Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009966

Physical Location & Seq

Genomic Coordinates Reverse (-)

11568826 .. 11571781

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G080100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCGAAGTATGGCGAGGGCCACAAGCGATGGATCGTGGAGGACAGGCCAGACGGAGCCAACGTCCACAACTGGCACTGGGCCGAGACCGATTGCCTCGGTTGGTCACGCGACCTCCTCACCAAGCTCCTCAACAACCTCACAGTTCTCGATGGCGAAGGCAACATTCATCTCAAGACCAAGACCGTCGACAAGGTCGACGGCGAGGCCTACGTCAACATCCGGAAGGGCAAGATCATCCCCGGCTACGAAATCAGCCTCAGTCTTTCCTGGGAAGGCGAGGCCAAAGACGCCGATGGAAAATCGCTGCTTAAGGTCGATGGGGTGGTGGAGATTCCTTATATTGCGGACGAGAACGCTGATGAGGACCCGGAGGTCAAGATTTCAGTTAAGGATGAGGGGCCCATTGGGAAGAGGCTTAAAGAGGCCATGTTGGCTAAAGGGAAGCCTTTGATTTTGGAGAAGGTTAGGGTTTATGTAGAGAGTATTGCGAAAGGTGGGCCCGTTAAGGACGAAGTAGAGGCTAAGAAGATTGCCACAAAGAGTAATTCGACGGCGGCAGTAGCGGCTGCTGCGGGGGAGGTGAAGAAGGAGGTGGTGGTGGAGAAGAAGGAGGTGAAGAAGAAGAAGGAGAGTAAAAAAGGGTTCAAGACGATTAGTATGACTGAGAAGTTTAGTTGCAGAGCGAAAGATTTGTTTGAGATTTTGATGGATGAGAATAGATGGAAGGGTTTTAGTCAGAGCAATGCCAAGATAAGCAAGGAGGTTGGTGGGCAGATTAGCATTTTCGATGGGTCGGTGACGGGTACCAATTTGGAGTTGCAGAATGGGAGTTTGATTGTGCAGAAATGGAGATTTGGGAGCTGGCCTGATGGCATTGATTCAACGGTGAGGCTTACACTTGAAGAGCCTGAACCTGGGCTCACTGTTGTCAAGCTAACACATTCGGATATTCCTGAGGAAGACAGATATGGGAATGCGACTGTGGTGGAGAATACGGAGAGAGGATGGCGGGATCTTATTTTCCAGAGGATACGGGCAGTTTTTGGTTTTGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008047 GO:0008150 GO:0030234 GO:0031072 GO:0032781 GO:0043085 GO:0043462 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0051879 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AHSA1 Aha1_N

Protein Analysis

354

Amino Acids

39.22

Weight (kDa)

6.31

Isoelectric Point (pI)

22.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12050 AT3G12050
fragaria_vesca	FvH4_6g21990
malus_domestica	MD12G1055300.v1.1 MD14G1054700.v1.1
prunus_persica	Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1 Prupe.7G080100_v2.0.a1
pyrus_communis	pycom12g04830 pycom14g04520
rosa_chinensis	RchiOBHm_Chr3g0479291
rosa_laevigata	RLG00000023586
rosa_multiflora	Rmu_sc0015378.1_g000002 Rmu_sc0026945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402430
rosa_rugosa	Rorug03G0174200
rosa_samantha	Rh3AG225200 Rh3BG257700 Rh3CG253400 Rh3DG249600
rosa_wichuraiana	Rw3G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
Acc65I	GGTACC	1 cut(s)	806
AccB1I	GGYRCC	1 cut(s)	806
AccI	GTMKAC	2 cut(s)	189, 198
AccII	CGCG	1 cut(s)	111
AccIII	TCCGGA	1 cut(s)	222
AciI	CCGC	5 cut(s)	347, 557, 566, 575, 1012
AclWI	GGATC	2 cut(s)	41, 1023
AcsI	RAATTY	1 cut(s)	1056
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	1 cut(s)	808
AfiI	CCNNNNNNNGG	1 cut(s)	917
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	3 cut(s)	649, 885, 905
AjnI	CCWGG	2 cut(s)	269, 916
AluBI	AGCT	3 cut(s)	127, 864, 937
AluI	AGCT	3 cut(s)	127, 864, 937
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	2 cut(s)	41, 1023
Aor13HI	TCCGGA	1 cut(s)	222
AoxI	GGCC	9 cut(s)	19, 47, 81, 207, 282, 401, 426, 500, 866
ApaI	GGGCCC	2 cut(s)	405, 504
ApeKI	GCWGC	3 cut(s)	307, 569, 572
ApoI	RAATTY	1 cut(s)	1056
Asp718I	GGTACC	1 cut(s)	806
AspS9I	GGNCC	7 cut(s)	19, 81, 367, 401, 402, 500, 501
AsuC2I	CCSGG	2 cut(s)	243, 371
AsuHPI	GGTGA	5 cut(s)	112, 595, 628, 811, 901
AvaII	GGWCC	1 cut(s)	367
AxyI	CCTNAGG	1 cut(s)	957
BaeGI	GKGCMC	2 cut(s)	405, 504
BanI	GGYRCC	1 cut(s)	806
BanII	GRGCYC	3 cut(s)	405, 504, 924
BbsI	GAAGAC	1 cut(s)	969
BbvI	GCAGC	3 cut(s)	294, 556, 559
BccI	CCATC	9 cut(s)	24, 146, 290, 314, 703, 717, 785, 866, 1002
BceAI	ACGGC	2 cut(s)	217, 570
BciT130I	CCWGG	2 cut(s)	271, 918
BciVI	GTATCC	1 cut(s)	1026
BcnI	CCSGG	2 cut(s)	243, 371
BcoDI	GTCTC	1 cut(s)	80
BfrI	CTTAAG	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	1026
BglI	GCCNNNNNGGC	1 cut(s)	434
BisI	GCNGC	5 cut(s)	308, 558, 567, 570, 573
BlsI	GCNGC	5 cut(s)	309, 559, 568, 571, 574
Bme1390I	CCNGG	4 cut(s)	243, 271, 371, 918
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	7 cut(s)	19, 81, 367, 401, 402, 500, 501
BmiI	GGNNCC	6 cut(s)	58, 369, 402, 403, 502, 808
BmrFI	CCNGG	4 cut(s)	243, 271, 371, 918
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	969
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	2 cut(s)	243, 371
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	4 cut(s)	97, 241, 270, 917
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	917
Bse1I	ACTGG	2 cut(s)	77, 83
Bse21I	CCTNAGG	1 cut(s)	957
Bse3DI	GCAATG	1 cut(s)	751
BseAI	TCCGGA	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	271, 918
BseDI	CCNNGG	4 cut(s)	97, 241, 270, 917
BseGI	GGATG	5 cut(s)	219, 237, 400, 718, 1013
BseLI	CCNNNNNNNGG	1 cut(s)	917
BseMI	GCAATG	1 cut(s)	751
BseMII	CTCAG	3 cut(s)	274, 657, 948
BseNI	ACTGG	2 cut(s)	77, 83
BseRI	GAGGAG	2 cut(s)	107, 119
BseSI	GKGCMC	2 cut(s)	405, 504
BseXI	GCAGC	3 cut(s)	294, 556, 559
BsgI	GTGCAG	1 cut(s)	863
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	9 cut(s)	21, 49, 83, 209, 284, 403, 428, 502, 868
BshNI	GGYRCC	1 cut(s)	806
BsiSI	CCGG	3 cut(s)	223, 243, 371
BslI	CCNNNNNNNGG	1 cut(s)	917
BsmAI	GTCTC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	982
BsnI	GGCC	9 cut(s)	21, 49, 83, 209, 284, 403, 428, 502, 868
Bso31I	GGTCTC	1 cut(s)	80
Bsp120I	GGGCCC	2 cut(s)	401, 500
Bsp1286I	GDGCHC	3 cut(s)	405, 504, 924
Bsp13I	TCCGGA	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	33, 234, 1015
BspACI	CCGC	5 cut(s)	347, 557, 566, 575, 1012
BspANI	GGCC	9 cut(s)	21, 49, 83, 209, 284, 403, 428, 502, 868
BspCNI	CTCAG	3 cut(s)	273, 658, 949
BspEI	TCCGGA	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	6 cut(s)	58, 369, 402, 403, 502, 808
BspPI	GGATC	2 cut(s)	41, 1023
BspQI	GCTCTTC	1 cut(s)	900
BspT107I	GGYRCC	1 cut(s)	806
BspTI	CTTAAG	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	751
BsrI	ACTGG	2 cut(s)	77, 83
BssECI	CCNNGG	4 cut(s)	97, 241, 270, 917
BssMI	GATC	3 cut(s)	33, 234, 1015
BssNI	GRCGYC	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	271, 918
Bst4CI	ACNGT	5 cut(s)	145, 187, 889, 928, 985
Bst6I	CTCTTC	2 cut(s)	407, 900
BstACI	GRCGYC	1 cut(s)	291
BstAFI	CTTAAG	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	866
BstDEI	CTNAG	4 cut(s)	260, 525, 666, 957
BstF5I	GGATG	5 cut(s)	219, 237, 400, 718, 1013
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	3 cut(s)	36, 237, 1018
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	3 cut(s)	33, 234, 1015
BstMWI	GCNNNNNNNGC	5 cut(s)	290, 434, 563, 566, 572
BstNI	CCWGG	2 cut(s)	271, 918
BstSCI	CCNGG	4 cut(s)	241, 269, 369, 916
BstSLI	GKGCMC	2 cut(s)	405, 504
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	294, 556, 559
BstV2I	GAAGAC	1 cut(s)	969
BstX2I	RGATCY	1 cut(s)	1015
BstYI	RGATCY	1 cut(s)	1015
Bsu36I	CCTNAGG	1 cut(s)	957
BsuI	GTATCC	1 cut(s)	1026
BsuRI	GGCC	9 cut(s)	21, 49, 83, 209, 284, 403, 428, 502, 868
BtgZI	GCGATG	1 cut(s)	43
BtsCI	GGATG	5 cut(s)	219, 237, 400, 718, 1013
BtsIMutI	CAGTG	2 cut(s)	76, 924
Cac8I	GCNNGC	1 cut(s)	866
Cfr13I	GGNCC	7 cut(s)	19, 81, 367, 401, 402, 500, 501
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	807
CviAII	CATG	1 cut(s)	430
CviQI	GTAC	1 cut(s)	807
DdeI	CTNAG	4 cut(s)	260, 525, 666, 957
DpnI	GATC	3 cut(s)	35, 236, 1017
DpnII	GATC	3 cut(s)	33, 234, 1015
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
Eam1104I	CTCTTC	2 cut(s)	407, 900
EarI	CTCTTC	2 cut(s)	407, 900
Eco147I	AGGCCT	1 cut(s)	209
Eco24I	GRGCYC	3 cut(s)	405, 504, 924
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	367
Eco81I	CCTNAGG	1 cut(s)	957
EcoO109I	RGGNCCY	2 cut(s)	367, 401
EcoRII	CCWGG	2 cut(s)	269, 916
EcoT38I	GRGCYC	3 cut(s)	405, 504, 924
FaeI	CATG	1 cut(s)	433
FaiI	YATR	6 cut(s)	12, 342, 431, 477, 662, 972
FatI	CATG	1 cut(s)	429
FauI	CCCGC	2 cut(s)	568, 1005
FblI	GTMKAC	2 cut(s)	189, 198
Fnu4HI	GCNGC	5 cut(s)	308, 558, 567, 570, 573
FokI	GGATG	5 cut(s)	206, 224, 407, 725, 1020
FriOI	GRGCYC	3 cut(s)	405, 504, 924
Fsp4HI	GCNGC	5 cut(s)	308, 558, 567, 570, 573
GluI	GCNGC	5 cut(s)	308, 558, 567, 570, 573
HaeIII	GGCC	9 cut(s)	21, 49, 83, 209, 284, 403, 428, 502, 868
HapII	CCGG	3 cut(s)	223, 243, 371
HgaI	GACGC	1 cut(s)	299
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	1 cut(s)	433
HincII	GTYRAC	3 cut(s)	190, 199, 217
HindII	GTYRAC	3 cut(s)	190, 199, 217
HinfI	GANTC	2 cut(s)	334, 881
HpaII	CCGG	3 cut(s)	223, 243, 371
HphI	GGTGA	5 cut(s)	112, 595, 628, 811, 901
Hpy166II	GTNNAC	4 cut(s)	67, 190, 199, 217
Hpy188I	TCNGA	2 cut(s)	741, 949
Hpy188III	TCNNGA	7 cut(s)	149, 175, 223, 379, 649, 956, 1027
Hpy8I	GTNNAC	4 cut(s)	67, 190, 199, 217
Hpy99I	CGWCG	3 cut(s)	191, 203, 556
HpyAV	CCTTC	8 cut(s)	152, 220, 269, 457, 583, 604, 622, 721
HpyCH4III	ACNGT	5 cut(s)	145, 187, 889, 928, 985
HpyCH4IV	ACGT	2 cut(s)	63, 213
HpyCH4V	TGCA	3 cut(s)	681, 823, 844
HpyF10VI	GCNNNNNNNGC	5 cut(s)	290, 434, 563, 566, 572
HpyF3I	CTNAG	4 cut(s)	260, 525, 666, 957
HpySE526I	ACGT	2 cut(s)	63, 213
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	433
Kpn2I	TCCGGA	1 cut(s)	222
KpnI	GGTACC	1 cut(s)	810
Kzo9I	GATC	3 cut(s)	33, 234, 1015
LguI	GCTCTTC	1 cut(s)	900
LmnI	GCTCC	3 cut(s)	56, 132, 861
Lsp1109I	GCAGC	3 cut(s)	294, 556, 559
MaeII	ACGT	2 cut(s)	63, 213
MaeIII	GTNAC	2 cut(s)	105, 799
MalI	GATC	3 cut(s)	35, 236, 1017
MboI	GATC	3 cut(s)	33, 234, 1015
MboII	GAAGA	9 cut(s)	424, 541, 598, 619, 631, 634, 637, 917, 974
MflI	RGATCY	1 cut(s)	1015
MhlI	GDGCHC	3 cut(s)	405, 504, 924
MluCI	AATT	3 cut(s)	547, 811, 1056
MroI	TCCGGA	1 cut(s)	222
MseI	TTAA	4 cut(s)	312, 390, 420, 507
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	3 cut(s)	223, 243, 371
MspR9I	CCNGG	4 cut(s)	243, 271, 371, 918
Mva1269I	GAATGC	1 cut(s)	982
MvaI	CCWGG	2 cut(s)	271, 918
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	5 cut(s)	290, 434, 563, 566, 572
NciI	CCSGG	2 cut(s)	243, 371
NdeII	GATC	3 cut(s)	33, 234, 1015
NlaIII	CATG	1 cut(s)	433
NlaIV	GGNNCC	6 cut(s)	58, 369, 402, 403, 502, 808
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	105, 799
PceI	AGGCCT	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	900
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 195
PctI	GAATGC	1 cut(s)	982
PfeI	GAWTC	2 cut(s)	334, 881
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	5 cut(s)	309, 559, 568, 571, 574
PpuMI	RGGWCCY	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	269, 916
PspGI	CCWGG	2 cut(s)	269, 916
PspN4I	GGNNCC	6 cut(s)	58, 369, 402, 403, 502, 808
PspOMI	GGGCCC	2 cut(s)	401, 500
PspPI	GGNCC	7 cut(s)	19, 81, 367, 401, 402, 500, 501
PspPPI	RGGWCCY	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	1015
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	808
RsaNI	GTAC	1 cut(s)	807
SalI	GTCGAC	2 cut(s)	188, 197
SapI	GCTCTTC	1 cut(s)	900
SaqAI	TTAA	4 cut(s)	312, 390, 420, 507
SatI	GCNGC	5 cut(s)	308, 558, 567, 570, 573
Sau3AI	GATC	3 cut(s)	33, 234, 1015
Sau96I	GGNCC	7 cut(s)	19, 81, 367, 401, 402, 500, 501
ScrFI	CCNGG	4 cut(s)	243, 271, 371, 918
SduI	GDGCHC	3 cut(s)	405, 504, 924
SinI	GGWCC	1 cut(s)	367
SmlI	CTYRAG	2 cut(s)	173, 311
SmoI	CTYRAG	2 cut(s)	173, 311
Sse9I	AATT	3 cut(s)	547, 811, 1056
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	5 cut(s)	347, 557, 566, 575, 1012
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	4 cut(s)	241, 269, 369, 916
TaaI	ACNGT	5 cut(s)	145, 187, 889, 928, 985
TaiI	ACGT	2 cut(s)	66, 216
TaqI	TCGA	6 cut(s)	150, 189, 198, 318, 551, 789
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	3 cut(s)	547, 811, 1056
TauI	GCSGC	2 cut(s)	560, 569
TfiI	GAWTC	2 cut(s)	334, 881
Tru1I	TTAA	4 cut(s)	312, 390, 420, 507
Tru9I	TTAA	4 cut(s)	312, 390, 420, 507
TscAI	CASTG	2 cut(s)	83, 931
TseFI	GTSAC	2 cut(s)	105, 799
TseI	GCWGC	3 cut(s)	307, 569, 572
Tsp45I	GTSAC	2 cut(s)	105, 799
TspDTI	ATGAA	1 cut(s)	158
TspGWI	ACGGA	2 cut(s)	69, 1013
TspRI	CASTG	2 cut(s)	83, 931
Tth111I	GACNNNGTC	1 cut(s)	194
Vha464I	CTTAAG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	1 cut(s)	1056
XmiI	GTMKAC	2 cut(s)	189, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.