Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015285

Physical Location & Seq

Genomic Coordinates Reverse (-)

24764256 .. 24765511

Gene Structure 1256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGACTTTTGAGGAAAGCTCTGATTTGGATGTTATACAGAAACATCTATTTGAAGACTTGATGATCCCTGATGGTTTCATTGAAGATTTTGTCTTTGATGATACTGCTTTTGTCTCCGGACTCTGGTCTCTAGAACCCTTTAACCCAGTTCCGAAACTGGAACCTAGTTCACCTGTTCTTGATCCAGATTCCTATGTCCAAGAGATTCTGCAAATGGAAGCAGAATCATCATCATCATCATCAACAACAACGTCACCTGAGGTTGAGACTGTCTCAAACCGGAAAAAAACAAAGAGGTTTGAAGAAACGAGACATTACAGAGGCGTGAGAAGGAGGCCATGGGGGAAATTTGCAGCAGAGATTCGAGATCCGGCAAAGAAAGGATCCAGGATTTGGTTAGGCACTTTTGAGAGTGATATTGATGCTGCAAGGGCTTACGACTATGCAGCTTTTAAGCTCAGGGGAAGAAAAGCTGTTCTCAACTTTCCTTTGGATGCCGGAAAGTATGATGCTCCGGTCAATTCATGCCGAAAAAGGAGGAGAACCGATGTACCACAGCCTCAAGGAACAACAACAAGTACTTCATCATCGTCATCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1904276 GO:1904277 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

201

Amino Acids

22.73

Weight (kDa)

5.38

Isoelectric Point (pI)

77.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	106 - 156	1.7e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07580 AT5G61590
fragaria_vesca	FvH4_7g26940
malus_domestica	MD01G1177200.v1.1 MD07G1248700.v1.1
prunus_persica	Prupe.2G272500_v2.0.a1
pyrus_communis	pycom07g22210
rosa_chinensis	RchiOBHm_Chr1g0373641
rosa_laevigata	RLG00000026810
rosa_multiflora	Rmu_sc0013090.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284090
rosa_rugosa	Rorug01G0378700
rosa_samantha	Rh1AG388200 Rh1BG352500 Rh1CG365300
rosa_wichuraiana	Rw1G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	396
AccIII	TCCGGA	1 cut(s)	119
AclWI	GGATC	5 cut(s)	61, 179, 365, 381, 394
AcsI	RAATTY	1 cut(s)	350
AfaI	GTAC	2 cut(s)	555, 583
AfiI	CCNNNNNNNGG	2 cut(s)	126, 396
AgsI	TTSAA	3 cut(s)	56, 86, 305
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	4 cut(s)	21, 452, 460, 476
AluI	AGCT	4 cut(s)	21, 452, 460, 476
Alw26I	GTCTC	5 cut(s)	121, 135, 263, 280, 307
AlwI	GGATC	5 cut(s)	61, 179, 365, 381, 394
Aor13HI	TCCGGA	1 cut(s)	119
AoxI	GGCC	1 cut(s)	338
ApeKI	GCWGC	3 cut(s)	356, 428, 449
ApoI	RAATTY	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	165, 249
AxyI	CCTNAGG	1 cut(s)	261
BaeI	ACNNNNGTAYC	2 cut(s)	537, 570
BamHI	GGATCC	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	368, 415, 461
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	391
BcoDI	GTCTC	5 cut(s)	121, 135, 263, 280, 307
BfaI	CTAG	2 cut(s)	134, 168
BisI	GCNGC	3 cut(s)	357, 429, 450
BlsI	GCNGC	3 cut(s)	358, 430, 451
BmcAI	AGTACT	1 cut(s)	583
Bme1390I	CCNGG	1 cut(s)	391
BmiI	GGNNCC	2 cut(s)	165, 388
BmrFI	CCNGG	1 cut(s)	391
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	3 cut(s)	415, 487, 502
BmuI	ACTGGG	1 cut(s)	143
BoxI	GACNNNNGTC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	3 cut(s)	37, 260, 292
Bpu10I	CCTNAGC	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	549
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	341
BsaWI	WCCGGW	3 cut(s)	119, 282, 517
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 396
Bse1I	ACTGG	2 cut(s)	149, 165
Bse21I	CCTNAGG	1 cut(s)	261
BseAI	TCCGGA	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	2 cut(s)	37, 502
BseLI	CCNNNNNNNGG	2 cut(s)	126, 396
BseMII	CTCAG	2 cut(s)	252, 475
BseNI	ACTGG	2 cut(s)	149, 165
BseRI	GAGGAG	1 cut(s)	556
BseXI	GCAGC	3 cut(s)	368, 415, 461
BshFI	GGCC	1 cut(s)	340
BsiSI	CCGG	5 cut(s)	120, 283, 374, 501, 518
BslI	CCNNNNNNNGG	2 cut(s)	126, 396
BsmAI	GTCTC	5 cut(s)	121, 135, 263, 280, 307
BsnI	GGCC	1 cut(s)	340
Bso31I	GGTCTC	1 cut(s)	135
Bsp13I	TCCGGA	1 cut(s)	119
Bsp143I	GATC	4 cut(s)	66, 184, 370, 386
Bsp19I	CCATGG	1 cut(s)	341
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	2 cut(s)	253, 474
BspEI	TCCGGA	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	165, 388
BspPI	GGATC	5 cut(s)	61, 179, 365, 381, 394
BspTNI	GGTCTC	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	149, 165
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	4 cut(s)	66, 184, 370, 386
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	274
BstDEI	CTNAG	2 cut(s)	261, 461
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	37, 502
BstKTI	GATC	4 cut(s)	69, 187, 373, 389
BstMAI	GTCTC	5 cut(s)	121, 135, 263, 280, 307
BstMBI	GATC	4 cut(s)	66, 184, 370, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNI	CCWGG	1 cut(s)	391
BstPAI	GACNNNNGTC	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	389
BstV1I	GCAGC	3 cut(s)	368, 415, 461
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	2 cut(s)	370, 386
BstYI	RGATCY	2 cut(s)	370, 386
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	340
BtgI	CCRYGG	1 cut(s)	341
BtsCI	GGATG	2 cut(s)	37, 502
Csp6I	GTAC	2 cut(s)	554, 582
CviAII	CATG	2 cut(s)	342, 528
CviJI	RGCY	7 cut(s)	21, 340, 437, 452, 460, 476, 562
CviKI_1	RGCY	7 cut(s)	21, 340, 437, 452, 460, 476, 562
CviQI	GTAC	2 cut(s)	554, 582
DdeI	CTNAG	2 cut(s)	261, 461
DpnI	GATC	4 cut(s)	68, 186, 372, 388
DpnII	GATC	4 cut(s)	66, 184, 370, 386
Eco130I	CCWWGG	1 cut(s)	341
Eco31I	GGTCTC	1 cut(s)	135
Eco81I	CCTNAGG	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	2 cut(s)	345, 531
FaiI	YATR	6 cut(s)	38, 198, 343, 447, 510, 529
FatI	CATG	2 cut(s)	341, 527
Fnu4HI	GCNGC	3 cut(s)	357, 429, 450
FokI	GGATG	2 cut(s)	44, 509
Fsp4HI	GCNGC	3 cut(s)	357, 429, 450
FspBI	CTAG	2 cut(s)	134, 168
GluI	GCNGC	3 cut(s)	357, 429, 450
HaeIII	GGCC	1 cut(s)	340
HapII	CCGG	5 cut(s)	120, 283, 374, 501, 518
Hin1II	CATG	2 cut(s)	345, 531
HinfI	GANTC	5 cut(s)	123, 191, 208, 227, 364
HpaII	CCGG	5 cut(s)	120, 283, 374, 501, 518
HphI	GGTGA	2 cut(s)	165, 249
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	2 cut(s)	25, 156
Hpy188III	TCNNGA	5 cut(s)	120, 134, 182, 188, 368
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	4 cut(s)	214, 356, 431, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	2 cut(s)	261, 461
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	345, 531
Kpn2I	TCCGGA	1 cut(s)	119
Kzo9I	GATC	4 cut(s)	66, 184, 370, 386
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	3 cut(s)	368, 415, 461
LweI	GCATC	3 cut(s)	415, 487, 502
MaeI	CTAG	2 cut(s)	134, 168
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	4 cut(s)	68, 186, 372, 388
MboI	GATC	4 cut(s)	66, 184, 370, 386
MboII	GAAGA	4 cut(s)	68, 98, 317, 480
MflI	RGATCY	2 cut(s)	370, 386
MluCI	AATT	2 cut(s)	350, 523
MlyI	GAGTC	1 cut(s)	117
MnlI	CCTC	7 cut(s)	7, 256, 291, 317, 330, 534, 573
MroI	TCCGGA	1 cut(s)	119
MseI	TTAA	2 cut(s)	144, 456
MspI	CCGG	5 cut(s)	120, 283, 374, 501, 518
MspR9I	CCNGG	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	1 cut(s)	434
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	4 cut(s)	66, 184, 370, 386
NlaIII	CATG	2 cut(s)	345, 531
NlaIV	GGNNCC	2 cut(s)	165, 388
NmuCI	GTSAC	1 cut(s)	255
PfeI	GAWTC	4 cut(s)	191, 208, 227, 364
PflMI	CCANNNNNTGG	1 cut(s)	396
PfoI	TCCNGGA	1 cut(s)	389
PkrI	GCNGC	3 cut(s)	358, 430, 451
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PshAI	GACNNNNGTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	2 cut(s)	165, 388
PsuI	RGATCY	2 cut(s)	370, 386
RsaI	GTAC	2 cut(s)	555, 583
RsaNI	GTAC	2 cut(s)	554, 582
SaqAI	TTAA	2 cut(s)	144, 456
SatI	GCNGC	3 cut(s)	357, 429, 450
Sau3AI	GATC	4 cut(s)	66, 184, 370, 386
ScaI	AGTACT	1 cut(s)	583
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	391
SfaNI	GCATC	3 cut(s)	415, 487, 502
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
Sse9I	AATT	2 cut(s)	350, 523
SspMI	CTAG	2 cut(s)	134, 168
StyD4I	CCNGG	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	367
TasI	AATT	2 cut(s)	350, 523
TatI	WGTACW	1 cut(s)	581
TfiI	GAWTC	4 cut(s)	191, 208, 227, 364
Tru1I	TTAA	2 cut(s)	144, 456
Tru9I	TTAA	2 cut(s)	144, 456
TseFI	GTSAC	1 cut(s)	255
TseI	GCWGC	3 cut(s)	356, 428, 449
Tsp45I	GTSAC	1 cut(s)	255
TspDTI	ATGAA	3 cut(s)	70, 516, 576
Van91I	CCANNNNNTGG	1 cut(s)	396
XapI	RAATTY	1 cut(s)	350
XbaI	TCTAGA	1 cut(s)	133
XspI	CTAG	2 cut(s)	134, 168
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.