Rh1AG388200

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0015285
Physical Location & Seq
Forward (+)
61784852 .. 61785262
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG388200.1

Sequence Viewer

Length: 411 bp
ATGAGCTCCAAGAGCGAGCCCAAGAGAAAGTCGAGTTCTTCCAACTCCAGCTCATCGACTGGCGAGGCCGCCAGGCATTACAGGGGAGTCCGGAGAAGGCCGTGGGGCAAGTTTGCGGCGGAGATCCGTGACCCGGCCCGGAAGGGGAGCCGGGTCTGGCTGGGGACGTTTGACACTGATGTGGATGCTGCTAAGGCCTATGATTTTGCTGCATTCAAGCTCAGGGGAAGGAAAGCTATACTGAATTTTCCGCTGGAGGCCGGAGAGTCCGACCCGCCAAGTAATACGGGTCGGAAAAGGAGGAAGTCAGTGAAGCAAGAGGAGGAGGAGGAGGAGGAGGAGGCGCCGGCTCCGGAGGCGGAAGAGGTGGAGGTTCAAAGTTGGGTAGATTGGGATGGAGAAGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

136

Amino Acids

15.25

Weight (kDa)

5.63

Isoelectric Point (pI)

82.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 26 - 76 4.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07580 AT5G61590
fragaria_vesca FvH4_7g26940
malus_domestica MD01G1177200.v1.1 MD07G1248700.v1.1
prunus_persica Prupe.2G272500_v2.0.a1
pyrus_communis pycom07g22210
rosa_chinensis RchiOBHm_Chr1g0373641
rosa_laevigata RLG00000026810
rosa_multiflora Rmu_sc0013090.1_g000002
rosa_roxburghii Rroxscaffold_4G00284090
rosa_rugosa Rorug01G0378700
rosa_samantha Rh1AG388200 Rh1BG352500 Rh1CG365300
rosa_wichuraiana Rw1G034710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AccIII TCCGGA 2 cut(s) 90, 352
AciI CCGC 6 cut(s) 69, 116, 119, 251, 275, 359
AclWI GGATC 1 cut(s) 118
AcsI RAATTY 1 cut(s) 244
AcyI GRCGYC 1 cut(s) 344
AfiI CCNNNNNNNGG 2 cut(s) 133, 144
AgsI TTSAA 2 cut(s) 217, 377
AjnI CCWGG 1 cut(s) 71
AleI CACNNNNGTG 1 cut(s) 179
AluBI AGCT 4 cut(s) 6, 51, 220, 236
AluI AGCT 4 cut(s) 6, 51, 220, 236
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 1 cut(s) 118
Aor13HI TCCGGA 2 cut(s) 90, 352
AoxI GGCC 5 cut(s) 66, 98, 135, 195, 258
ApeKI GCWGC 2 cut(s) 188, 209
ApoI RAATTY 1 cut(s) 244
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 3 cut(s) 134, 139, 152
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 2 cut(s) 8, 21
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 175, 196
BccI CCATC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 73
BcnI CCSGG 3 cut(s) 134, 139, 152
BfoI RGCGCY 1 cut(s) 347
BisI GCNGC 4 cut(s) 69, 117, 189, 210
BlsI GCNGC 4 cut(s) 70, 118, 190, 211
Bme1390I CCNGG 4 cut(s) 73, 134, 139, 152
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 3 cut(s) 149, 345, 351
BmrFI CCNGG 4 cut(s) 73, 134, 139, 152
BmsI GCATC 2 cut(s) 175, 394
BpmI CTGGAG 2 cut(s) 31, 275
Bpu10I CCTNAGC 2 cut(s) 192, 221
BpuMI CCSGG 3 cut(s) 134, 139, 152
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 101
BsaWI WCCGGW 2 cut(s) 90, 352
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 144
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 64
BseAI TCCGGA 2 cut(s) 90, 352
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 2 cut(s) 190, 400
BseLI CCNNNNNNNGG 2 cut(s) 133, 144
BseMII CTCAG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 7 cut(s) 335, 338, 341, 344, 347, 350, 353
BseXI GCAGC 2 cut(s) 175, 196
BseYI CCCAGC 1 cut(s) 160
BshFI GGCC 5 cut(s) 68, 100, 137, 197, 260
BshNI GGYRCC 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 7 cut(s) 91, 134, 139, 151, 261, 347, 353
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 2 cut(s) 133, 144
BsmFI GGGAC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 5 cut(s) 68, 100, 137, 197, 260
Bsp1286I GDGCHC 2 cut(s) 8, 21
Bsp13I TCCGGA 2 cut(s) 90, 352
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 6 cut(s) 69, 116, 119, 251, 275, 359
BspANI GGCC 5 cut(s) 68, 100, 137, 197, 260
BspCNI CTCAG 1 cut(s) 234
BspEI TCCGGA 2 cut(s) 90, 352
BspLI GGNNCC 3 cut(s) 149, 345, 351
BspPI GGATC 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 343
BsrFI RCCGGY 1 cut(s) 346
BsrI ACTGG 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 1 cut(s) 123
BssNI GRCGYC 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 357
BstACI GRCGYC 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 17, 348
BstDEI CTNAG 2 cut(s) 192, 221
BstDSI CCRYGG 1 cut(s) 101
BstF5I GGATG 2 cut(s) 190, 400
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 3 cut(s) 12, 194, 356
BstNI CCWGG 1 cut(s) 73
BstSCI CCNGG 4 cut(s) 71, 132, 137, 150
BstV1I GCAGC 2 cut(s) 175, 196
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 5 cut(s) 68, 100, 137, 197, 260
BtgI CCRYGG 1 cut(s) 101
BtsCI GGATG 2 cut(s) 190, 400
BtsIMutI CAGTG 2 cut(s) 174, 315
Cac8I GCNNGC 2 cut(s) 17, 348
CfoI GCGC 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 136
DdeI CTNAG 2 cut(s) 192, 221
DinI GGCGCC 1 cut(s) 345
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
EciI GGCGGA 2 cut(s) 134, 374
Ecl136II GAGCTC 1 cut(s) 6
Eco147I AGGCCT 1 cut(s) 197
Eco24I GRGCYC 2 cut(s) 8, 21
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 71
EcoT38I GRGCYC 2 cut(s) 8, 21
EgeI GGCGCC 1 cut(s) 345
EheI GGCGCC 1 cut(s) 345
FaiI YATR 2 cut(s) 201, 239
FaqI GGGAC 1 cut(s) 178
FauI CCCGC 1 cut(s) 282
Fnu4HI GCNGC 4 cut(s) 69, 117, 189, 210
FokI GGATG 2 cut(s) 197, 407
FriOI GRGCYC 2 cut(s) 8, 21
Fsp4HI GCNGC 4 cut(s) 69, 117, 189, 210
GlaI GCGC 1 cut(s) 345
GluI GCNGC 4 cut(s) 69, 117, 189, 210
GsaI CCCAGC 1 cut(s) 164
GsuI CTGGAG 2 cut(s) 31, 275
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 5 cut(s) 68, 100, 137, 197, 260
HapII CCGG 7 cut(s) 91, 134, 139, 151, 261, 347, 353
HhaI GCGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 344
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HinfI GANTC 2 cut(s) 87, 266
HpaII CCGG 7 cut(s) 91, 134, 139, 151, 261, 347, 353
Hpy188I TCNGA 2 cut(s) 271, 294
Hpy188III TCNNGA 2 cut(s) 91, 353
HpyAV CCTTC 3 cut(s) 90, 136, 222
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 194, 356
HpyF3I CTNAG 2 cut(s) 192, 221
HpySE526I ACGT 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 344
HspAI GCGC 1 cut(s) 344
KasI GGCGCC 1 cut(s) 343
Kpn2I TCCGGA 2 cut(s) 90, 352
KroI GCCGGC 1 cut(s) 346
KroNI GCCGGC 1 cut(s) 348
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 3 cut(s) 11, 147, 355
Lsp1109I GCAGC 2 cut(s) 175, 196
LweI GCATC 2 cut(s) 175, 394
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 2 cut(s) 30, 374
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 8, 21
MluCI AATT 1 cut(s) 244
Mly113I GGCGCC 1 cut(s) 344
MlyI GAGTC 2 cut(s) 96, 275
MmeI TCCRAC 3 cut(s) 66, 272, 294
MroI TCCGGA 2 cut(s) 90, 352
MroNI GCCGGC 1 cut(s) 346
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 253
MspI CCGG 7 cut(s) 91, 134, 139, 151, 261, 347, 353
MspR9I CCNGG 4 cut(s) 73, 134, 139, 152
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 3 cut(s) 12, 194, 356
NaeI GCCGGC 1 cut(s) 348
NarI GGCGCC 1 cut(s) 344
NciI CCSGG 3 cut(s) 134, 139, 152
NdeII GATC 1 cut(s) 123
NgoMIV GCCGGC 1 cut(s) 346
NlaIV GGNNCC 3 cut(s) 149, 345, 351
NmuCI GTSAC 1 cut(s) 128
OliI CACNNNNGTG 1 cut(s) 179
PceI AGGCCT 1 cut(s) 197
PctI GAATGC 1 cut(s) 212
PdiI GCCGGC 1 cut(s) 348
PkrI GCNGC 4 cut(s) 70, 118, 190, 211
PleI GAGTC 2 cut(s) 95, 274
PluTI GGCGCC 1 cut(s) 347
PpsI GAGTC 2 cut(s) 95, 274
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 160
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 3 cut(s) 149, 345, 351
PspPI GGNCC 1 cut(s) 136
PsuI RGATCY 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 4 cut(s) 69, 117, 189, 210
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 2 cut(s) 96, 275
ScrFI CCNGG 4 cut(s) 73, 134, 139, 152
SduI GDGCHC 2 cut(s) 8, 21
SetI ASST 7 cut(s) 8, 53, 170, 222, 238, 369, 375
SfaNI GCATC 2 cut(s) 175, 394
SfoI GGCGCC 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 1 cut(s) 244
SseBI AGGCCT 1 cut(s) 197
SsiI CCGC 6 cut(s) 69, 116, 119, 251, 275, 359
SspDI GGCGCC 1 cut(s) 343
SstI GAGCTC 1 cut(s) 8
StuI AGGCCT 1 cut(s) 197
StyD4I CCNGG 4 cut(s) 71, 132, 137, 150
TaiI ACGT 1 cut(s) 170
TaqI TCGA 2 cut(s) 32, 56
TasI AATT 1 cut(s) 244
TauI GCSGC 2 cut(s) 71, 119
TscAI CASTG 2 cut(s) 181, 315
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 2 cut(s) 188, 209
Tsp45I GTSAC 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 2 cut(s) 181, 315
XapI RAATTY 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.