Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009966

Physical Location & Seq

Genomic Coordinates Forward (+)

3839101 .. 3841606

Gene Structure 2506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCAAAGTTCGGTGAAGGTGACAAGAGATGGATCGTAGAAGACAGACCTGACGGCACCAACGTCCATAACTGGCACTGGTCCGAAACCAATTGCCTTGAATGGTCTCGCAACTTCTTCACCAAACAATTCTCCGGCGTTGATATCCTCTCCGGCGAAGGTAATCTTTTCATCAAGGTCAGTAAGATCGAGAAAGTCGAAGGCGAGGCTTATGTGAATGTGAGGAAGGGGAAGATTATCCCTGGCTACGAGCTTAACGTCTCTTTATCTTGGGAAGGTGAGGCTAAAGATTCCGATGGGAAGACGCTTTTGAAAGCTGATGGATTGGTCGATATGCCTTATATCTCCGATGAGAATGCTGATGAAGATCCGGAGATTAGGTTTTCGGTGAAGGATGAGGGACCGATTGGGAGGACTTTGAAGGAAGCGATGGTGAAGAAGGGGAAGGAGATTATTCTGGAGAAGGTTAGGGTTTATGTGGAGGCTATGGCGAGAGGAGGCCCGTGTAGGGATGAATTGGAATCGAAGAAGGTTGCGCCGAAATCGGTAGCGGCTGGATCAGCTACGGTGGCGGTGGAGAAGTCTGGTGCTGCCCCGGTGGTGTCTGCTGCTGCGGTGGAGAGTAAGGTAGTTAAGGAGAAGAAGAAGGCGAAGACTAAGGAAGGGTTTAAGACAATTACTATGACCGAGAAGTTTAATTGCAGAGCTAGGGATTTGTATGAGATTTTAATGGATGAGAATCGTTGGAAAGGTTTTACGCAGAGTAATGCTAAGATTAGTAAAGATGTGAATGGTCCGATTAGTGTCTTTGATGGGTCTGTTACTGGAATGAATCTTGAGCTTGAAGAAGGCAAATTGATTGTTCAGAAGTGGAGATTTGGGAGCTGGCCTGATGGTCTTGATTCAACGGTGAAGATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTTACTCACACTGACGTTCCTGAAGAGGACAGATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGAGATCTTATATTCCATAGGATCCGTGCAGTTTTCGGATTTGGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008047 GO:0008150 GO:0030234 GO:0031072 GO:0032781 GO:0043085 GO:0043462 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0051879 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AHSA1 Aha1_N

Protein Analysis

360

Amino Acids

40.18

Weight (kDa)

5.7

Isoelectric Point (pI)

22.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aha1_N	PF09229	29 - 164	4.9e-31	Activator of Hsp90 ATPase, N-terminal
AHSA1	PF08327	235 - 356	1.5e-13	Activator of Hsp90 ATPase homolog 1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12050 AT3G12050
fragaria_vesca	FvH4_6g21990
malus_domestica	MD12G1055300.v1.1 MD14G1054700.v1.1
prunus_persica	Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1
pyrus_communis	pycom12g04830 pycom14g04520
rosa_chinensis	RchiOBHm_Chr3g0479291
rosa_laevigata	RLG00000023586
rosa_multiflora	Rmu_sc0015378.1_g000002 Rmu_sc0026945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402430
rosa_rugosa	Rorug03G0174200
rosa_samantha	Rh3AG225200 Rh3BG257700 Rh3CG253400 Rh3DG249600
rosa_wichuraiana	Rw3G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	370
AciI	CCGC	3 cut(s)	551, 572, 614
AclWI	GGATC	5 cut(s)	41, 362, 565, 1048, 1061
AcuI	CTGAAG	1 cut(s)	999
AfiI	CCNNNNNNNGG	2 cut(s)	508, 938
AgsI	TTSAA	5 cut(s)	101, 313, 421, 845, 906
AjnI	CCWGG	2 cut(s)	241, 937
AluBI	AGCT	6 cut(s)	253, 317, 563, 707, 841, 885
AluI	AGCT	6 cut(s)	253, 317, 563, 707, 841, 885
Alw26I	GTCTC	2 cut(s)	111, 265
AlwI	GGATC	5 cut(s)	41, 362, 565, 1048, 1061
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	2 cut(s)	499, 887
ApeKI	GCWGC	3 cut(s)	590, 608, 611
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	4 cut(s)	81, 401, 500, 794
AsuC2I	CCSGG	1 cut(s)	596
AsuHPI	GGTGA	8 cut(s)	26, 32, 112, 290, 400, 445, 922, 937
AvaII	GGWCC	3 cut(s)	81, 401, 794
BamHI	GGATCC	1 cut(s)	1053
BanI	GGYRCC	1 cut(s)	56
BbsI	GAAGAC	3 cut(s)	48, 308, 659
BbvI	GCAGC	3 cut(s)	577, 595, 598
BccI	CCATC	7 cut(s)	24, 290, 314, 424, 806, 887, 1023
BceAI	ACGGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	2 cut(s)	243, 939
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	2 cut(s)	111, 265
BfaI	CTAG	1 cut(s)	708
BglII	AGATCT	1 cut(s)	1036
BisI	GCNGC	4 cut(s)	552, 591, 609, 612
BlsI	GCNGC	4 cut(s)	553, 592, 610, 613
Bme1390I	CCNGG	3 cut(s)	243, 596, 939
Bme18I	GGWCC	3 cut(s)	81, 401, 794
BmgT120I	GGNCC	4 cut(s)	81, 401, 500, 794
BmiI	GGNNCC	4 cut(s)	58, 402, 930, 1055
BmrFI	CCNGG	3 cut(s)	243, 596, 939
BpiI	GAAGAC	3 cut(s)	48, 308, 659
BpmI	CTGGAG	1 cut(s)	479
BpuEI	CTTGAG	1 cut(s)	857
BpuMI	CCSGG	1 cut(s)	596
BsaBI	GATNNNNATC	2 cut(s)	366, 738
BsaI	GGTCTC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	241, 594
BsaWI	WCCGGW	1 cut(s)	370
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 938
Bse1I	ACTGG	3 cut(s)	77, 83, 829
Bse8I	GATNNNNATC	2 cut(s)	366, 738
BseAI	TCCGGA	1 cut(s)	370
BseBI	CCWGG	2 cut(s)	243, 939
BseDI	CCNNGG	2 cut(s)	241, 594
BseGI	GGATG	4 cut(s)	400, 517, 739, 1034
BseJI	GATNNNNATC	2 cut(s)	366, 738
BseLI	CCNNNNNNNGG	2 cut(s)	508, 938
BseMII	CTCAG	1 cut(s)	1011
BseNI	ACTGG	3 cut(s)	77, 83, 829
BseRI	GAGGAG	2 cut(s)	510, 941
BseXI	GCAGC	3 cut(s)	577, 595, 598
BsgI	GTGCAG	1 cut(s)	1080
BshFI	GGCC	2 cut(s)	501, 889
BshNI	GGYRCC	1 cut(s)	56
BsiSI	CCGG	4 cut(s)	135, 153, 371, 596
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	508, 938
BsmAI	GTCTC	2 cut(s)	111, 265
BsmBI	CGTCTC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	414
BsmI	GAATGC	2 cut(s)	361, 1003
BsnI	GGCC	2 cut(s)	501, 889
Bso31I	GGTCTC	1 cut(s)	111
Bsp13I	TCCGGA	1 cut(s)	370
Bsp143I	GATC	7 cut(s)	33, 186, 367, 557, 915, 1036, 1053
BspACI	CCGC	3 cut(s)	551, 572, 614
BspANI	GGCC	2 cut(s)	501, 889
BspCNI	CTCAG	1 cut(s)	1012
BspEI	TCCGGA	1 cut(s)	370
BspLI	GGNNCC	4 cut(s)	58, 402, 930, 1055
BspPI	GGATC	5 cut(s)	41, 362, 565, 1048, 1061
BspT107I	GGYRCC	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	111
BsrI	ACTGG	3 cut(s)	77, 83, 829
BssECI	CCNNGG	2 cut(s)	241, 594
BssMI	GATC	7 cut(s)	33, 186, 367, 557, 915, 1036, 1053
Bst2UI	CCWGG	2 cut(s)	243, 939
Bst4CI	ACNGT	3 cut(s)	568, 910, 1006
Bst6I	CTCTTC	1 cut(s)	975
BstC8I	GCNNGC	1 cut(s)	887
BstDEI	CTNAG	3 cut(s)	657, 771, 1020
BstENI	CCTNNNNNAGG	1 cut(s)	936
BstF5I	GGATG	4 cut(s)	400, 517, 739, 1034
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	7 cut(s)	36, 189, 370, 560, 918, 1039, 1056
BstMAI	GTCTC	2 cut(s)	111, 265
BstMBI	GATC	7 cut(s)	33, 186, 367, 557, 915, 1036, 1053
BstMWI	GCNNNNNNNGC	2 cut(s)	560, 569
BstNI	CCWGG	2 cut(s)	243, 939
BstSCI	CCNGG	3 cut(s)	241, 594, 937
BstV1I	GCAGC	3 cut(s)	577, 595, 598
BstV2I	GAAGAC	3 cut(s)	48, 308, 659
BstX2I	RGATCY	3 cut(s)	367, 1036, 1053
BstYI	RGATCY	3 cut(s)	367, 1036, 1053
BsuRI	GGCC	2 cut(s)	501, 889
BtgZI	GCGATG	1 cut(s)	443
BtsCI	GGATG	4 cut(s)	400, 517, 739, 1034
BtsIMutI	CAGTG	3 cut(s)	76, 966, 1017
Cac8I	GCNNGC	1 cut(s)	887
CfoI	GCGC	1 cut(s)	538
Cfr13I	GGNCC	4 cut(s)	81, 401, 500, 794
CseI	GACGC	1 cut(s)	313
DdeI	CTNAG	3 cut(s)	657, 771, 1020
DpnI	GATC	7 cut(s)	35, 188, 369, 559, 917, 1038, 1055
DpnII	GATC	7 cut(s)	33, 186, 367, 557, 915, 1036, 1053
Eam1104I	CTCTTC	1 cut(s)	975
EarI	CTCTTC	1 cut(s)	975
Eco31I	GGTCTC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	3 cut(s)	81, 401, 794
Eco57I	CTGAAG	1 cut(s)	999
EcoNI	CCTNNNNNAGG	1 cut(s)	936
EcoRII	CCWGG	2 cut(s)	241, 937
EcoRV	GATATC	1 cut(s)	145
Esp3I	CGTCTC	1 cut(s)	265
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	414
Fnu4HI	GCNGC	4 cut(s)	552, 591, 609, 612
FokI	GGATG	4 cut(s)	407, 524, 746, 1041
Fsp4HI	GCNGC	4 cut(s)	552, 591, 609, 612
FspBI	CTAG	1 cut(s)	708
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	4 cut(s)	552, 591, 609, 612
GsuI	CTGGAG	1 cut(s)	479
HaeIII	GGCC	2 cut(s)	501, 889
HapII	CCGG	4 cut(s)	135, 153, 371, 596
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	1 cut(s)	538
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HinfI	GANTC	6 cut(s)	290, 521, 739, 832, 902, 942
HpaII	CCGG	4 cut(s)	135, 153, 371, 596
HphI	GGTGA	8 cut(s)	26, 32, 112, 290, 400, 445, 922, 937
Hpy188I	TCNGA	6 cut(s)	85, 295, 349, 798, 867, 1070
Hpy188III	TCNNGA	6 cut(s)	190, 371, 458, 836, 899, 977
HpyCH4III	ACNGT	3 cut(s)	568, 910, 1006
HpyCH4IV	ACGT	3 cut(s)	63, 258, 972
HpyCH4V	TGCA	2 cut(s)	702, 1061
HpyF10VI	GCNNNNNNNGC	2 cut(s)	560, 569
HpyF3I	CTNAG	3 cut(s)	657, 771, 1020
HpySE526I	ACGT	3 cut(s)	63, 258, 972
HspAI	GCGC	1 cut(s)	536
Kpn2I	TCCGGA	1 cut(s)	370
Kzo9I	GATC	7 cut(s)	33, 186, 367, 557, 915, 1036, 1053
LmnI	GCTCC	2 cut(s)	882, 928
Lsp1109I	GCAGC	3 cut(s)	577, 595, 598
MaeI	CTAG	1 cut(s)	708
MaeII	ACGT	3 cut(s)	63, 258, 972
MaeIII	GTNAC	3 cut(s)	20, 820, 943
MalI	GATC	7 cut(s)	35, 188, 369, 559, 917, 1038, 1055
MboI	GATC	7 cut(s)	33, 186, 367, 557, 915, 1036, 1053
MfeI	CAATTG	1 cut(s)	91
MflI	RGATCY	3 cut(s)	367, 1036, 1053
MluCI	AATT	6 cut(s)	91, 128, 515, 675, 697, 854
MlyI	GAGTC	1 cut(s)	951
MmeI	TCCRAC	1 cut(s)	725
MroI	TCCGGA	1 cut(s)	370
MseI	TTAA	5 cut(s)	255, 633, 669, 696, 728
MspI	CCGG	4 cut(s)	135, 153, 371, 596
MspR9I	CCNGG	3 cut(s)	243, 596, 939
MunI	CAATTG	1 cut(s)	91
Mva1269I	GAATGC	2 cut(s)	361, 1003
MvaI	CCWGG	2 cut(s)	243, 939
MwoI	GCNNNNNNNGC	2 cut(s)	560, 569
NciI	CCSGG	1 cut(s)	596
NdeII	GATC	7 cut(s)	33, 186, 367, 557, 915, 1036, 1053
NlaIV	GGNNCC	4 cut(s)	58, 402, 930, 1055
NmuCI	GTSAC	2 cut(s)	20, 943
PcsI	WCGNNNNNNNCGW	3 cut(s)	60, 195, 255
PctI	GAATGC	2 cut(s)	361, 1003
PfeI	GAWTC	5 cut(s)	290, 521, 739, 832, 902
PkrI	GCNGC	4 cut(s)	553, 592, 610, 613
PleI	GAGTC	1 cut(s)	950
PpsI	GAGTC	1 cut(s)	950
Psp6I	CCWGG	2 cut(s)	241, 937
PspGI	CCWGG	2 cut(s)	241, 937
PspN4I	GGNNCC	4 cut(s)	58, 402, 930, 1055
PspPI	GGNCC	4 cut(s)	81, 401, 500, 794
PsuI	RGATCY	3 cut(s)	367, 1036, 1053
SaqAI	TTAA	5 cut(s)	255, 633, 669, 696, 728
SatI	GCNGC	4 cut(s)	552, 591, 609, 612
Sau3AI	GATC	7 cut(s)	33, 186, 367, 557, 915, 1036, 1053
Sau96I	GGNCC	4 cut(s)	81, 401, 500, 794
SchI	GAGTC	1 cut(s)	951
ScrFI	CCNGG	3 cut(s)	243, 596, 939
SinI	GGWCC	3 cut(s)	81, 401, 794
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
Sse9I	AATT	6 cut(s)	91, 128, 515, 675, 697, 854
SsiI	CCGC	3 cut(s)	551, 572, 614
SspMI	CTAG	1 cut(s)	708
StyD4I	CCNGG	3 cut(s)	241, 594, 937
TaaI	ACNGT	3 cut(s)	568, 910, 1006
TaiI	ACGT	3 cut(s)	66, 261, 975
TaqI	TCGA	5 cut(s)	189, 198, 330, 524, 924
TaqII	GACCGA	2 cut(s)	418, 701
TasI	AATT	6 cut(s)	91, 128, 515, 675, 697, 854
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	5 cut(s)	290, 521, 739, 832, 902
Tru1I	TTAA	5 cut(s)	255, 633, 669, 696, 728
Tru9I	TTAA	5 cut(s)	255, 633, 669, 696, 728
TscAI	CASTG	3 cut(s)	83, 973, 1024
TseFI	GTSAC	2 cut(s)	20, 943
TseI	GCWGC	3 cut(s)	590, 608, 611
Tsp45I	GTSAC	2 cut(s)	20, 943
TspDTI	ATGAA	4 cut(s)	160, 378, 528, 845
TspGWI	ACGGA	1 cut(s)	1046
TspRI	CASTG	3 cut(s)	83, 973, 1024
VpaK11BI	GGWCC	3 cut(s)	81, 401, 794
XagI	CCTNNNNNAGG	1 cut(s)	936
XspI	CTAG	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.