MD07G1248700.v1.1

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015285
Physical Location & Seq
Forward (+)
31798700 .. 31799401
702 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1248700.v1.1.491

Sequence Viewer

Length: 702 bp
ATGGCAATTAGCTTCCCCTTCTGCTCTCACTTCGACATGTCAGCACATGAAGAACAAGATGATTCAACGCTTGAGCTCATCCGCCAACACCTCTTAGGAGACTTCACCTTCACAGATTCCTTCATTTCTCATCTCAATTTCCAATTTCAACCAGTCAAGCCGGAGTACTCGTCCCTCTCTGAATCAGGGCCCAGCTCCCCCATTTCAAACCCTAATCACCATAGCCCCCAATTCTCAAATTCCGAAACGAAACCCAAAATCGTTAACTTACCATCCATGGAAGTAGAGCCCCTGAATTTGAGCTCACCAAAGAGAAAAAATAGTACTTCTCAAAATCCCGGTCCAAAAGATGAATTACAACAGGTTTCAGGCCCTGGTGATGCGTTAAGGCATTACAGGGGAGTCCGGCGGAGGCCGTGGGGAAAATACGCGGCGGAGATACGTGATCCGGCCCGGAAAGGTACTCGGGTTTGGCTAGGGACATTTGACACTGATGTTGATGCTGCCAAGGCCTATGATTGTGCTGCATTTAAGCTGAGGGGTAGGAAAGCAATACTGAATTTTCCGTTGGAGGCCGGAGTGTCGGAACCGCCGGTGAACACGGCGCGGAAGAGGAGGAGATCGGTAAAGCAGGAGGAGGTAGCTGAGACTGAAGAACTGGAGCTTCAAAGTTGGGTGCTTTGGGAAGGAGAAGGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

234

Amino Acids

26.25

Weight (kDa)

6.19

Isoelectric Point (pI)

68.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 131 - 181 2.3e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07580 AT5G61590
fragaria_vesca FvH4_7g26940
malus_domestica MD01G1177200.v1.1 MD07G1248700.v1.1
prunus_persica Prupe.2G272500_v2.0.a1
pyrus_communis pycom07g22210
rosa_chinensis RchiOBHm_Chr1g0373641
rosa_laevigata RLG00000026810
rosa_multiflora Rmu_sc0013090.1_g000002
rosa_roxburghii Rroxscaffold_4G00284090
rosa_rugosa Rorug01G0378700
rosa_samantha Rh1AG388200 Rh1BG352500 Rh1CG365300
rosa_wichuraiana Rw1G034710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 431, 607
AciI CCGC 6 cut(s) 82, 409, 431, 434, 590, 607
AclWI GGATC 1 cut(s) 440
AcsI RAATTY 3 cut(s) 238, 295, 559
AcuI CTGAAG 1 cut(s) 672
AfaI GTAC 3 cut(s) 167, 325, 463
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 4 cut(s) 66, 149, 207, 668
AjnI CCWGG 1 cut(s) 373
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AluBI AGCT 7 cut(s) 12, 76, 195, 303, 535, 644, 664
AluI AGCT 7 cut(s) 12, 76, 195, 303, 535, 644, 664
Alw21I GWGCWC 2 cut(s) 78, 305
Alw26I GTCTC 2 cut(s) 93, 641
AlwI GGATC 1 cut(s) 440
AlwNI CAGNNNCTG 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 465
AoxI GGCC 6 cut(s) 188, 370, 413, 450, 510, 573
ApaI GGGCCC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 503, 524
ApoI RAATTY 3 cut(s) 238, 295, 559
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AspLEI GCGC 1 cut(s) 607
AspS9I GGNCC 5 cut(s) 188, 189, 341, 371, 451
AsuC2I CCSGG 2 cut(s) 339, 454
AsuHPI GGTGA 5 cut(s) 97, 209, 297, 389, 607
AvaI CYCGRG 1 cut(s) 465
AvaII GGWCC 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 192
BaeI ACNNNNGTAYC 2 cut(s) 453, 486
BanII GRGCYC 4 cut(s) 78, 192, 291, 305
Bbv12I GWGCWC 2 cut(s) 78, 305
BbvCI CCTCAGC 1 cut(s) 536
BbvI GCAGC 2 cut(s) 490, 511
BccI CCATC 1 cut(s) 280
BceAI ACGGC 2 cut(s) 400, 618
BciT130I CCWGG 1 cut(s) 375
BcnI CCSGG 2 cut(s) 339, 454
BcoDI GTCTC 2 cut(s) 93, 641
BfaI CTAG 1 cut(s) 476
BisI GCNGC 3 cut(s) 432, 504, 525
BlsI GCNGC 3 cut(s) 433, 505, 526
BmcAI AGTACT 2 cut(s) 167, 325
Bme1390I CCNGG 3 cut(s) 339, 375, 454
Bme18I GGWCC 1 cut(s) 341
BmeT110I CYCGRG 1 cut(s) 465
BmgT120I GGNCC 5 cut(s) 188, 189, 341, 371, 451
BmiI GGNNCC 2 cut(s) 190, 588
BmrFI CCNGG 3 cut(s) 339, 375, 454
BmsI GCATC 2 cut(s) 370, 490
BpmI CTGGAG 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 536
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 2 cut(s) 339, 454
BsaAI YACGTR 1 cut(s) 443
BsaJI CCNNGG 4 cut(s) 276, 373, 416, 507
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 2 cut(s) 152, 663
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 4 cut(s) 276, 373, 416, 507
BseGI GGATG 2 cut(s) 78, 272
BseMII CTCAG 2 cut(s) 527, 636
BseNI ACTGG 2 cut(s) 152, 663
BseRI GAGGAG 3 cut(s) 628, 631, 650
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 2 cut(s) 490, 511
BseYI CCCAGC 1 cut(s) 191
Bsh1236I CGCG 2 cut(s) 431, 607
BshFI GGCC 6 cut(s) 190, 372, 415, 452, 512, 575
BsiHKAI GWGCWC 2 cut(s) 78, 305
BsiHKCI CYCGRG 1 cut(s) 465
BsiSI CCGG 7 cut(s) 161, 339, 406, 449, 454, 576, 593
BslFI GGGAC 2 cut(s) 157, 493
BsmAI GTCTC 2 cut(s) 93, 641
BsmFI GGGAC 2 cut(s) 157, 493
BsnI GGCC 6 cut(s) 190, 372, 415, 452, 512, 575
BsoBI CYCGRG 1 cut(s) 465
Bsp120I GGGCCC 1 cut(s) 188
Bsp1286I GDGCHC 4 cut(s) 78, 192, 291, 305
Bsp143I GATC 2 cut(s) 445, 620
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 6 cut(s) 82, 409, 431, 434, 590, 607
BspANI GGCC 6 cut(s) 190, 372, 415, 452, 512, 575
BspCNI CTCAG 2 cut(s) 528, 637
BspFNI CGCG 2 cut(s) 431, 607
BspLI GGNNCC 2 cut(s) 190, 588
BspPI GGATC 1 cut(s) 440
BsrFI RCCGGY 1 cut(s) 592
BsrI ACTGG 2 cut(s) 152, 663
BssAI RCCGGY 1 cut(s) 592
BssECI CCNNGG 4 cut(s) 276, 373, 416, 507
BssMI GATC 2 cut(s) 445, 620
BssT1I CCWWGG 2 cut(s) 276, 507
Bst2UI CCWGG 1 cut(s) 375
Bst6I CTCTTC 1 cut(s) 605
BstBAI YACGTR 1 cut(s) 443
BstDEI CTNAG 3 cut(s) 94, 536, 645
BstDSI CCRYGG 2 cut(s) 276, 416
BstF5I GGATG 2 cut(s) 78, 272
BstFNI CGCG 2 cut(s) 431, 607
BstHHI GCGC 1 cut(s) 607
BstKTI GATC 2 cut(s) 448, 623
BstMAI GTCTC 2 cut(s) 93, 641
BstMBI GATC 2 cut(s) 445, 620
BstMWI GCNNNNNNNGC 1 cut(s) 509
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 3 cut(s) 337, 373, 452
BstSLI GKGCMC 1 cut(s) 192
BstUI CGCG 2 cut(s) 431, 607
BstV1I GCAGC 2 cut(s) 490, 511
BsuRI GGCC 6 cut(s) 190, 372, 415, 452, 512, 575
BtgI CCRYGG 2 cut(s) 276, 416
BtsCI GGATG 2 cut(s) 78, 272
BtsIMutI CAGTG 1 cut(s) 489
CaiI CAGNNNCTG 1 cut(s) 374
CfoI GCGC 1 cut(s) 607
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 5 cut(s) 188, 189, 341, 371, 451
Csp6I GTAC 3 cut(s) 166, 324, 462
CviAII CATG 3 cut(s) 37, 47, 277
CviQI GTAC 3 cut(s) 166, 324, 462
DdeI CTNAG 3 cut(s) 94, 536, 645
DpnI GATC 2 cut(s) 447, 622
DpnII GATC 2 cut(s) 445, 620
Eam1104I CTCTTC 1 cut(s) 605
EarI CTCTTC 1 cut(s) 605
EciI GGCGGA 3 cut(s) 71, 424, 449
Ecl136II GAGCTC 2 cut(s) 76, 303
Eco130I CCWWGG 2 cut(s) 276, 507
Eco147I AGGCCT 1 cut(s) 512
Eco24I GRGCYC 4 cut(s) 78, 192, 291, 305
Eco47I GGWCC 1 cut(s) 341
Eco53kI GAGCTC 2 cut(s) 76, 303
Eco57I CTGAAG 1 cut(s) 672
Eco88I CYCGRG 1 cut(s) 465
EcoICRI GAGCTC 2 cut(s) 76, 303
EcoO109I RGGNCCY 2 cut(s) 188, 371
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 2 cut(s) 276, 507
EcoT38I GRGCYC 4 cut(s) 78, 192, 291, 305
ErhI CCWWGG 2 cut(s) 276, 507
FaeI CATG 3 cut(s) 40, 50, 280
FaiI YATR 5 cut(s) 38, 48, 222, 278, 516
FaqI GGGAC 2 cut(s) 157, 493
FatI CATG 3 cut(s) 36, 46, 276
Fnu4HI GCNGC 3 cut(s) 432, 504, 525
FokI GGATG 2 cut(s) 65, 259
FriOI GRGCYC 4 cut(s) 78, 192, 291, 305
Fsp4HI GCNGC 3 cut(s) 432, 504, 525
FspBI CTAG 1 cut(s) 476
GlaI GCGC 1 cut(s) 606
GluI GCNGC 3 cut(s) 432, 504, 525
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 6 cut(s) 190, 372, 415, 452, 512, 575
HapII CCGG 7 cut(s) 161, 339, 406, 449, 454, 576, 593
HhaI GCGC 1 cut(s) 607
Hin1II CATG 3 cut(s) 40, 50, 280
Hin6I GCGC 1 cut(s) 605
HinP1I GCGC 1 cut(s) 605
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 4 cut(s) 62, 116, 182, 402
HpaI GTTAAC 1 cut(s) 265
HpaII CCGG 7 cut(s) 161, 339, 406, 449, 454, 576, 593
HphI GGTGA 5 cut(s) 97, 209, 297, 389, 607
Hpy166II GTNNAC 2 cut(s) 265, 598
Hpy188I TCNGA 3 cut(s) 181, 244, 586
Hpy8I GTNNAC 2 cut(s) 265, 598
HpyAV CCTTC 5 cut(s) 28, 118, 130, 680, 686
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 1 cut(s) 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 509
HpyF3I CTNAG 3 cut(s) 94, 536, 645
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 3 cut(s) 40, 50, 280
HspAI GCGC 1 cut(s) 605
KspAI GTTAAC 1 cut(s) 265
Kzo9I GATC 2 cut(s) 445, 620
LmnI GCTCC 2 cut(s) 200, 661
Lsp1109I GCAGC 2 cut(s) 490, 511
LweI GCATC 2 cut(s) 370, 490
MaeI CTAG 1 cut(s) 476
MaeII ACGT 1 cut(s) 442
MalI GATC 2 cut(s) 447, 622
MboI GATC 2 cut(s) 445, 620
MboII GAAGA 3 cut(s) 62, 622, 665
MhlI GDGCHC 4 cut(s) 78, 192, 291, 305
MluCI AATT 8 cut(s) 6, 136, 143, 230, 238, 295, 353, 559
MlyI GAGTC 1 cut(s) 411
MmeI TCCRAC 2 cut(s) 549, 564
MnlI CCTC 9 cut(s) 101, 185, 405, 531, 565, 606, 609, 628, 631
MseI TTAA 3 cut(s) 264, 386, 531
MspI CCGG 7 cut(s) 161, 339, 406, 449, 454, 576, 593
MspR9I CCNGG 3 cut(s) 339, 375, 454
MvaI CCWGG 1 cut(s) 375
MvnI CGCG 2 cut(s) 431, 607
MwoI GCNNNNNNNGC 1 cut(s) 509
NciI CCSGG 2 cut(s) 339, 454
NcoI CCATGG 1 cut(s) 276
NdeII GATC 2 cut(s) 445, 620
NlaIII CATG 3 cut(s) 40, 50, 280
NlaIV GGNNCC 2 cut(s) 190, 588
NspI RCATGY 1 cut(s) 40
PceI AGGCCT 1 cut(s) 512
PciI ACATGT 1 cut(s) 36
PfeI GAWTC 3 cut(s) 62, 116, 182
PkrI GCNGC 3 cut(s) 433, 505, 526
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 443
PscI ACATGT 1 cut(s) 36
Psp124BI GAGCTC 2 cut(s) 78, 305
Psp6I CCWGG 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 2 cut(s) 190, 588
PspOMI GGGCCC 1 cut(s) 188
PspPI GGNCC 5 cut(s) 188, 189, 341, 371, 451
PstNI CAGNNNCTG 1 cut(s) 374
RsaI GTAC 3 cut(s) 167, 325, 463
RsaNI GTAC 3 cut(s) 166, 324, 462
SacI GAGCTC 2 cut(s) 78, 305
SaqAI TTAA 3 cut(s) 264, 386, 531
SatI GCNGC 3 cut(s) 432, 504, 525
Sau3AI GATC 2 cut(s) 445, 620
Sau96I GGNCC 5 cut(s) 188, 189, 341, 371, 451
ScaI AGTACT 2 cut(s) 167, 325
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 3 cut(s) 339, 375, 454
SduI GDGCHC 4 cut(s) 78, 192, 291, 305
SfaNI GCATC 2 cut(s) 370, 490
SgrAI CRCCGGYG 1 cut(s) 592
SinI GGWCC 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 8 cut(s) 6, 136, 143, 230, 238, 295, 353, 559
SseBI AGGCCT 1 cut(s) 512
SsiI CCGC 6 cut(s) 82, 409, 431, 434, 590, 607
SspMI CTAG 1 cut(s) 476
SstI GAGCTC 2 cut(s) 78, 305
StuI AGGCCT 1 cut(s) 512
StyD4I CCNGG 3 cut(s) 337, 373, 452
StyI CCWWGG 2 cut(s) 276, 507
TaiI ACGT 1 cut(s) 445
TaqI TCGA 1 cut(s) 33
TasI AATT 8 cut(s) 6, 136, 143, 230, 238, 295, 353, 559
TatI WGTACW 2 cut(s) 165, 323
TauI GCSGC 1 cut(s) 434
TfiI GAWTC 3 cut(s) 62, 116, 182
Tru1I TTAA 3 cut(s) 264, 386, 531
Tru9I TTAA 3 cut(s) 264, 386, 531
TscAI CASTG 1 cut(s) 496
TseI GCWGC 2 cut(s) 503, 524
TspDTI ATGAA 3 cut(s) 63, 112, 366
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 1 cut(s) 496
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 3 cut(s) 238, 295, 559
XceI RCATGY 1 cut(s) 40
XspI CTAG 1 cut(s) 476
ZrmI AGTACT 2 cut(s) 167, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.