC	3 cut(s)	80, 269, 282
BsnI	GGCC	6 cut(s)	284, 402, 502, 506, 518, 862
Bso31I	GGTCTC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	371
Bsp120I	GGGCCC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	2 cut(s)	33, 234
BspACI	CCGC	4 cut(s)	28, 83, 572, 575
BspANI	GGCC	6 cut(s)	284, 402, 502, 506, 518, 862
BspCNI	CTCAG	3 cut(s)	273, 652, 745
BspLI	GGNNCC	4 cut(s)	325, 369, 402, 403
BspMAI	CTGCAG	2 cut(s)	677, 819
BspPI	GGATC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	745
BsrFI	RCCGGY	1 cut(s)	502
BsrI	ACTGG	2 cut(s)	77, 83
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	6 cut(s)	97, 241, 372, 507, 519, 567
BssMI	GATC	2 cut(s)	33, 234
BssNI	GRCGYC	2 cut(s)	207, 324
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	2 cut(s)	207, 324
BstBAI	YACGTR	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	4 cut(s)	260, 660, 732, 744
BstF5I	GGATG	4 cut(s)	144, 237, 517, 712
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	3 cut(s)	326, 493, 538
BstKTI	GATC	2 cut(s)	36, 237
BstMAI	GTCTC	3 cut(s)	80, 269, 282
BstMBI	GATC	2 cut(s)	33, 234
BstMWI	GCNNNNNNNGC	3 cut(s)	434, 499, 542
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	96, 241, 566
BstSFI	CTRYAG	2 cut(s)	673, 815
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	3 cut(s)	294, 659, 801
BstV2I	GAAGAC	1 cut(s)	48
BsuRI	GGCC	6 cut(s)	284, 402, 502, 506, 518, 862
BtgZI	GCGATG	1 cut(s)	328
BtsCI	GGATG	4 cut(s)	144, 237, 517, 712
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	504
CfoI	GCGC	3 cut(s)	326, 493, 538
Cfr10I	RCCGGY	1 cut(s)	502
Cfr13I	GGNCC	4 cut(s)	367, 400, 401, 500
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	1 cut(s)	270
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	4 cut(s)	260, 660, 732, 744
DinI	GGCGCC	1 cut(s)	325
DpnI	GATC	2 cut(s)	35, 236
DpnII	GATC	2 cut(s)	33, 234
DrdI	GACNNNNNNGTC	3 cut(s)	170, 212, 326
DseDI	GACNNNNNNGTC	3 cut(s)	170, 212, 326
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	404
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	367
Eco72I	CACGTG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	371
EcoO109I	RGGNCCY	3 cut(s)	367, 400, 401
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	404
EgeI	GGCGCC	1 cut(s)	325
EheI	GGCGCC	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	1 cut(s)	273
FaiI	YATR	7 cut(s)	271, 431, 477, 488, 656, 693, 892
FatI	CATG	1 cut(s)	269
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	4 cut(s)	308, 573, 673, 815
FokI	GGATG	4 cut(s)	131, 224, 524, 719
FriOI	GRGCYC	1 cut(s)	404
FseI	GGCCGGCC	1 cut(s)	506
Fsp4HI	GCNGC	4 cut(s)	308, 573, 673, 815
GlaI	GCGC	3 cut(s)	325, 492, 537
GluI	GCNGC	4 cut(s)	308, 573, 673, 815
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	6 cut(s)	284, 402, 502, 506, 518, 862
HapII	CCGG	3 cut(s)	243, 503, 567
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	3 cut(s)	326, 493, 538
Hin1I	GRCGYC	2 cut(s)	207, 324
Hin1II	CATG	1 cut(s)	273
Hin6I	GCGC	3 cut(s)	324, 491, 536
HinP1I	GCGC	3 cut(s)	324, 491, 536
HincII	GTYRAC	2 cut(s)	217, 319
HindII	GTYRAC	2 cut(s)	217, 319
HinfI	GANTC	3 cut(s)	290, 334, 875
HpaII	CCGG	3 cut(s)	243, 503, 567
HphI	GGTGA	6 cut(s)	112, 133, 400, 589, 625, 805
Hpy166II	GTNNAC	4 cut(s)	67, 217, 319, 729
Hpy188I	TCNGA	2 cut(s)	295, 735
Hpy188III	TCNNGA	4 cut(s)	175, 190, 331, 900
Hpy8I	GTNNAC	4 cut(s)	67, 217, 319, 729
Hpy99I	CGWCG	9 cut(s)	56, 155, 209, 299, 323, 332, 353, 365, 562
HpyCH4IV	ACGT	3 cut(s)	63, 109, 213
HpyCH4V	TGCA	4 cut(s)	481, 675, 817, 838
HpyF10VI	GCNNNNNNNGC	3 cut(s)	434, 499, 542
HpyF3I	CTNAG	4 cut(s)	260, 660, 732, 744
HpySE526I	ACGT	3 cut(s)	63, 109, 213
Hsp92I	GRCGYC	2 cut(s)	207, 324
Hsp92II	CATG	1 cut(s)	273
HspAI	GCGC	3 cut(s)	324, 491, 536
KasI	GGCGCC	1 cut(s)	323
KroI	GCCGGC	1 cut(s)	502
KroNI	GCCGGC	1 cut(s)	504
Kzo9I	GATC	2 cut(s)	33, 234
LmnI	GCTCC	3 cut(s)	56, 132, 811
Lsp1109I	GCAGC	3 cut(s)	294, 659, 801
MaeII	ACGT	3 cut(s)	63, 109, 213
MaeIII	GTNAC	3 cut(s)	105, 110, 793
MalI	GATC	2 cut(s)	35, 236
MboI	GATC	2 cut(s)	33, 234
MboII	GAAGA	8 cut(s)	53, 160, 538, 541, 592, 616, 628, 631
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	4 cut(s)	553, 685, 805, 841
Mly113I	GGCGCC	1 cut(s)	324
MlyI	GAGTC	2 cut(s)	284, 884
MmeI	TCCRAC	3 cut(s)	159, 318, 742
MroNI	GCCGGC	1 cut(s)	502
MseI	TTAA	3 cut(s)	378, 420, 642
MspI	CCGG	3 cut(s)	243, 503, 567
MspR9I	CCNGG	3 cut(s)	98, 243, 568
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	434, 499, 542
NaeI	GCCGGC	1 cut(s)	504
NarI	GGCGCC	1 cut(s)	324
NciI	CCSGG	2 cut(s)	243, 568
NdeII	GATC	2 cut(s)	33, 234
NgoMIV	GCCGGC	1 cut(s)	502
NlaIII	CATG	1 cut(s)	273
NlaIV	GGNNCC	4 cut(s)	325, 369, 402, 403
NmeAIII	GCCGAG	1 cut(s)	544
NmuCI	GTSAC	3 cut(s)	105, 110, 793
PcsI	WCGNNNNNNNCGW	8 cut(s)	18, 60, 159, 195, 324, 327, 357, 369
PdiI	GCCGGC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	4 cut(s)	309, 574, 674, 816
PleI	GAGTC	2 cut(s)	284, 883
PluTI	GGCGCC	1 cut(s)	327
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
PpsI	GAGTC	2 cut(s)	284, 883
Ppu21I	YACGTR	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	96
PspCI	CACGTG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	4 cut(s)	325, 369, 402, 403
PspOMI	GGGCCC	1 cut(s)	400
PspPI	GGNCC	4 cut(s)	367, 400, 401, 500
PspPPI	RGGWCCY	1 cut(s)	367
PstI	CTGCAG	2 cut(s)	677, 819
RigI	GGCCGGCC	1 cut(s)	506
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SalI	GTCGAC	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	378, 420, 642
SatI	GCNGC	4 cut(s)	308, 573, 673, 815
Sau3AI	GATC	2 cut(s)	33, 234
Sau96I	GGNCC	4 cut(s)	367, 400, 401, 500
SchI	GAGTC	2 cut(s)	284, 884
ScrFI	CCNGG	3 cut(s)	98, 243, 568
SduI	GDGCHC	1 cut(s)	404
SfcI	CTRYAG	2 cut(s)	673, 815
SfoI	GGCGCC	1 cut(s)	325
SinI	GGWCC	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	4 cut(s)	553, 685, 805, 841
SsiI	CCGC	4 cut(s)	28, 83, 572, 575
SspDI	GGCGCC	1 cut(s)	323
StyD4I	CCNGG	3 cut(s)	96, 241, 566
StyI	CCWWGG	1 cut(s)	507
TaiI	ACGT	3 cut(s)	66, 112, 216
TaqI	TCGA	8 cut(s)	150, 189, 198, 318, 330, 557, 783, 878
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	4 cut(s)	553, 685, 805, 841
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	3 cut(s)	378, 420, 642
Tru9I	TTAA	3 cut(s)	378, 420, 642
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	3 cut(s)	105, 110, 793
TseI	GCWGC	3 cut(s)	307, 672, 814
Tsp45I	GTSAC	3 cut(s)	105, 110, 793
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	1 cut(s)	805
XmiI	GTMKAC	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.