RchiOBHm_Chr3g0479291

Activator of 90 kDa heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
25085473 .. 25088527
3055 bp
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UTR
Exon/CDS
Intron
PRQ44439

Sequence Viewer

Length: 1053 bp
ATGGCGAAGTACGGCGAGGGCGACAAGCGGTGGATCGTGGAAGACAGACCCGACGGAGCGAACGTCCACAACTGGCACTGGGCGGAGACCGATTGCCTGGGCTGGTCACGTGACCTCCTCACCAAGCTCCTCTCCAACCTCACCATCCTCGACGGCGAAGGCGACCTCTTCATCAAGACCAACAAGGTCGACAAGGTCGAAGGCGACGCCTACGTCAACATTCGCAAGGGCAAGATCATCCCCGGCTACGAAATCAGCCTCAGTCTCTCATGGGAGGGCGAGGCCAGAGACTCCGACGGCAAATCGCTGCTCAAGGTCGACGGCGCCGTCGAGATTCCCTACATCGCCGACGAGAATGCCGACGAGGACCCCGAGGTTAGGGTCTCGGTGAAGGACGAGGGCCCCATTGGGAGGAGGATTAAGGAGGCTATGGTGGCGAAGGGGAAGCCTGTGATTTTGGACAAGGTTAGGGTTTATGTGCAGAGTATGGCGCAGGGTGGGCCGGCCAAGGATGAGGCCGAGGCCAAGAAGATTGCGCCGAAGACTAATAATAATTCGACGAGTTCCGGGGCGGCGGTGAAGAAGGAGGTGGTGGTGGAGAAGAAGGAGGTGAAGAAGAAGGAGAGCAAGAAAGGGTTTAAGACGATTAGTATGACTGAGAAGTTTAGCTGCAGGGCGAGTAATTTGTATGAGATTTTGATGGATGAGAATAGATGGAAGGGGTTTACTCAGAGCAATGCTAAGATAAGTAAAGAGGTTGGAGGAGAGTTTAGTATTTTTGATGGGTCGGTGACGGGTAGGAATTTGGAGCTGCAGAATGGCAAGTTGATTGTGCAGAATTGGAGATTTGGGAGCTGGCCTGATGGGATTGAGTCGAAGGTGACACTTACATTTGATGAGCCTGAACCTGGTCTAACAGTTGTCAAACTAACCCATGTGGATGTTCCTGAGGAAGACAGATACGGGAATGCCACTGTGGTAGAGAATACTGAGAGAGGATGGCGGGATCTTATCTTTCAGAGGATAAGGGCAGTTTTTGGTTTTGGAATTTGA

Protein Analysis

350

Amino Acids

39.07

Weight (kDa)

5.73

Isoelectric Point (pI)

25.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aha1_N PF09229 29 - 165 5.3e-33 Activator of Hsp90 ATPase, N-terminal
AHSA1 PF08327 226 - 346 9e-15 Activator of Hsp90 ATPase homolog 1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 212, 326
AccB1I GGYRCC 1 cut(s) 323
AccI GTMKAC 2 cut(s) 189, 318
AciI CCGC 5 cut(s) 28, 83, 572, 575, 1003
AclWI GGATC 2 cut(s) 41, 1014
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 2 cut(s) 802, 1047
AcvI CACGTG 1 cut(s) 110
AcyI GRCGYC 2 cut(s) 207, 324
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 3 cut(s) 378, 411, 908
AjnI CCWGG 2 cut(s) 96, 907
AluBI AGCT 4 cut(s) 127, 669, 811, 855
AluI AGCT 4 cut(s) 127, 669, 811, 855
Alw26I GTCTC 4 cut(s) 80, 269, 282, 388
AlwI GGATC 2 cut(s) 41, 1014
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 7 cut(s) 282, 400, 500, 504, 516, 522, 857
ApaI GGGCCC 1 cut(s) 404
ApeKI GCWGC 3 cut(s) 307, 669, 811
ApoI RAATTY 2 cut(s) 802, 1047
AspLEI GCGC 3 cut(s) 326, 493, 538
AspS9I GGNCC 4 cut(s) 367, 400, 401, 500
AsuC2I CCSGG 2 cut(s) 243, 568
AsuHPI GGTGA 7 cut(s) 112, 133, 400, 589, 622, 802, 892
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 1 cut(s) 367
AxyI CCTNAGG 1 cut(s) 948
BaeGI GKGCMC 1 cut(s) 404
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 404
BbrPI CACGTG 1 cut(s) 110
BbsI GAAGAC 3 cut(s) 48, 548, 960
BbvI GCAGC 3 cut(s) 294, 656, 798
BccI CCATC 6 cut(s) 152, 694, 708, 776, 857, 993
BceAI ACGGC 5 cut(s) 28, 169, 311, 313, 337
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 2 cut(s) 98, 909
BcnI CCSGG 2 cut(s) 243, 568
BcoDI GTCTC 4 cut(s) 80, 269, 282, 388
BfmI CTRYAG 2 cut(s) 670, 812
BfoI RGCGCY 1 cut(s) 327
BisI GCNGC 4 cut(s) 308, 573, 670, 812
BlsI GCNGC 4 cut(s) 309, 574, 671, 813
Bme1390I CCNGG 4 cut(s) 98, 243, 568, 909
Bme18I GGWCC 1 cut(s) 367
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 4 cut(s) 367, 400, 401, 500
BmiI GGNNCC 4 cut(s) 325, 369, 402, 403
BmrFI CCNGG 4 cut(s) 98, 243, 568, 909
BmrI ACTGGG 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 88
BpiI GAAGAC 3 cut(s) 48, 548, 960
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 2 cut(s) 243, 568
BsaAI YACGTR 1 cut(s) 110
BsaHI GRCGYC 2 cut(s) 207, 324
BsaI GGTCTC 2 cut(s) 80, 388
BsaJI CCNNGG 6 cut(s) 97, 241, 372, 507, 519, 567
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 99, 129
Bsc4I CCNNNNNNNGG 3 cut(s) 378, 411, 908
Bse118I RCCGGY 1 cut(s) 502
Bse1I ACTGG 2 cut(s) 77, 83
Bse21I CCTNAGG 1 cut(s) 948
Bse3DI GCAATG 1 cut(s) 742
BseBI CCWGG 2 cut(s) 98, 909
BseDI CCNNGG 6 cut(s) 97, 241, 372, 507, 519, 567
BseGI GGATG 6 cut(s) 144, 237, 517, 709, 946, 1004
BseLI CCNNNNNNNGG 3 cut(s) 378, 411, 908
BseMI GCAATG 1 cut(s) 742
BseMII CTCAG 5 cut(s) 274, 648, 743, 939, 981
BseNI ACTGG 2 cut(s) 77, 83
BseRI GAGGAG 4 cut(s) 107, 119, 427, 777
BseSI GKGCMC 1 cut(s) 404
BseXI GCAGC 3 cut(s) 294, 656, 798
BsgI GTGCAG 2 cut(s) 500, 854
BshFI GGCC 7 cut(s) 284, 402, 502, 506, 518, 524, 859
BshNI GGYRCC 1 cut(s) 323
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 3 cut(s) 243, 503, 567
BslI CCNNNNNNNGG 3 cut(s) 378, 411, 908
BsmAI GTCTC 4 cut(s) 80, 269, 282, 388
BsmI GAATGC 2 cut(s) 361, 973
BsnI GGCC 7 cut(s) 284, 402, 502, 506, 518, 524, 859
Bso31I GGTCTC 2 cut(s) 80, 388
BsoBI CYCGRG 1 cut(s) 371
Bsp120I GGGCCC 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 404
Bsp143I GATC 3 cut(s) 33, 234, 1006
BspACI CCGC 5 cut(s) 28, 83, 572, 575, 1003
BspANI GGCC 7 cut(s) 284, 402, 502, 506, 518, 524, 859
BspCNI CTCAG 5 cut(s) 273, 649, 742, 940, 982
BspLI GGNNCC 4 cut(s) 325, 369, 402, 403
BspMAI CTGCAG 2 cut(s) 674, 816
BspPI GGATC 2 cut(s) 41, 1014
BspT107I GGYRCC 1 cut(s) 323
BspTNI GGTCTC 2 cut(s) 80, 388
BsrDI GCAATG 1 cut(s) 742
BsrFI RCCGGY 1 cut(s) 502
BsrI ACTGG 2 cut(s) 77, 83
BssAI RCCGGY 1 cut(s) 502
BssECI CCNNGG 6 cut(s) 97, 241, 372, 507, 519, 567
BssMI GATC 3 cut(s) 33, 234, 1006
BssNI GRCGYC 2 cut(s) 207, 324
BssT1I CCWWGG 1 cut(s) 507
Bst2UI CCWGG 2 cut(s) 98, 909
Bst4CI ACNGT 2 cut(s) 919, 976
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 2 cut(s) 207, 324
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 504, 857
BstDEI CTNAG 6 cut(s) 260, 657, 729, 741, 948, 990
BstF5I GGATG 6 cut(s) 144, 237, 517, 709, 946, 1004
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 3 cut(s) 326, 493, 538
BstKTI GATC 3 cut(s) 36, 237, 1009
BstMAI GTCTC 4 cut(s) 80, 269, 282, 388
BstMBI GATC 3 cut(s) 33, 234, 1006
BstMWI GCNNNNNNNGC 2 cut(s) 434, 499
BstNI CCWGG 2 cut(s) 98, 909
BstSCI CCNGG 4 cut(s) 96, 241, 566, 907
BstSFI CTRYAG 2 cut(s) 670, 812
BstSLI GKGCMC 1 cut(s) 404
BstV1I GCAGC 3 cut(s) 294, 656, 798
BstV2I GAAGAC 3 cut(s) 48, 548, 960
BstX2I RGATCY 1 cut(s) 1006
BstYI RGATCY 1 cut(s) 1006
Bsu36I CCTNAGG 1 cut(s) 948
BsuRI GGCC 7 cut(s) 284, 402, 502, 506, 518, 524, 859
BtgZI GCGATG 1 cut(s) 328
BtsCI GGATG 6 cut(s) 144, 237, 517, 709, 946, 1004
BtsIMutI CAGTG 2 cut(s) 76, 972
Cac8I GCNNGC 2 cut(s) 504, 857
CfoI GCGC 3 cut(s) 326, 493, 538
Cfr10I RCCGGY 1 cut(s) 502
Cfr13I GGNCC 4 cut(s) 367, 400, 401, 500
CseI GACGC 1 cut(s) 215
CsiI ACCWGGT 1 cut(s) 907
Csp6I GTAC 1 cut(s) 10
CviAII CATG 2 cut(s) 270, 935
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 6 cut(s) 260, 657, 729, 741, 948, 990
DinI GGCGCC 1 cut(s) 325
DpnI GATC 3 cut(s) 35, 236, 1008
DpnII GATC 3 cut(s) 33, 234, 1006
DrdI GACNNNNNNGTC 2 cut(s) 212, 326
DseDI GACNNNNNNGTC 2 cut(s) 212, 326
EaeI YGGCCR 1 cut(s) 504
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
EciI GGCGGA 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 507
Eco24I GRGCYC 1 cut(s) 404
Eco31I GGTCTC 2 cut(s) 80, 388
Eco47I GGWCC 1 cut(s) 367
Eco72I CACGTG 1 cut(s) 110
Eco81I CCTNAGG 1 cut(s) 948
Eco88I CYCGRG 1 cut(s) 371
EcoO109I RGGNCCY 3 cut(s) 367, 400, 401
EcoRII CCWGG 2 cut(s) 96, 907
EcoT14I CCWWGG 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 404
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 2 cut(s) 273, 938
FaiI YATR 7 cut(s) 271, 431, 477, 488, 653, 690, 936
FatI CATG 2 cut(s) 269, 934
FauI CCCGC 1 cut(s) 996
FblI GTMKAC 2 cut(s) 189, 318
Fnu4HI GCNGC 4 cut(s) 308, 573, 670, 812
FokI GGATG 6 cut(s) 131, 224, 524, 716, 953, 1011
FriOI GRGCYC 1 cut(s) 404
FseI GGCCGGCC 1 cut(s) 506
Fsp4HI GCNGC 4 cut(s) 308, 573, 670, 812
GlaI GCGC 3 cut(s) 325, 492, 537
GluI GCNGC 4 cut(s) 308, 573, 670, 812
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 7 cut(s) 284, 402, 502, 506, 518, 524, 859
HapII CCGG 3 cut(s) 243, 503, 567
HgaI GACGC 1 cut(s) 215
HhaI GCGC 3 cut(s) 326, 493, 538
Hin1I GRCGYC 2 cut(s) 207, 324
Hin1II CATG 2 cut(s) 273, 938
Hin6I GCGC 3 cut(s) 324, 491, 536
HinP1I GCGC 3 cut(s) 324, 491, 536
HincII GTYRAC 3 cut(s) 190, 217, 319
HindII GTYRAC 3 cut(s) 190, 217, 319
HinfI GANTC 3 cut(s) 290, 334, 872
HpaII CCGG 3 cut(s) 243, 503, 567
HphI GGTGA 7 cut(s) 112, 133, 400, 589, 622, 802, 892
Hpy166II GTNNAC 5 cut(s) 67, 190, 217, 319, 726
Hpy188I TCNGA 3 cut(s) 295, 732, 1020
Hpy188III TCNNGA 3 cut(s) 175, 331, 947
Hpy8I GTNNAC 5 cut(s) 67, 190, 217, 319, 726
Hpy99I CGWCG 9 cut(s) 56, 155, 209, 299, 323, 332, 353, 365, 562
HpyAV CCTTC 9 cut(s) 152, 194, 385, 433, 577, 598, 613, 712, 871
HpyCH4III ACNGT 2 cut(s) 919, 976
HpyCH4IV ACGT 3 cut(s) 63, 109, 213
HpyCH4V TGCA 4 cut(s) 481, 672, 814, 835
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 499
HpyF3I CTNAG 6 cut(s) 260, 657, 729, 741, 948, 990
HpySE526I ACGT 3 cut(s) 63, 109, 213
Hsp92I GRCGYC 2 cut(s) 207, 324
Hsp92II CATG 2 cut(s) 273, 938
HspAI GCGC 3 cut(s) 324, 491, 536
KasI GGCGCC 1 cut(s) 323
KroI GCCGGC 1 cut(s) 502
KroNI GCCGGC 1 cut(s) 504
Kzo9I GATC 3 cut(s) 33, 234, 1006
LmnI GCTCC 4 cut(s) 56, 132, 808, 852
Lsp1109I GCAGC 3 cut(s) 294, 656, 798
MabI ACCWGGT 1 cut(s) 907
MaeII ACGT 3 cut(s) 63, 109, 213
MaeIII GTNAC 4 cut(s) 105, 110, 790, 880
MalI GATC 3 cut(s) 35, 236, 1008
MboI GATC 3 cut(s) 33, 234, 1006
MboII GAAGA 9 cut(s) 53, 160, 541, 553, 592, 613, 625, 628, 965
MflI RGATCY 1 cut(s) 1006
MhlI GDGCHC 1 cut(s) 404
MluCI AATT 5 cut(s) 553, 682, 802, 838, 1047
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 2 cut(s) 284, 881
MmeI TCCRAC 3 cut(s) 159, 318, 739
MroNI GCCGGC 1 cut(s) 502
MseI TTAA 2 cut(s) 420, 639
MslI CAYNNNNRTG 1 cut(s) 939
MspI CCGG 3 cut(s) 243, 503, 567
MspR9I CCNGG 4 cut(s) 98, 243, 568, 909
Mva1269I GAATGC 2 cut(s) 361, 973
MvaI CCWGG 2 cut(s) 98, 909
MwoI GCNNNNNNNGC 2 cut(s) 434, 499
NaeI GCCGGC 1 cut(s) 504
NarI GGCGCC 1 cut(s) 324
NciI CCSGG 2 cut(s) 243, 568
NdeII GATC 3 cut(s) 33, 234, 1006
NgoMIV GCCGGC 1 cut(s) 502
NlaIII CATG 2 cut(s) 273, 938
NlaIV GGNNCC 4 cut(s) 325, 369, 402, 403
NmeAIII GCCGAG 1 cut(s) 544
NmuCI GTSAC 4 cut(s) 105, 110, 790, 880
PcsI WCGNNNNNNNCGW 8 cut(s) 18, 60, 159, 195, 324, 327, 357, 369
PctI GAATGC 2 cut(s) 361, 973
PdiI GCCGGC 1 cut(s) 504
PfeI GAWTC 1 cut(s) 334
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 4 cut(s) 309, 574, 671, 813
PleI GAGTC 2 cut(s) 284, 880
PluTI GGCGCC 1 cut(s) 327
PmaCI CACGTG 1 cut(s) 110
PmlI CACGTG 1 cut(s) 110
PpsI GAGTC 2 cut(s) 284, 880
Ppu21I YACGTR 1 cut(s) 110
PpuMI RGGWCCY 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 96, 907
PspCI CACGTG 1 cut(s) 110
PspGI CCWGG 2 cut(s) 96, 907
PspN4I GGNNCC 4 cut(s) 325, 369, 402, 403
PspOMI GGGCCC 1 cut(s) 400
PspPI GGNCC 4 cut(s) 367, 400, 401, 500
PspPPI RGGWCCY 1 cut(s) 367
PstI CTGCAG 2 cut(s) 674, 816
PsuI RGATCY 1 cut(s) 1006
PsyI GACNNNGTC 1 cut(s) 194
RigI GGCCGGCC 1 cut(s) 506
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 939
SalI GTCGAC 2 cut(s) 188, 317
SaqAI TTAA 2 cut(s) 420, 639
SatI GCNGC 4 cut(s) 308, 573, 670, 812
Sau3AI GATC 3 cut(s) 33, 234, 1006
Sau96I GGNCC 4 cut(s) 367, 400, 401, 500
SchI GAGTC 2 cut(s) 284, 881
ScrFI CCNGG 4 cut(s) 98, 243, 568, 909
SduI GDGCHC 1 cut(s) 404
SexAI ACCWGGT 1 cut(s) 907
SfcI CTRYAG 2 cut(s) 670, 812
SfoI GGCGCC 1 cut(s) 325
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 939
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 5 cut(s) 553, 682, 802, 838, 1047
SsiI CCGC 5 cut(s) 28, 83, 572, 575, 1003
SspDI GGCGCC 1 cut(s) 323
StyD4I CCNGG 4 cut(s) 96, 241, 566, 907
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 2 cut(s) 919, 976
TaiI ACGT 3 cut(s) 66, 112, 216
TaqI TCGA 7 cut(s) 150, 189, 198, 318, 330, 557, 875
TaqII GACCGA 1 cut(s) 104
TasI AATT 5 cut(s) 553, 682, 802, 838, 1047
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 2 cut(s) 420, 639
Tru9I TTAA 2 cut(s) 420, 639
TscAI CASTG 2 cut(s) 83, 979
TseFI GTSAC 4 cut(s) 105, 110, 790, 880
TseI GCWGC 3 cut(s) 307, 669, 811
Tsp45I GTSAC 4 cut(s) 105, 110, 790, 880
TspDTI ATGAA 1 cut(s) 160
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 2 cut(s) 83, 979
Tth111I GACNNNGTC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 367
XapI RAATTY 2 cut(s) 802, 1047
XmiI GTMKAC 2 cut(s) 189, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.