Rmu_sc0013090.1_g000002

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013090.1
OG0015285
Physical Location & Seq
Reverse (-)
10980 .. 11663
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013090.1_g000002.1.cds

Sequence Viewer

Length: 684 bp
atggcagcaacccaagaacaagatgagtcaactctcgaactcatacgccaacatctcttaggagacttcaccttcacagacagcttcatcaccaatctcaactacgaacagagcccagaaatctcctacttccaacccatcaaatccgagtactccatatccgaatccgagtccgcctcccccgtttcaaactaccgaaacccgaaacccgaacccatagccgaagaagaacccatgagctccaagagcgagcccaagagaaagtcgagttcttccaactccagctcatcgactggcgaggccgccaggcattacaggggagtccggagaaggccgtggggcaagtttgcggcggagatccgtgacccggcccggaaggggagccgggtctggctggggacgtttgacactgatgtggatgctgctaaggcctatgattttgctgcattcaagctcaggggaaggaaagctatactgaattttccgctggaggccggagagtccgacccgccaagtaatacgggtcggaaaaggaggaagtcagtgaagcaagaggaggaggaggaggaggaggaggaggcgccggctccggaggcggaagagatggaggttcaaagttgggtagattgggatggagaagatgcccgaaggctcgtctggtttctcacgatcatctactgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

227

Amino Acids

25.87

Weight (kDa)

4.87

Isoelectric Point (pI)

80.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07580 AT5G61590
fragaria_vesca FvH4_7g26940
malus_domestica MD01G1177200.v1.1 MD07G1248700.v1.1
prunus_persica Prupe.2G272500_v2.0.a1
pyrus_communis pycom07g22210
rosa_chinensis RchiOBHm_Chr1g0373641
rosa_laevigata RLG00000026810
rosa_multiflora Rmu_sc0013090.1_g000002
rosa_roxburghii Rroxscaffold_4G00284090
rosa_rugosa Rorug01G0378700
rosa_samantha Rh1AG388200 Rh1BG352500 Rh1CG365300
rosa_wichuraiana Rw1G034710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 580
AccIII TCCGGA 2 cut(s) 324, 589
AciI CCGC 7 cut(s) 174, 303, 350, 353, 485, 509, 596
AclWI GGATC 1 cut(s) 352
AcsI RAATTY 1 cut(s) 478
AcyI GRCGYC 1 cut(s) 581
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 367, 378
AgsI TTSAA 3 cut(s) 189, 451, 614
AjnI CCWGG 1 cut(s) 305
AleI CACNNNNGTG 1 cut(s) 413
AluBI AGCT 5 cut(s) 84, 240, 285, 454, 470
AluI AGCT 5 cut(s) 84, 240, 285, 454, 470
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 352
Aor13HI TCCGGA 2 cut(s) 324, 589
AoxI GGCC 5 cut(s) 300, 332, 369, 429, 492
ApeKI GCWGC 3 cut(s) 5, 422, 443
ApoI RAATTY 1 cut(s) 478
AspLEI GCGC 1 cut(s) 583
AspS9I GGNCC 1 cut(s) 370
AsuC2I CCSGG 3 cut(s) 368, 373, 386
AsuHPI GGTGA 2 cut(s) 61, 82
BanI GGYRCC 1 cut(s) 580
BanII GRGCYC 3 cut(s) 116, 242, 255
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 3 cut(s) 17, 409, 430
BccI CCATC 3 cut(s) 146, 598, 626
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 307
BcnI CCSGG 3 cut(s) 368, 373, 386
BcoDI GTCTC 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 584
BisI GCNGC 5 cut(s) 6, 303, 351, 423, 444
BlsI GCNGC 5 cut(s) 7, 304, 352, 424, 445
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 4 cut(s) 307, 368, 373, 386
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 3 cut(s) 383, 582, 588
BmrFI CCNGG 4 cut(s) 307, 368, 373, 386
BmsI GCATC 2 cut(s) 409, 631
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 2 cut(s) 265, 509
Bpu10I CCTNAGC 2 cut(s) 426, 455
BpuMI CCSGG 3 cut(s) 368, 373, 386
BsaHI GRCGYC 1 cut(s) 581
BsaJI CCNNGG 1 cut(s) 335
BsaWI WCCGGW 2 cut(s) 324, 589
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 378
Bse118I RCCGGY 1 cut(s) 583
Bse1I ACTGG 1 cut(s) 298
BseAI TCCGGA 2 cut(s) 324, 589
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 2 cut(s) 424, 637
BseLI CCNNNNNNNGG 2 cut(s) 367, 378
BseMII CTCAG 1 cut(s) 469
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 8 cut(s) 569, 572, 575, 578, 581, 584, 587, 590
BseXI GCAGC 3 cut(s) 17, 409, 430
BseYI CCCAGC 1 cut(s) 394
BshFI GGCC 5 cut(s) 302, 334, 371, 431, 494
BshNI GGYRCC 1 cut(s) 580
BsiHKAI GWGCWC 1 cut(s) 242
BsiSI CCGG 7 cut(s) 325, 368, 373, 385, 495, 584, 590
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 2 cut(s) 367, 378
BsmAI GTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 412
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 5 cut(s) 302, 334, 371, 431, 494
Bsp1286I GDGCHC 3 cut(s) 116, 242, 255
Bsp13I TCCGGA 2 cut(s) 324, 589
Bsp143I GATC 2 cut(s) 357, 669
BspACI CCGC 7 cut(s) 174, 303, 350, 353, 485, 509, 596
BspANI GGCC 5 cut(s) 302, 334, 371, 431, 494
BspCNI CTCAG 1 cut(s) 468
BspEI TCCGGA 2 cut(s) 324, 589
BspLI GGNNCC 3 cut(s) 383, 582, 588
BspPI GGATC 1 cut(s) 352
BspT107I GGYRCC 1 cut(s) 580
BsrFI RCCGGY 1 cut(s) 583
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 583
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 2 cut(s) 357, 669
BssNI GRCGYC 1 cut(s) 581
Bst2UI CCWGG 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 594
BstACI GRCGYC 1 cut(s) 581
BstC8I GCNNGC 2 cut(s) 251, 585
BstDEI CTNAG 3 cut(s) 58, 426, 455
BstDSI CCRYGG 1 cut(s) 335
BstF5I GGATG 2 cut(s) 424, 637
BstH2I RGCGCY 1 cut(s) 584
BstHHI GCGC 1 cut(s) 583
BstKTI GATC 2 cut(s) 360, 672
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 2 cut(s) 357, 669
BstMWI GCNNNNNNNGC 3 cut(s) 246, 428, 593
BstNI CCWGG 1 cut(s) 307
BstSCI CCNGG 4 cut(s) 305, 366, 371, 384
BstV1I GCAGC 3 cut(s) 17, 409, 430
BstX2I RGATCY 1 cut(s) 357
BstYI RGATCY 1 cut(s) 357
BsuRI GGCC 5 cut(s) 302, 334, 371, 431, 494
BtgI CCRYGG 1 cut(s) 335
BtsCI GGATG 2 cut(s) 424, 637
BtsIMutI CAGTG 2 cut(s) 408, 549
Cac8I GCNNGC 2 cut(s) 251, 585
CfoI GCGC 1 cut(s) 583
Cfr10I RCCGGY 1 cut(s) 583
Cfr13I GGNCC 1 cut(s) 370
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 235
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 3 cut(s) 58, 426, 455
DinI GGCGCC 1 cut(s) 582
DpnI GATC 2 cut(s) 359, 671
DpnII GATC 2 cut(s) 357, 669
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
EciI GGCGGA 3 cut(s) 163, 368, 611
Ecl136II GAGCTC 1 cut(s) 240
Eco147I AGGCCT 1 cut(s) 431
Eco24I GRGCYC 3 cut(s) 116, 242, 255
Eco53kI GAGCTC 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 305
EcoT38I GRGCYC 3 cut(s) 116, 242, 255
EgeI GGCGCC 1 cut(s) 582
EheI GGCGCC 1 cut(s) 582
FaeI CATG 1 cut(s) 238
FaiI YATR 6 cut(s) 44, 158, 218, 236, 435, 473
FaqI GGGAC 1 cut(s) 412
FatI CATG 1 cut(s) 234
FauI CCCGC 1 cut(s) 516
Fnu4HI GCNGC 5 cut(s) 6, 303, 351, 423, 444
FokI GGATG 2 cut(s) 431, 644
FriOI GRGCYC 3 cut(s) 116, 242, 255
Fsp4HI GCNGC 5 cut(s) 6, 303, 351, 423, 444
GlaI GCGC 1 cut(s) 582
GluI GCNGC 5 cut(s) 6, 303, 351, 423, 444
GsaI CCCAGC 1 cut(s) 398
GsuI CTGGAG 2 cut(s) 265, 509
HaeII RGCGCY 1 cut(s) 584
HaeIII GGCC 5 cut(s) 302, 334, 371, 431, 494
HapII CCGG 7 cut(s) 325, 368, 373, 385, 495, 584, 590
HhaI GCGC 1 cut(s) 583
Hin1I GRCGYC 1 cut(s) 581
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 5 cut(s) 26, 164, 170, 321, 500
HpaII CCGG 7 cut(s) 325, 368, 373, 385, 495, 584, 590
HphI GGTGA 2 cut(s) 61, 82
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 5 cut(s) 148, 163, 169, 505, 528
Hpy188III TCNNGA 4 cut(s) 35, 325, 590, 667
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 5 cut(s) 82, 324, 370, 456, 642
HpyCH4IV ACGT 1 cut(s) 401
HpyCH4V TGCA 1 cut(s) 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 246, 428, 593
HpyF3I CTNAG 3 cut(s) 58, 426, 455
HpySE526I ACGT 1 cut(s) 401
Hsp92I GRCGYC 1 cut(s) 581
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 1 cut(s) 581
KasI GGCGCC 1 cut(s) 580
Kpn2I TCCGGA 2 cut(s) 324, 589
KroI GCCGGC 1 cut(s) 583
KroNI GCCGGC 1 cut(s) 585
Kzo9I GATC 2 cut(s) 357, 669
LmnI GCTCC 3 cut(s) 245, 381, 592
Lsp1109I GCAGC 3 cut(s) 17, 409, 430
LweI GCATC 2 cut(s) 409, 631
MaeII ACGT 1 cut(s) 401
MaeIII GTNAC 1 cut(s) 362
MalI GATC 2 cut(s) 359, 671
MboI GATC 2 cut(s) 357, 669
MboII GAAGA 5 cut(s) 236, 239, 264, 611, 650
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 3 cut(s) 116, 242, 255
MluCI AATT 1 cut(s) 478
Mly113I GGCGCC 1 cut(s) 581
MlyI GAGTC 4 cut(s) 35, 179, 330, 509
MmeI TCCRAC 4 cut(s) 157, 300, 506, 528
MroI TCCGGA 2 cut(s) 324, 589
MroNI GCCGGC 1 cut(s) 583
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 487
MspI CCGG 7 cut(s) 325, 368, 373, 385, 495, 584, 590
MspR9I CCNGG 4 cut(s) 307, 368, 373, 386
Mva1269I GAATGC 1 cut(s) 446
MvaI CCWGG 1 cut(s) 307
MwoI GCNNNNNNNGC 3 cut(s) 246, 428, 593
NaeI GCCGGC 1 cut(s) 585
NarI GGCGCC 1 cut(s) 581
NciI CCSGG 3 cut(s) 368, 373, 386
NdeII GATC 2 cut(s) 357, 669
NgoMIV GCCGGC 1 cut(s) 583
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 3 cut(s) 383, 582, 588
NmuCI GTSAC 1 cut(s) 362
OliI CACNNNNGTG 1 cut(s) 413
PceI AGGCCT 1 cut(s) 431
PctI GAATGC 1 cut(s) 446
PdiI GCCGGC 1 cut(s) 585
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 5 cut(s) 7, 304, 352, 424, 445
PleI GAGTC 4 cut(s) 34, 178, 329, 508
PluTI GGCGCC 1 cut(s) 584
PpsI GAGTC 4 cut(s) 34, 178, 329, 508
Psp124BI GAGCTC 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 394
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 3 cut(s) 383, 582, 588
PspPI GGNCC 1 cut(s) 370
PsuI RGATCY 1 cut(s) 357
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 413
SacI GAGCTC 1 cut(s) 242
SatI GCNGC 5 cut(s) 6, 303, 351, 423, 444
Sau3AI GATC 2 cut(s) 357, 669
Sau96I GGNCC 1 cut(s) 370
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 4 cut(s) 35, 179, 330, 509
ScrFI CCNGG 4 cut(s) 307, 368, 373, 386
SduI GDGCHC 3 cut(s) 116, 242, 255
SetI ASST 8 cut(s) 74, 86, 242, 287, 404, 456, 472, 612
SfaNI GCATC 2 cut(s) 409, 631
SfoI GGCGCC 1 cut(s) 582
SmiMI CAYNNNNRTG 1 cut(s) 413
Sse9I AATT 1 cut(s) 478
SseBI AGGCCT 1 cut(s) 431
SsiI CCGC 7 cut(s) 174, 303, 350, 353, 485, 509, 596
SspDI GGCGCC 1 cut(s) 580
SstI GAGCTC 1 cut(s) 242
StuI AGGCCT 1 cut(s) 431
StyD4I CCNGG 4 cut(s) 305, 366, 371, 384
TaiI ACGT 1 cut(s) 404
TaqI TCGA 3 cut(s) 36, 266, 290
TasI AATT 1 cut(s) 478
TatI WGTACW 1 cut(s) 150
TauI GCSGC 2 cut(s) 305, 353
TfiI GAWTC 1 cut(s) 164
TscAI CASTG 2 cut(s) 415, 549
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 3 cut(s) 5, 422, 443
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 2 cut(s) 415, 549
XapI RAATTY 1 cut(s) 478
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.