Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026945.1

Orthogroup ID

OG0009966

Physical Location & Seq

Genomic Coordinates Forward (+)

4 .. 1180

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026945.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggtggccaaggggaagcctgtgattttggacaaggttagggtttatgtgcagagtatggcgcagggtgggccggccaaggatgaggccgaggccaagaagattgcgccgaagactaataataattcgacgagttccggggcggcggtgaagaaggaggtggtggtggagaagaaggaggtgaagaagaaggagaccaagaaagggtttaagacgattagtatgactgagaagtttagctgcagggcgagtaatttgtatgagattttgatggatgagaatagatggaaggggtttactcagagcaatgctaagataagtaaagaggttggaggagagtttagtattttcgatgggtcggtgaccggtaggaatttggagctgcagaatggcaagttgattgtgcagaattggagatttgggagttggcctgatgggattgagtcaaaggtgacacttacatttgatgagcctgaacctggtctaacagttgtcaagctaacccatgtggatgttcctgaggaagacagatacgggaatgccactgtggtagagaatactgagagaggctggcgggatcttatctttcagaggataagggcagtttttggtttcggaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008047 GO:0008150 GO:0030234 GO:0031072 GO:0032781 GO:0043085 GO:0043462 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0051879 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AHSA1 Aha1_N

Protein Analysis

207

Amino Acids

23.1

Weight (kDa)

9.28

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12050 AT3G12050
fragaria_vesca	FvH4_6g21990
malus_domestica	MD12G1055300.v1.1 MD14G1054700.v1.1
prunus_persica	Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1
pyrus_communis	pycom12g04830 pycom14g04520
rosa_chinensis	RchiOBHm_Chr3g0479291
rosa_laevigata	RLG00000023586
rosa_multiflora	Rmu_sc0015378.1_g000002 Rmu_sc0026945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402430
rosa_rugosa	Rorug03G0174200
rosa_samantha	Rh3AG225200 Rh3BG257700 Rh3CG253400 Rh3DG249600
rosa_wichuraiana	Rw3G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	143, 146, 574
AclWI	GGATC	1 cut(s)	585
AcoI	YGGCCR	2 cut(s)	6, 75
AcsI	RAATTY	2 cut(s)	373, 618
AfiI	CCNNNNNNNGG	2 cut(s)	204, 479
AgeI	ACCGGT	1 cut(s)	365
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	3 cut(s)	240, 382, 499
AluI	AGCT	3 cut(s)	240, 382, 499
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	585
AoxI	GGCC	6 cut(s)	6, 71, 75, 87, 93, 428
ApeKI	GCWGC	2 cut(s)	240, 382
ApoI	RAATTY	2 cut(s)	373, 618
AsiGI	ACCGGT	1 cut(s)	365
AspLEI	GCGC	2 cut(s)	64, 109
AspS9I	GGNCC	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	4 cut(s)	160, 193, 373, 463
AxyI	CCTNAGG	1 cut(s)	519
BalI	TGGCCA	1 cut(s)	8
BbsI	GAAGAC	2 cut(s)	119, 531
BbvI	GCAGC	2 cut(s)	227, 369
BccI	CCATC	4 cut(s)	265, 279, 347, 428
BciT130I	CCWGG	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	188
BfmI	CTRYAG	2 cut(s)	241, 383
BisI	GCNGC	3 cut(s)	144, 241, 383
BlsI	GCNGC	3 cut(s)	145, 242, 384
Bme1390I	CCNGG	2 cut(s)	139, 480
BmgT120I	GGNCC	1 cut(s)	71
BmrFI	CCNGG	2 cut(s)	139, 480
BpiI	GAAGAC	2 cut(s)	119, 531
BpuMI	CCSGG	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	4 cut(s)	9, 78, 90, 138
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 479
Bse118I	RCCGGY	2 cut(s)	73, 365
Bse21I	CCTNAGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	4 cut(s)	9, 78, 90, 138
BseGI	GGATG	3 cut(s)	88, 280, 517
BseLI	CCNNNNNNNGG	2 cut(s)	204, 479
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	4 cut(s)	219, 314, 510, 552
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	2 cut(s)	227, 369
BsgI	GTGCAG	2 cut(s)	71, 425
BshFI	GGCC	6 cut(s)	8, 73, 77, 89, 95, 430
BshTI	ACCGGT	1 cut(s)	365
BsiSI	CCGG	3 cut(s)	74, 138, 366
BslI	CCNNNNNNNGG	2 cut(s)	204, 479
BsmAI	GTCTC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	6 cut(s)	8, 73, 77, 89, 95, 430
Bso31I	GGTCTC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	577
BspACI	CCGC	3 cut(s)	143, 146, 574
BspANI	GGCC	6 cut(s)	8, 73, 77, 89, 95, 430
BspCNI	CTCAG	4 cut(s)	220, 313, 511, 553
BspMAI	CTGCAG	2 cut(s)	245, 387
BspPI	GGATC	1 cut(s)	585
BspTNI	GGTCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	2 cut(s)	73, 365
BssAI	RCCGGY	2 cut(s)	73, 365
BssECI	CCNNGG	4 cut(s)	9, 78, 90, 138
BssMI	GATC	1 cut(s)	577
BssT1I	CCWWGG	2 cut(s)	9, 78
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	2 cut(s)	490, 547
BstC8I	GCNNGC	2 cut(s)	75, 572
BstDEI	CTNAG	5 cut(s)	228, 300, 312, 519, 561
BstEII	GGTNACC	1 cut(s)	361
BstF5I	GGATG	3 cut(s)	88, 280, 517
BstHHI	GCGC	2 cut(s)	64, 109
BstKTI	GATC	1 cut(s)	580
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	577
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	480
BstPI	GGTNACC	1 cut(s)	361
BstSCI	CCNGG	2 cut(s)	137, 478
BstSFI	CTRYAG	2 cut(s)	241, 383
BstV1I	GCAGC	2 cut(s)	227, 369
BstV2I	GAAGAC	2 cut(s)	119, 531
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
Bsu36I	CCTNAGG	1 cut(s)	519
BsuRI	GGCC	6 cut(s)	8, 73, 77, 89, 95, 430
BtsCI	GGATG	3 cut(s)	88, 280, 517
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	2 cut(s)	75, 572
CfoI	GCGC	2 cut(s)	64, 109
Cfr10I	RCCGGY	2 cut(s)	73, 365
Cfr13I	GGNCC	1 cut(s)	71
CsiI	ACCWGGT	1 cut(s)	478
CspAI	ACCGGT	1 cut(s)	365
CviAII	CATG	1 cut(s)	506
DdeI	CTNAG	5 cut(s)	228, 300, 312, 519, 561
DpnI	GATC	1 cut(s)	579
DpnII	GATC	1 cut(s)	577
EaeI	YGGCCR	2 cut(s)	6, 75
Eco130I	CCWWGG	2 cut(s)	9, 78
Eco31I	GGTCTC	1 cut(s)	188
Eco81I	CCTNAGG	1 cut(s)	519
Eco91I	GGTNACC	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	2 cut(s)	9, 78
ErhI	CCWWGG	2 cut(s)	9, 78
FaeI	CATG	1 cut(s)	509
FaiI	YATR	5 cut(s)	48, 59, 224, 261, 507
FatI	CATG	1 cut(s)	505
FauI	CCCGC	1 cut(s)	567
Fnu4HI	GCNGC	3 cut(s)	144, 241, 383
FokI	GGATG	3 cut(s)	95, 287, 524
FseI	GGCCGGCC	1 cut(s)	77
Fsp4HI	GCNGC	3 cut(s)	144, 241, 383
GlaI	GCGC	2 cut(s)	63, 108
GluI	GCNGC	3 cut(s)	144, 241, 383
HaeIII	GGCC	6 cut(s)	8, 73, 77, 89, 95, 430
HapII	CCGG	3 cut(s)	74, 138, 366
HhaI	GCGC	2 cut(s)	64, 109
Hin1II	CATG	1 cut(s)	509
Hin6I	GCGC	2 cut(s)	62, 107
HinP1I	GCGC	2 cut(s)	62, 107
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	3 cut(s)	74, 138, 366
HphI	GGTGA	4 cut(s)	160, 193, 373, 463
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	3 cut(s)	303, 591, 617
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	4 cut(s)	148, 169, 184, 283
HpyCH4III	ACNGT	2 cut(s)	490, 547
HpyCH4V	TGCA	4 cut(s)	52, 243, 385, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	5 cut(s)	228, 300, 312, 519, 561
Hsp92II	CATG	1 cut(s)	509
HspAI	GCGC	2 cut(s)	62, 107
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	577
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	2 cut(s)	227, 369
MabI	ACCWGGT	1 cut(s)	478
MaeIII	GTNAC	2 cut(s)	361, 451
MalI	GATC	1 cut(s)	579
MboI	GATC	1 cut(s)	577
MboII	GAAGA	7 cut(s)	112, 124, 163, 184, 196, 199, 536
MflI	RGATCY	1 cut(s)	577
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	5 cut(s)	124, 253, 373, 409, 618
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	9 cut(s)	79, 85, 151, 172, 319, 326, 514, 560, 585
Mox20I	TGGCCA	1 cut(s)	8
MroNI	GCCGGC	1 cut(s)	73
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	2 cut(s)	210, 622
MslI	CAYNNNNRTG	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	8
MspI	CCGG	3 cut(s)	74, 138, 366
MspR9I	CCNGG	2 cut(s)	139, 480
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	1 cut(s)	70
NaeI	GCCGGC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	1 cut(s)	577
NgoMIV	GCCGGC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	509
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	2 cut(s)	361, 451
PctI	GAATGC	1 cut(s)	544
PdiI	GCCGGC	1 cut(s)	75
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	145, 242, 384
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	478
PspEI	GGTNACC	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	478
PspPI	GGNCC	1 cut(s)	71
PstI	CTGCAG	2 cut(s)	245, 387
PsuI	RGATCY	1 cut(s)	577
RigI	GGCCGGCC	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	2 cut(s)	210, 622
SatI	GCNGC	3 cut(s)	144, 241, 383
Sau3AI	GATC	1 cut(s)	577
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	2 cut(s)	139, 480
SetI	ASST	9 cut(s)	39, 162, 183, 242, 330, 384, 453, 481, 501
SexAI	ACCWGGT	1 cut(s)	478
SfcI	CTRYAG	2 cut(s)	241, 383
SmiMI	CAYNNNNRTG	1 cut(s)	510
Sse9I	AATT	5 cut(s)	124, 253, 373, 409, 618
SsiI	CCGC	3 cut(s)	143, 146, 574
StyD4I	CCNGG	2 cut(s)	137, 478
StyI	CCWWGG	2 cut(s)	9, 78
TaaI	ACNGT	2 cut(s)	490, 547
TaqI	TCGA	2 cut(s)	128, 351
TasI	AATT	5 cut(s)	124, 253, 373, 409, 618
TauI	GCSGC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	210, 622
Tru9I	TTAA	2 cut(s)	210, 622
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	2 cut(s)	361, 451
TseI	GCWGC	2 cut(s)	240, 382
Tsp45I	GTSAC	2 cut(s)	361, 451
TspRI	CASTG	1 cut(s)	550
XapI	RAATTY	2 cut(s)	373, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.