Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009966

Physical Location & Seq

Genomic Coordinates Forward (+)

4092596 .. 4094009

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCGAAGTACGGCGAGGGCGACAAGCGGTGGATCGTGGAGGACAGGCCCGACGGAGCCAACGTCCACAACTGGCACTGGGCCGAGACCGACTGTCTCGGCTGGTCACGTGACCTCCTCACCAAGCTCCTCAACAACCTCACCGTCCTCGACGGCGAAGGCAACCTATACCTCAGGACCAAGACCGTCGACAAGGTGGACGGCGAGGCCTACGTCAACGTCCGGAAGGGGAAGATCATCCCGGGATACGAAATCAGCCTCAGTCTGTCGTGGGAGGGCGAGGCGAAGGACGGCGACGGGAAGTCGCTGCTGAAGGTCGACGGAGTTGTGGAGATTCCATATATTTCGGACGAGAACGCCGACGAGGACCCCGAGGTTAAGGTTTCGGTGAAGGATGAGGGGCCGATTGGGAGGAGGATTAAGGAGGCGATGGTGGCGAAAGGGAAGCCATTGATTTTGGAGAAGGTTAGGTTTTATGTGGAGAGTATGGCGAAGGGCGGGCCGGCGAAGGAGGAAGTTGAGGCTAAGAAGATTGCGCCGAAGAGTAATTCGACGGCAGTGGGTGCTGCTGCGGCGACGGCGAAAAAGGAGGTGGTTGTGGAGAAGAAGGAGGTGAAGAAGAAGGAGAACAAGAAAGGGTTTAAGACGATTAGTTTGACTGAGAAGTTTAGTTGCAGGGCGAAAGATATGTTTGAGATTTTGATGGATGAGAACAGATGGAAGGGTTTTACGCAGAGCAATGCGAAGATAAGCAAGGAGGTCGGAGGGCCGATTAGTATTTTTGATGGGTCGGTGACCGGTACGAATTTGGAGTTGCAGAGTGGGAGTTTGATTGTGCAGAAATGGAGATTTGGCAGCTGGCCGGACGGGATTGATTCGACGGTGAGGCTTATACTTGAAGAACCTGAACCTGGGCTCACTGTTGTTAAGCTAACACATACCGACATTCCTGTGGAAGACAGATGGGAACGCGACCGTGGTGGAGAATACGGAGAGAGGATGGCGGGATCTTATCTTCCAGCGGATAAGGGCAGTTTTTGGTTTTGGCATTTAAGATATTCAAGTTGGGTTTCTCTTGCAATTGTGGAATTTGTTGATTTTGGAAGCATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008047 GO:0008150 GO:0030234 GO:0031072 GO:0032781 GO:0043085 GO:0043462 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0051879 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AHSA1 Aha1_N

Protein Analysis

372

Amino Acids

41.42

Weight (kDa)

5.71

Isoelectric Point (pI)

26.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12050 AT3G12050
fragaria_vesca	FvH4_6g21990
malus_domestica	MD12G1055300.v1.1 MD14G1054700.v1.1
prunus_persica	Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1
pyrus_communis	pycom12g04830 pycom14g04520
rosa_chinensis	RchiOBHm_Chr3g0479291
rosa_laevigata	RLG00000023586
rosa_multiflora	Rmu_sc0015378.1_g000002 Rmu_sc0026945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402430
rosa_rugosa	Rorug03G0174200
rosa_samantha	Rh3AG225200 Rh3BG257700 Rh3CG253400 Rh3DG249600
rosa_wichuraiana	Rw3G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	189, 318
AccII	CGCG	1 cut(s)	972
AccIII	TCCGGA	1 cut(s)	222
AciI	CCGC	5 cut(s)	28, 498, 572, 1004, 1022
AclWI	GGATC	2 cut(s)	41, 1015
AcoI	YGGCCR	1 cut(s)	860
AcsI	RAATTY	2 cut(s)	805, 1088
AcuI	CTGAAG	1 cut(s)	332
AcvI	CACGTG	1 cut(s)	110
AfaI	GTAC	2 cut(s)	11, 802
AfiI	CCNNNNNNNGG	1 cut(s)	911
AgeI	ACCGGT	1 cut(s)	797
AgsI	TTSAA	2 cut(s)	899, 1062
AhdI	GACNNNNNGTC	2 cut(s)	93, 301
AjnI	CCWGG	1 cut(s)	910
AluBI	AGCT	3 cut(s)	127, 858, 931
AluI	AGCT	3 cut(s)	127, 858, 931
Alw26I	GTCTC	2 cut(s)	80, 101
AlwI	GGATC	2 cut(s)	41, 1015
Ama87I	CYCGRG	2 cut(s)	241, 371
Aor13HI	TCCGGA	1 cut(s)	222
AoxI	GGCC	7 cut(s)	47, 81, 207, 401, 500, 767, 860
ApeKI	GCWGC	4 cut(s)	307, 566, 569, 855
ApoI	RAATTY	2 cut(s)	805, 1088
ArsI	GACNNNNNNTTYG	2 cut(s)	637, 669
AsiGI	ACCGGT	1 cut(s)	797
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	7 cut(s)	48, 81, 177, 367, 401, 500, 767
AsuC2I	CCSGG	2 cut(s)	242, 243
AsuHPI	GGTGA	6 cut(s)	112, 133, 400, 625, 805, 895
AvaI	CYCGRG	2 cut(s)	241, 371
AvaII	GGWCC	2 cut(s)	177, 367
AxyI	CCTNAGG	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	918
BbrPI	CACGTG	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	963
BbvI	GCAGC	4 cut(s)	294, 553, 556, 867
BccI	CCATC	6 cut(s)	424, 697, 711, 779, 957, 994
BceAI	ACGGC	6 cut(s)	28, 169, 217, 307, 570, 594
BcgI	CGANNNNNNTGC	2 cut(s)	742, 776
BciT130I	CCWGG	1 cut(s)	912
BciVI	GTATCC	1 cut(s)	239
BcnI	CCSGG	2 cut(s)	242, 243
BcoDI	GTCTC	2 cut(s)	80, 101
BfuI	GTATCC	1 cut(s)	239
BisI	GCNGC	5 cut(s)	308, 567, 570, 573, 856
BlsI	GCNGC	5 cut(s)	309, 568, 571, 574, 857
Bme1390I	CCNGG	3 cut(s)	242, 243, 912
Bme18I	GGWCC	2 cut(s)	177, 367
BmeRI	GACNNNNNGTC	2 cut(s)	93, 301
BmeT110I	CYCGRG	2 cut(s)	241, 371
BmgT120I	GGNCC	7 cut(s)	48, 81, 177, 367, 401, 500, 767
BmiI	GGNNCC	3 cut(s)	58, 369, 402
BmrFI	CCNGG	3 cut(s)	242, 243, 912
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	963
BpuMI	CCSGG	2 cut(s)	242, 243
BsaAI	YACGTR	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	4 cut(s)	241, 372, 911, 976
BsaWI	WCCGGW	2 cut(s)	222, 797
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	911
Bse118I	RCCGGY	2 cut(s)	502, 797
Bse1I	ACTGG	2 cut(s)	77, 83
Bse21I	CCTNAGG	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	745
BseAI	TCCGGA	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	912
BseDI	CCNNGG	4 cut(s)	241, 372, 911, 976
BseGI	GGATG	4 cut(s)	237, 400, 712, 1005
BseLI	CCNNNNNNNGG	1 cut(s)	911
BseMI	GCAATG	1 cut(s)	745
BseMII	CTCAG	3 cut(s)	187, 274, 651
BseNI	ACTGG	2 cut(s)	77, 83
BseRI	GAGGAG	3 cut(s)	107, 119, 427
BseXI	GCAGC	4 cut(s)	294, 553, 556, 867
BsgI	GTGCAG	1 cut(s)	857
Bsh1236I	CGCG	1 cut(s)	972
Bsh1285I	CGRYCG	1 cut(s)	976
BshFI	GGCC	7 cut(s)	49, 83, 209, 403, 502, 769, 862
BshTI	ACCGGT	1 cut(s)	797
BsiEI	CGRYCG	1 cut(s)	976
BsiHKCI	CYCGRG	2 cut(s)	241, 371
BsiSI	CCGG	5 cut(s)	223, 242, 503, 798, 863
BslI	CCNNNNNNNGG	1 cut(s)	911
BsmAI	GTCTC	2 cut(s)	80, 101
BsnI	GGCC	7 cut(s)	49, 83, 209, 403, 502, 769, 862
Bso31I	GGTCTC	1 cut(s)	80
BsoBI	CYCGRG	2 cut(s)	241, 371
Bsp1286I	GDGCHC	1 cut(s)	918
Bsp13I	TCCGGA	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	33, 234, 1007
BspACI	CCGC	5 cut(s)	28, 498, 572, 1004, 1022
BspANI	GGCC	7 cut(s)	49, 83, 209, 403, 502, 769, 862
BspCNI	CTCAG	3 cut(s)	186, 273, 652
BspEI	TCCGGA	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	972
BspLI	GGNNCC	3 cut(s)	58, 369, 402
BspPI	GGATC	2 cut(s)	41, 1015
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	745
BsrFI	RCCGGY	2 cut(s)	502, 797
BsrI	ACTGG	2 cut(s)	77, 83
BssAI	RCCGGY	2 cut(s)	502, 797
BssECI	CCNNGG	4 cut(s)	241, 372, 911, 976
BssMI	GATC	3 cut(s)	33, 234, 1007
Bst2UI	CCWGG	1 cut(s)	912
Bst4CI	ACNGT	6 cut(s)	95, 145, 187, 883, 922, 977
Bst6I	CTCTTC	1 cut(s)	536
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstBAI	YACGTR	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	500, 504, 860
BstDEI	CTNAG	4 cut(s)	173, 260, 525, 660
BstDSI	CCRYGG	1 cut(s)	976
BstEII	GGTNACC	1 cut(s)	793
BstF5I	GGATG	4 cut(s)	237, 400, 712, 1005
BstFNI	CGCG	1 cut(s)	972
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	3 cut(s)	36, 237, 1010
BstMAI	GTCTC	2 cut(s)	80, 101
BstMBI	GATC	3 cut(s)	33, 234, 1007
BstMCI	CGRYCG	1 cut(s)	976
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 563, 572, 578
BstNI	CCWGG	1 cut(s)	912
BstPI	GGTNACC	1 cut(s)	793
BstSCI	CCNGG	3 cut(s)	240, 241, 910
BstUI	CGCG	1 cut(s)	972
BstV1I	GCAGC	4 cut(s)	294, 553, 556, 867
BstV2I	GAAGAC	1 cut(s)	963
BstX2I	RGATCY	1 cut(s)	1007
BstYI	RGATCY	1 cut(s)	1007
Bsu36I	CCTNAGG	1 cut(s)	173
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	7 cut(s)	49, 83, 209, 403, 502, 769, 862
BtgI	CCRYGG	1 cut(s)	976
BtgZI	GCGATG	1 cut(s)	443
BtsCI	GGATG	4 cut(s)	237, 400, 712, 1005
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	3 cut(s)	76, 564, 918
Cac8I	GCNNGC	3 cut(s)	500, 504, 860
CfoI	GCGC	1 cut(s)	538
Cfr10I	RCCGGY	2 cut(s)	502, 797
Cfr13I	GGNCC	7 cut(s)	48, 81, 177, 367, 401, 500, 767
Cfr9I	CCCGGG	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	10, 801
CspAI	ACCGGT	1 cut(s)	797
CviAII	CATG	1 cut(s)	1108
CviQI	GTAC	2 cut(s)	10, 801
DdeI	CTNAG	4 cut(s)	173, 260, 525, 660
DpnI	GATC	3 cut(s)	35, 236, 1009
DpnII	GATC	3 cut(s)	33, 234, 1007
DriI	GACNNNNNGTC	2 cut(s)	93, 301
EaeI	YGGCCR	1 cut(s)	860
Eam1104I	CTCTTC	1 cut(s)	536
Eam1105I	GACNNNNNGTC	2 cut(s)	93, 301
EarI	CTCTTC	1 cut(s)	536
Eco147I	AGGCCT	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	918
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	2 cut(s)	177, 367
Eco57I	CTGAAG	1 cut(s)	332
Eco72I	CACGTG	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	173
Eco88I	CYCGRG	2 cut(s)	241, 371
Eco91I	GGTNACC	1 cut(s)	793
EcoO109I	RGGNCCY	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	793
EcoRII	CCWGG	1 cut(s)	910
EcoT38I	GRGCYC	1 cut(s)	918
FaeI	CATG	1 cut(s)	1111
FaiI	YATR	9 cut(s)	169, 340, 342, 477, 488, 689, 893, 939, 1109
FatI	CATG	1 cut(s)	1107
FauI	CCCGC	2 cut(s)	491, 997
FblI	GTMKAC	2 cut(s)	189, 318
Fnu4HI	GCNGC	5 cut(s)	308, 567, 570, 573, 856
FokI	GGATG	4 cut(s)	224, 407, 719, 1012
FriOI	GRGCYC	1 cut(s)	918
Fsp4HI	GCNGC	5 cut(s)	308, 567, 570, 573, 856
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	5 cut(s)	308, 567, 570, 573, 856
HaeIII	GGCC	7 cut(s)	49, 83, 209, 403, 502, 769, 862
HapII	CCGG	5 cut(s)	223, 242, 503, 798, 863
HhaI	GCGC	1 cut(s)	538
Hin1II	CATG	1 cut(s)	1111
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HincII	GTYRAC	3 cut(s)	190, 217, 319
HindII	GTYRAC	3 cut(s)	190, 217, 319
HinfI	GANTC	2 cut(s)	334, 875
HpaII	CCGG	5 cut(s)	223, 242, 503, 798, 863
HphI	GGTGA	6 cut(s)	112, 133, 400, 625, 805, 895
Hpy166II	GTNNAC	5 cut(s)	67, 190, 199, 217, 319
Hpy188I	TCNGA	2 cut(s)	349, 764
Hpy188III	TCNNGA	2 cut(s)	175, 223
Hpy8I	GTNNAC	5 cut(s)	67, 190, 199, 217, 319
Hpy99I	CGWCG	9 cut(s)	56, 155, 191, 299, 323, 365, 556, 580, 883
HpyCH4III	ACNGT	6 cut(s)	95, 145, 187, 883, 922, 977
HpyCH4IV	ACGT	4 cut(s)	63, 109, 213, 219
HpyCH4V	TGCA	4 cut(s)	675, 817, 838, 1079
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 563, 572, 578
HpyF3I	CTNAG	4 cut(s)	173, 260, 525, 660
HpySE526I	ACGT	4 cut(s)	63, 109, 213, 219
Hsp92II	CATG	1 cut(s)	1111
HspAI	GCGC	1 cut(s)	536
Kpn2I	TCCGGA	1 cut(s)	222
KroI	GCCGGC	1 cut(s)	502
KroNI	GCCGGC	1 cut(s)	504
Kzo9I	GATC	3 cut(s)	33, 234, 1007
LmnI	GCTCC	2 cut(s)	56, 132
Lsp1109I	GCAGC	4 cut(s)	294, 553, 556, 867
MaeII	ACGT	4 cut(s)	63, 109, 213, 219
MaeIII	GTNAC	3 cut(s)	105, 110, 793
MalI	GATC	3 cut(s)	35, 236, 1009
MboI	GATC	3 cut(s)	33, 234, 1007
MfeI	CAATTG	1 cut(s)	1080
MflI	RGATCY	1 cut(s)	1007
MhlI	GDGCHC	1 cut(s)	918
MluCI	AATT	5 cut(s)	547, 805, 1080, 1088, 1111
MmeI	TCCRAC	1 cut(s)	742
MroI	TCCGGA	1 cut(s)	222
MroNI	GCCGGC	1 cut(s)	502
MseI	TTAA	6 cut(s)	378, 420, 642, 927, 1052, 1114
MslI	CAYNNNNRTG	1 cut(s)	950
MspA1I	CMGCKG	2 cut(s)	858, 1022
MspI	CCGG	5 cut(s)	223, 242, 503, 798, 863
MspR9I	CCNGG	3 cut(s)	242, 243, 912
MunI	CAATTG	1 cut(s)	1080
MvaI	CCWGG	1 cut(s)	912
MvnI	CGCG	1 cut(s)	972
MwoI	GCNNNNNNNGC	4 cut(s)	434, 563, 572, 578
NaeI	GCCGGC	1 cut(s)	504
NciI	CCSGG	2 cut(s)	242, 243
NdeII	GATC	3 cut(s)	33, 234, 1007
NgoMIV	GCCGGC	1 cut(s)	502
NlaIII	CATG	1 cut(s)	1111
NlaIV	GGNNCC	3 cut(s)	58, 369, 402
NmeAIII	GCCGAG	2 cut(s)	78, 109
NmuCI	GTSAC	3 cut(s)	105, 110, 793
PceI	AGGCCT	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	4 cut(s)	18, 60, 357, 369
PdiI	GCCGGC	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	334, 875
PinAI	ACCGGT	1 cut(s)	797
PkrI	GCNGC	5 cut(s)	309, 568, 571, 574, 857
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
Ppu21I	YACGTR	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	910
PspCI	CACGTG	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	793
PspGI	CCWGG	1 cut(s)	910
PspN4I	GGNNCC	3 cut(s)	58, 369, 402
PspPI	GGNCC	7 cut(s)	48, 81, 177, 367, 401, 500, 767
PspPPI	RGGWCCY	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	1007
PvuII	CAGCTG	1 cut(s)	858
RsaI	GTAC	2 cut(s)	11, 802
RsaNI	GTAC	2 cut(s)	10, 801
RseI	CAYNNNNRTG	1 cut(s)	950
SalI	GTCGAC	2 cut(s)	188, 317
SaqAI	TTAA	6 cut(s)	378, 420, 642, 927, 1052, 1114
SatI	GCNGC	5 cut(s)	308, 567, 570, 573, 856
Sau3AI	GATC	3 cut(s)	33, 234, 1007
Sau96I	GGNCC	7 cut(s)	48, 81, 177, 367, 401, 500, 767
ScrFI	CCNGG	3 cut(s)	242, 243, 912
SduI	GDGCHC	1 cut(s)	918
SinI	GGWCC	2 cut(s)	177, 367
SmaI	CCCGGG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	950
Sse9I	AATT	5 cut(s)	547, 805, 1080, 1088, 1111
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	5 cut(s)	28, 498, 572, 1004, 1022
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	3 cut(s)	240, 241, 910
TaaI	ACNGT	6 cut(s)	95, 145, 187, 883, 922, 977
TaiI	ACGT	4 cut(s)	66, 112, 216, 222
TaqI	TCGA	5 cut(s)	150, 189, 318, 551, 878
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	5 cut(s)	547, 805, 1080, 1088, 1111
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	2 cut(s)	334, 875
Tru1I	TTAA	6 cut(s)	378, 420, 642, 927, 1052, 1114
Tru9I	TTAA	6 cut(s)	378, 420, 642, 927, 1052, 1114
TscAI	CASTG	3 cut(s)	83, 564, 925
TseFI	GTSAC	3 cut(s)	105, 110, 793
TseI	GCWGC	4 cut(s)	307, 566, 569, 855
Tsp45I	GTSAC	3 cut(s)	105, 110, 793
TspGWI	ACGGA	3 cut(s)	69, 336, 1005
TspMI	CCCGGG	1 cut(s)	241
TspRI	CASTG	3 cut(s)	83, 564, 925
VpaK11BI	GGWCC	2 cut(s)	177, 367
XapI	RAATTY	2 cut(s)	805, 1088
XmaI	CCCGGG	1 cut(s)	241
XmiI	GTMKAC	2 cut(s)	189, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.