Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015285

Physical Location & Seq

Genomic Coordinates Forward (+)

2399726 .. 2400349

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G07580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGAGTTTTGAGGAAAGCTCTGATTTGGAAGCTATACAGAGCCATCTCTTAGAAGACTTGTTGGTTTGTGATGGTTTCATGGGAGATTTTGACTTCGATGCTTCTTTTGTCTCAGGACTTTGGTGTATAGAACCACACGTTCCTAAACAAGAACCTGATTCTCCAGTTCTTGATCCGGATTCTTTCGTCAACGAGTTCTTGCAAGTGGAAGGGGAATCATCATCATCATCATCACCAGAGCTGAATTCATCGTCATCAACATATGAGACTGATCAGAGTGTGAAAAAGGCAGAGAGGTTCGAAGAAGAAGTAGATGCTAGACATTACCGAGGAGTGAGGCGAAGGCCGTGGGGGAAATTTGCAGCAGAGATTCGAGATCCAGCAAAGAAAGGATCAAGAATCTGGCTAGGAACATTTGAGAGTGATGTTGATGCTGCAAGAGCCTATGACTGTGCAGCTTTCAAGCTCCGGGGAAGAAAAGCCGTGCTCAACTTCCCTCTTGACGCCGGGAAATATGAAGCTCCAGCGAATTCAGGAAGGAAAAGGAAGAGAAGTGATGTGCATGAAGAGCTTCAAAGAACTCAGAGCAATTCATCTTCATCTTCCTGTGATGCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1904276 GO:1904277 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

207

Amino Acids

23.15

Weight (kDa)

4.84

Isoelectric Point (pI)

75.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	109 - 159	2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07580 AT5G61590
fragaria_vesca	FvH4_7g26940
malus_domestica	MD01G1177200.v1.1 MD07G1248700.v1.1
prunus_persica	Prupe.2G272500_v2.0.a1
pyrus_communis	pycom07g22210
rosa_chinensis	RchiOBHm_Chr1g0373641
rosa_laevigata	RLG00000026810
rosa_multiflora	Rmu_sc0013090.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284090
rosa_rugosa	Rorug01G0378700
rosa_samantha	Rh1AG388200 Rh1BG352500 Rh1CG365300
rosa_wichuraiana	Rw1G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	178
AclWI	GGATC	3 cut(s)	170, 374, 403
AcsI	RAATTY	3 cut(s)	247, 359, 532
AcyI	GRCGYC	1 cut(s)	507
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	2 cut(s)	466, 578
AluBI	AGCT	7 cut(s)	21, 35, 244, 461, 469, 524, 574
AluI	AGCT	7 cut(s)	21, 35, 244, 461, 469, 524, 574
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	2 cut(s)	118, 263
AlwI	GGATC	3 cut(s)	170, 374, 403
Aor13HI	TCCGGA	1 cut(s)	178
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	3 cut(s)	365, 437, 458
ApoI	RAATTY	3 cut(s)	247, 359, 532
Asp700I	GAANNNNTTC	1 cut(s)	573
AsuC2I	CCSGG	2 cut(s)	473, 511
AsuHPI	GGTGA	1 cut(s)	228
AsuII	TTCGAA	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	3 cut(s)	377, 424, 470
BccI	CCATC	2 cut(s)	54, 68
BceAI	ACGGC	2 cut(s)	334, 470
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	2 cut(s)	473, 511
BcoDI	GTCTC	2 cut(s)	118, 263
BfaI	CTAG	2 cut(s)	321, 410
BisI	GCNGC	3 cut(s)	366, 438, 459
BlsI	GCNGC	3 cut(s)	367, 439, 460
Bme1390I	CCNGG	2 cut(s)	473, 511
BmrFI	CCNGG	2 cut(s)	473, 511
BmsI	GCATC	4 cut(s)	91, 307, 424, 604
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	2 cut(s)	150, 510
Bpu14I	TTCGAA	1 cut(s)	303
BpuMI	CCSGG	2 cut(s)	473, 511
BsaHI	GRCGYC	1 cut(s)	507
BsaJI	CCNNGG	3 cut(s)	331, 350, 472
BsaWI	WCCGGW	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	167
BseAI	TCCGGA	1 cut(s)	178
BseDI	CCNNGG	3 cut(s)	331, 350, 472
BseMII	CTCAG	2 cut(s)	129, 599
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	3 cut(s)	377, 424, 470
BsgI	GTGCAG	1 cut(s)	477
BshFI	GGCC	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	3 cut(s)	179, 472, 510
BsmAI	GTCTC	2 cut(s)	118, 263
BsnI	GGCC	1 cut(s)	349
Bsp119I	TTCGAA	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp13I	TCCGGA	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	175, 274, 379, 395
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	2 cut(s)	128, 598
BspEI	TCCGGA	1 cut(s)	178
BspPI	GGATC	3 cut(s)	170, 374, 403
BspQI	GCTCTTC	1 cut(s)	564
BspT104I	TTCGAA	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	3 cut(s)	331, 350, 472
BssMI	GATC	4 cut(s)	175, 274, 379, 395
BssNI	GRCGYC	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	2 cut(s)	545, 564
BstACI	GRCGYC	1 cut(s)	507
BstBI	TTCGAA	1 cut(s)	303
BstDEI	CTNAG	3 cut(s)	52, 115, 585
BstDSI	CCRYGG	1 cut(s)	350
BstKTI	GATC	4 cut(s)	178, 277, 382, 398
BstMAI	GTCTC	2 cut(s)	118, 263
BstMBI	GATC	4 cut(s)	175, 274, 379, 395
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 571
BstSCI	CCNGG	2 cut(s)	471, 509
BstV1I	GCAGC	3 cut(s)	377, 424, 470
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	349
BtgI	CCRYGG	1 cut(s)	350
CseI	GACGC	1 cut(s)	515
CviAII	CATG	2 cut(s)	82, 566
DdeI	CTNAG	3 cut(s)	52, 115, 585
DpnI	GATC	4 cut(s)	177, 276, 381, 397
DpnII	GATC	4 cut(s)	175, 274, 379, 395
Eam1104I	CTCTTC	2 cut(s)	545, 564
EarI	CTCTTC	2 cut(s)	545, 564
EcoRI	GAATTC	2 cut(s)	247, 532
EcoT22I	ATGCAT	1 cut(s)	619
FaeI	CATG	2 cut(s)	85, 569
FaiI	YATR	8 cut(s)	38, 83, 131, 265, 267, 450, 519, 567
FatI	CATG	2 cut(s)	81, 565
FauNDI	CATATG	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	366, 438, 459
Fsp4HI	GCNGC	3 cut(s)	366, 438, 459
FspBI	CTAG	2 cut(s)	321, 410
GluI	GCNGC	3 cut(s)	366, 438, 459
GsuI	CTGGAG	2 cut(s)	150, 510
HaeIII	GGCC	1 cut(s)	349
HapII	CCGG	3 cut(s)	179, 472, 510
HgaI	GACGC	1 cut(s)	515
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	2 cut(s)	85, 569
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	5 cut(s)	161, 182, 218, 373, 402
HpaII	CCGG	3 cut(s)	179, 472, 510
HphI	GGTGA	1 cut(s)	228
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	25, 279, 588
Hpy188III	TCNNGA	7 cut(s)	117, 173, 179, 377, 399, 503, 537
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	3 cut(s)	206, 339, 534
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	6 cut(s)	205, 365, 440, 458, 565, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 571
HpyF3I	CTNAG	3 cut(s)	52, 115, 585
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	2 cut(s)	85, 569
Kpn2I	TCCGGA	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	175, 274, 379, 395
LguI	GCTCTTC	1 cut(s)	564
LmnI	GCTCC	2 cut(s)	474, 529
Lsp1109I	GCAGC	3 cut(s)	377, 424, 470
LweI	GCATC	4 cut(s)	91, 307, 424, 604
MaeI	CTAG	2 cut(s)	321, 410
MaeII	ACGT	1 cut(s)	141
MalI	GATC	4 cut(s)	177, 276, 381, 397
MboI	GATC	4 cut(s)	175, 274, 379, 395
MboII	GAAGA	8 cut(s)	68, 317, 320, 489, 562, 581, 591, 597
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	4 cut(s)	247, 359, 532, 592
MnlI	CCTC	5 cut(s)	7, 291, 326, 333, 510
Mph1103I	ATGCAT	1 cut(s)	619
MroI	TCCGGA	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	573
MspI	CCGG	3 cut(s)	179, 472, 510
MspR9I	CCNGG	2 cut(s)	473, 511
MwoI	GCNNNNNNNGC	2 cut(s)	443, 571
NciI	CCSGG	2 cut(s)	473, 511
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	4 cut(s)	175, 274, 379, 395
NlaIII	CATG	2 cut(s)	85, 569
NsiI	ATGCAT	1 cut(s)	619
NspV	TTCGAA	1 cut(s)	303
PciSI	GCTCTTC	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	5 cut(s)	161, 182, 218, 373, 402
PkrI	GCNGC	3 cut(s)	367, 439, 460
PsuI	RGATCY	1 cut(s)	379
SapI	GCTCTTC	1 cut(s)	564
SatI	GCNGC	3 cut(s)	366, 438, 459
Sau3AI	GATC	4 cut(s)	175, 274, 379, 395
ScrFI	CCNGG	2 cut(s)	473, 511
SduI	GDGCHC	1 cut(s)	492
SfaNI	GCATC	4 cut(s)	91, 307, 424, 604
SfuI	TTCGAA	1 cut(s)	303
Sse9I	AATT	4 cut(s)	247, 359, 532, 592
SspMI	CTAG	2 cut(s)	321, 410
StyD4I	CCNGG	2 cut(s)	471, 509
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	3 cut(s)	99, 303, 376
TasI	AATT	4 cut(s)	247, 359, 532, 592
TfiI	GAWTC	5 cut(s)	161, 182, 218, 373, 402
TseI	GCWGC	3 cut(s)	365, 437, 458
TspDTI	ATGAA	6 cut(s)	70, 240, 534, 582, 585, 591
XapI	RAATTY	3 cut(s)	247, 359, 532
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	2 cut(s)	321, 410
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.