Rroxscaffold_6G00402430

Activator of 90 kDa heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
24912293 .. 24913549
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402430.1

Sequence Viewer

Length: 1053 bp
ATGGCGAAGTACGGCGAGGGCGACAAGCGGTGGATCGTGGAAGACAGAGCCGACGGAGCGAACGTCCACAACTGGCACTGGGCCGAGACCGATTGCTTGGGCTGGTCACGTGACCTCCTCACCAAGCTCCTCTCCAACCTCACCATCCTCGACGGCGAAGGCGACCTCATCATCAAGACCAACAAGGTGGAGAAGGTCGAAGGCGACGCCTACGTCAACATTCGCAAGGGAAAGATTATCCCCGGCTACGAAATCAGCCTCAGTCTCTCCTGGGAGGGCGAGGCCAGAGACTCCGACGGCAAATCGCTGCTCAAGGTCGACGGCGCCGTCGAGATTCCTTACATCGCCGACGAGAATGCCGACGAGGACCCCGAGGTTAAGGTCTCGGTGAAGGACGAGGGCCCCATTGGGAGGAGGATTAAGGAGGCTATGGTGGCGAAGGGGAAGCCTGTGATTTTGGAGAAGGTTAGGGTTTATGTGCAGAGTATGGCGCAGGGTGGGCCGGCCAAGGACGAGGCCGAGGCGAAGAAGATTGCGCCGAAGACTAATAATAATTCGACGAGTTCCGCGGCGGCGGTGAAGAAGGAGGTGGCGGTGGAGAAGAAGGAGGTGAAGAAGAAGGAGAACAAGAAAGGGTTTAAGACGATTAGTATGACTGAGAAGTTTAGCTGCAGGGCGAGTAATTTGTATGAGATTTTGATGGATGAGAATAGATGGAAGGGGTTTACTCAGAGCAATGCTAAGATAAGTAAAGAGGTTGGAGGAGAGTTTAGTATTTTCGATGGGTCGGTGACGGGTAAGAATTTGGAGCTGCAGAATGGCAAGTTGATTGTGCAGAATTGGAGATTTGGGAGTTGGCCTGATGGGATTCAGTCGAAGGTGACACTTGCATTTGATGAGCCTGAACCGGGTCTAACAGTTGTCAAGCTAACTCATGTGGATGTTCCTGAGGAAGACAGATACGGGAATGCCACTGTGGTAGAGAATACTGAGAGAGGATGGCGGGATCTTATCTTTCAGAGGATAAGGGCAGTTTTTGGTTTCGGAATTTAA

Protein Analysis

350

Amino Acids

38.96

Weight (kDa)

5.91

Isoelectric Point (pI)

24.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aha1_N PF09229 29 - 165 1e-33 Activator of Hsp90 ATPase, N-terminal
AHSA1 PF08327 226 - 346 9.4e-14 Activator of Hsp90 ATPase homolog 1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 212, 326
AccB1I GGYRCC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 318
AccII CGCG 1 cut(s) 569
AciI CCGC 7 cut(s) 28, 567, 569, 572, 575, 593, 1003
AclWI GGATC 2 cut(s) 41, 1014
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 2 cut(s) 802, 1047
AcvI CACGTG 1 cut(s) 110
AcyI GRCGYC 2 cut(s) 207, 324
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 2 cut(s) 411, 908
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 4 cut(s) 127, 669, 811, 928
AluI AGCT 4 cut(s) 127, 669, 811, 928
Alw26I GTCTC 4 cut(s) 80, 269, 282, 388
AlwI GGATC 2 cut(s) 41, 1014
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 7 cut(s) 81, 282, 400, 500, 504, 516, 857
ApaI GGGCCC 1 cut(s) 404
ApeKI GCWGC 3 cut(s) 307, 669, 811
ApoI RAATTY 2 cut(s) 802, 1047
AspLEI GCGC 3 cut(s) 326, 493, 538
AspS9I GGNCC 5 cut(s) 81, 367, 400, 401, 500
AsuC2I CCSGG 2 cut(s) 243, 909
AsuHPI GGTGA 7 cut(s) 112, 133, 400, 589, 622, 802, 892
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 1 cut(s) 367
AxyI CCTNAGG 1 cut(s) 948
BaeGI GKGCMC 1 cut(s) 404
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 404
BbrPI CACGTG 1 cut(s) 110
BbsI GAAGAC 3 cut(s) 48, 548, 960
BbvI GCAGC 3 cut(s) 294, 656, 798
BccI CCATC 6 cut(s) 152, 694, 708, 776, 857, 993
BceAI ACGGC 5 cut(s) 28, 169, 311, 313, 337
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 1 cut(s) 271
BcnI CCSGG 2 cut(s) 243, 909
BcoDI GTCTC 4 cut(s) 80, 269, 282, 388
BfmI CTRYAG 2 cut(s) 670, 812
BfoI RGCGCY 1 cut(s) 327
BisI GCNGC 5 cut(s) 308, 570, 573, 670, 812
BlsI GCNGC 5 cut(s) 309, 571, 574, 671, 813
Bme1390I CCNGG 3 cut(s) 243, 271, 909
Bme18I GGWCC 1 cut(s) 367
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 5 cut(s) 81, 367, 400, 401, 500
BmiI GGNNCC 4 cut(s) 325, 369, 402, 403
BmrFI CCNGG 3 cut(s) 243, 271, 909
BmrI ACTGGG 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 88
BpiI GAAGAC 3 cut(s) 48, 548, 960
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 2 cut(s) 243, 909
BsaAI YACGTR 1 cut(s) 110
BsaHI GRCGYC 2 cut(s) 207, 324
BsaI GGTCTC 2 cut(s) 80, 388
BsaJI CCNNGG 6 cut(s) 241, 270, 372, 507, 519, 567
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 99, 129
Bsc4I CCNNNNNNNGG 2 cut(s) 411, 908
Bse118I RCCGGY 1 cut(s) 502
Bse1I ACTGG 2 cut(s) 77, 83
Bse21I CCTNAGG 1 cut(s) 948
Bse3DI GCAATG 1 cut(s) 742
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 6 cut(s) 241, 270, 372, 507, 519, 567
BseGI GGATG 4 cut(s) 144, 709, 946, 1004
BseLI CCNNNNNNNGG 2 cut(s) 411, 908
BseMI GCAATG 1 cut(s) 742
BseMII CTCAG 5 cut(s) 274, 648, 743, 939, 981
BseNI ACTGG 2 cut(s) 77, 83
BseRI GAGGAG 4 cut(s) 107, 119, 427, 777
BseSI GKGCMC 1 cut(s) 404
BseXI GCAGC 3 cut(s) 294, 656, 798
BsgI GTGCAG 2 cut(s) 500, 854
Bsh1236I CGCG 1 cut(s) 569
BshFI GGCC 7 cut(s) 83, 284, 402, 502, 506, 518, 859
BshNI GGYRCC 1 cut(s) 323
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 3 cut(s) 243, 503, 908
BslI CCNNNNNNNGG 2 cut(s) 411, 908
BsmAI GTCTC 4 cut(s) 80, 269, 282, 388
BsmI GAATGC 2 cut(s) 361, 973
BsnI GGCC 7 cut(s) 83, 284, 402, 502, 506, 518, 859
Bso31I GGTCTC 2 cut(s) 80, 388
BsoBI CYCGRG 1 cut(s) 371
Bsp120I GGGCCC 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 404
Bsp143I GATC 2 cut(s) 33, 1006
BspACI CCGC 7 cut(s) 28, 567, 569, 572, 575, 593, 1003
BspANI GGCC 7 cut(s) 83, 284, 402, 502, 506, 518, 859
BspCNI CTCAG 5 cut(s) 273, 649, 742, 940, 982
BspFNI CGCG 1 cut(s) 569
BspLI GGNNCC 4 cut(s) 325, 369, 402, 403
BspMAI CTGCAG 2 cut(s) 674, 816
BspPI GGATC 2 cut(s) 41, 1014
BspT107I GGYRCC 1 cut(s) 323
BspTNI GGTCTC 2 cut(s) 80, 388
BsrDI GCAATG 1 cut(s) 742
BsrFI RCCGGY 1 cut(s) 502
BsrI ACTGG 2 cut(s) 77, 83
BssAI RCCGGY 1 cut(s) 502
BssECI CCNNGG 6 cut(s) 241, 270, 372, 507, 519, 567
BssMI GATC 2 cut(s) 33, 1006
BssNI GRCGYC 2 cut(s) 207, 324
BssT1I CCWWGG 1 cut(s) 507
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 2 cut(s) 919, 976
BstACI GRCGYC 2 cut(s) 207, 324
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 6 cut(s) 260, 657, 729, 741, 948, 990
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 4 cut(s) 144, 709, 946, 1004
BstFNI CGCG 1 cut(s) 569
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 3 cut(s) 326, 493, 538
BstKTI GATC 2 cut(s) 36, 1009
BstMAI GTCTC 4 cut(s) 80, 269, 282, 388
BstMBI GATC 2 cut(s) 33, 1006
BstMWI GCNNNNNNNGC 3 cut(s) 56, 434, 499
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 3 cut(s) 241, 269, 907
BstSFI CTRYAG 2 cut(s) 670, 812
BstSLI GKGCMC 1 cut(s) 404
BstUI CGCG 1 cut(s) 569
BstV1I GCAGC 3 cut(s) 294, 656, 798
BstV2I GAAGAC 3 cut(s) 48, 548, 960
BstX2I RGATCY 1 cut(s) 1006
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 1 cut(s) 1006
Bsu36I CCTNAGG 1 cut(s) 948
BsuRI GGCC 7 cut(s) 83, 284, 402, 502, 506, 518, 859
BtgI CCRYGG 1 cut(s) 567
BtgZI GCGATG 1 cut(s) 328
BtsCI GGATG 4 cut(s) 144, 709, 946, 1004
BtsIMutI CAGTG 2 cut(s) 76, 972
Cac8I GCNNGC 1 cut(s) 504
CfoI GCGC 3 cut(s) 326, 493, 538
Cfr10I RCCGGY 1 cut(s) 502
Cfr13I GGNCC 5 cut(s) 81, 367, 400, 401, 500
Cfr42I CCGCGG 1 cut(s) 570
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 935
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 6 cut(s) 260, 657, 729, 741, 948, 990
DinI GGCGCC 1 cut(s) 325
DpnI GATC 2 cut(s) 35, 1008
DpnII GATC 2 cut(s) 33, 1006
DrdI GACNNNNNNGTC 2 cut(s) 212, 326
DseDI GACNNNNNNGTC 2 cut(s) 212, 326
EaeI YGGCCR 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 507
Eco24I GRGCYC 1 cut(s) 404
Eco31I GGTCTC 2 cut(s) 80, 388
Eco47I GGWCC 1 cut(s) 367
Eco72I CACGTG 1 cut(s) 110
Eco81I CCTNAGG 1 cut(s) 948
Eco88I CYCGRG 1 cut(s) 371
EcoO109I RGGNCCY 3 cut(s) 367, 400, 401
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 404
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 1 cut(s) 938
FaiI YATR 6 cut(s) 431, 477, 488, 653, 690, 936
FatI CATG 1 cut(s) 934
FauI CCCGC 1 cut(s) 996
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 5 cut(s) 308, 570, 573, 670, 812
FokI GGATG 4 cut(s) 131, 716, 953, 1011
FriOI GRGCYC 1 cut(s) 404
FseI GGCCGGCC 1 cut(s) 506
Fsp4HI GCNGC 5 cut(s) 308, 570, 573, 670, 812
GlaI GCGC 3 cut(s) 325, 492, 537
GluI GCNGC 5 cut(s) 308, 570, 573, 670, 812
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 7 cut(s) 83, 284, 402, 502, 506, 518, 859
HapII CCGG 3 cut(s) 243, 503, 908
HgaI GACGC 1 cut(s) 215
HhaI GCGC 3 cut(s) 326, 493, 538
Hin1I GRCGYC 2 cut(s) 207, 324
Hin1II CATG 1 cut(s) 938
Hin6I GCGC 3 cut(s) 324, 491, 536
HinP1I GCGC 3 cut(s) 324, 491, 536
HincII GTYRAC 2 cut(s) 217, 319
HindII GTYRAC 2 cut(s) 217, 319
HinfI GANTC 3 cut(s) 290, 334, 868
HpaII CCGG 3 cut(s) 243, 503, 908
HphI GGTGA 7 cut(s) 112, 133, 400, 589, 622, 802, 892
Hpy166II GTNNAC 4 cut(s) 67, 217, 319, 726
Hpy188I TCNGA 4 cut(s) 295, 732, 1020, 1046
Hpy188III TCNNGA 3 cut(s) 175, 331, 947
Hpy8I GTNNAC 4 cut(s) 67, 217, 319, 726
Hpy99I CGWCG 9 cut(s) 56, 155, 209, 299, 323, 332, 353, 365, 562
HpyCH4III ACNGT 2 cut(s) 919, 976
HpyCH4IV ACGT 3 cut(s) 63, 109, 213
HpyCH4V TGCA 5 cut(s) 481, 672, 814, 835, 890
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 434, 499
HpyF3I CTNAG 6 cut(s) 260, 657, 729, 741, 948, 990
HpySE526I ACGT 3 cut(s) 63, 109, 213
Hsp92I GRCGYC 2 cut(s) 207, 324
Hsp92II CATG 1 cut(s) 938
HspAI GCGC 3 cut(s) 324, 491, 536
KasI GGCGCC 1 cut(s) 323
KroI GCCGGC 1 cut(s) 502
KroNI GCCGGC 1 cut(s) 504
KspI CCGCGG 1 cut(s) 570
Kzo9I GATC 2 cut(s) 33, 1006
LmnI GCTCC 3 cut(s) 56, 132, 808
Lsp1109I GCAGC 3 cut(s) 294, 656, 798
MaeII ACGT 3 cut(s) 63, 109, 213
MaeIII GTNAC 4 cut(s) 105, 110, 790, 880
MalI GATC 2 cut(s) 35, 1008
MboI GATC 2 cut(s) 33, 1006
MboII GAAGA 9 cut(s) 53, 538, 541, 553, 592, 613, 625, 628, 965
MflI RGATCY 1 cut(s) 1006
MhlI GDGCHC 1 cut(s) 404
MluCI AATT 5 cut(s) 553, 682, 802, 838, 1047
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 3 cut(s) 159, 318, 739
MroNI GCCGGC 1 cut(s) 502
MseI TTAA 4 cut(s) 378, 420, 639, 1051
MslI CAYNNNNRTG 1 cut(s) 939
MspA1I CMGCKG 1 cut(s) 569
MspI CCGG 3 cut(s) 243, 503, 908
MspR9I CCNGG 3 cut(s) 243, 271, 909
Mva1269I GAATGC 2 cut(s) 361, 973
MvaI CCWGG 1 cut(s) 271
MvnI CGCG 1 cut(s) 569
MwoI GCNNNNNNNGC 3 cut(s) 56, 434, 499
NaeI GCCGGC 1 cut(s) 504
NarI GGCGCC 1 cut(s) 324
NciI CCSGG 2 cut(s) 243, 909
NdeII GATC 2 cut(s) 33, 1006
NgoMIV GCCGGC 1 cut(s) 502
NlaIII CATG 1 cut(s) 938
NlaIV GGNNCC 4 cut(s) 325, 369, 402, 403
NmeAIII GCCGAG 2 cut(s) 109, 544
NmuCI GTSAC 4 cut(s) 105, 110, 790, 880
PcsI WCGNNNNNNNCGW 7 cut(s) 18, 60, 159, 324, 327, 357, 369
PctI GAATGC 2 cut(s) 361, 973
PdiI GCCGGC 1 cut(s) 504
PfeI GAWTC 2 cut(s) 334, 868
PkrI GCNGC 5 cut(s) 309, 571, 574, 671, 813
PleI GAGTC 1 cut(s) 284
PluTI GGCGCC 1 cut(s) 327
PmaCI CACGTG 1 cut(s) 110
PmlI CACGTG 1 cut(s) 110
PpsI GAGTC 1 cut(s) 284
Ppu21I YACGTR 1 cut(s) 110
PpuMI RGGWCCY 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 269
PspCI CACGTG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 4 cut(s) 325, 369, 402, 403
PspOMI GGGCCC 1 cut(s) 400
PspPI GGNCC 5 cut(s) 81, 367, 400, 401, 500
PspPPI RGGWCCY 1 cut(s) 367
PstI CTGCAG 2 cut(s) 674, 816
PsuI RGATCY 1 cut(s) 1006
RigI GGCCGGCC 1 cut(s) 506
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 939
SacII CCGCGG 1 cut(s) 570
SalI GTCGAC 1 cut(s) 317
SaqAI TTAA 4 cut(s) 378, 420, 639, 1051
SatI GCNGC 5 cut(s) 308, 570, 573, 670, 812
Sau3AI GATC 2 cut(s) 33, 1006
Sau96I GGNCC 5 cut(s) 81, 367, 400, 401, 500
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 3 cut(s) 243, 271, 909
SduI GDGCHC 1 cut(s) 404
SfcI CTRYAG 2 cut(s) 670, 812
SfoI GGCGCC 1 cut(s) 325
Sfr303I CCGCGG 1 cut(s) 570
SgrBI CCGCGG 1 cut(s) 570
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 939
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 5 cut(s) 553, 682, 802, 838, 1047
SsiI CCGC 7 cut(s) 28, 567, 569, 572, 575, 593, 1003
SspDI GGCGCC 1 cut(s) 323
StyD4I CCNGG 3 cut(s) 241, 269, 907
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 2 cut(s) 919, 976
TaiI ACGT 3 cut(s) 66, 112, 216
TaqI TCGA 7 cut(s) 150, 198, 318, 330, 557, 780, 875
TaqII GACCGA 1 cut(s) 104
TasI AATT 5 cut(s) 553, 682, 802, 838, 1047
TauI GCSGC 2 cut(s) 572, 575
TfiI GAWTC 2 cut(s) 334, 868
Tru1I TTAA 4 cut(s) 378, 420, 639, 1051
Tru9I TTAA 4 cut(s) 378, 420, 639, 1051
TscAI CASTG 2 cut(s) 83, 979
TseFI GTSAC 4 cut(s) 105, 110, 790, 880
TseI GCWGC 3 cut(s) 307, 669, 811
Tsp45I GTSAC 4 cut(s) 105, 110, 790, 880
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 2 cut(s) 83, 979
VpaK11BI GGWCC 1 cut(s) 367
XapI RAATTY 2 cut(s) 802, 1047
XmiI GTMKAC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.