FvH4_7g26940

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015285
Physical Location & Seq
Forward (+)
20230314 .. 20231608
1295 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26940.t1

Sequence Viewer

Length: 648 bp
ATGGCAGCAACCCAAGAGCAAGATGAGTCAACTCTGGAGCTCATTCGCCAACATCTCTTAGGAGACTTCACCTTCACAGACAACTTCATAACCAATCTCAACTTCGACCAAACCCCAGAACTCTACTTCCAACCCATCATCAAGTCCGAGTACTCCATATCCGAATCCGAGTCCACTTCCCCTGTTTCAAGCTGCCTCAACCCGAAACCCGAACCCGTAACCGAAGAAGAACCCATGAGCAGCGAGCCCAAGAGAAAGTCAAGCAGCTCTTCCAACTCCAGCTCGTCGACGGGGGAGGTGAGCAGGCATTACAGGGGAGTCAGGAGAAGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGTGACCCGGCCCGGAAGGGCAGCCGGGTCTGGTTGGGGACGTTTGACACTGATGTGGATGCTGCCAAGGCTTATGACTGTGCTGCATTCAAGCTCAGGGGAAGGAAAGCTATACTGAATTTTCCGCTGGAGGCCGGAGAGTCTAACCCGCCGAGTAATACGGGTCGGAAGAGGAGGAAGGCGGTGAAGCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGCGCCGGAGCCGGAGGAGTTGGAGGTGCAGAGCTGGGTGGATTGGGATGGAGAAGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

216

Amino Acids

24.35

Weight (kDa)

4.69

Isoelectric Point (pI)

84.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 103 - 153 1.4e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07580 AT5G61590
fragaria_vesca FvH4_7g26940
malus_domestica MD01G1177200.v1.1 MD07G1248700.v1.1
prunus_persica Prupe.2G272500_v2.0.a1
pyrus_communis pycom07g22210
rosa_chinensis RchiOBHm_Chr1g0373641
rosa_laevigata RLG00000026810
rosa_multiflora Rmu_sc0013090.1_g000002
rosa_roxburghii Rroxscaffold_4G00284090
rosa_rugosa Rorug01G0378700
rosa_samantha Rh1AG388200 Rh1BG352500 Rh1CG365300
rosa_wichuraiana Rw1G034710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 586
AccI GTMKAC 1 cut(s) 287
AccII CGCG 1 cut(s) 347
AciI CCGC 5 cut(s) 347, 350, 482, 506, 539
AclWI GGATC 1 cut(s) 349
AcsI RAATTY 1 cut(s) 475
AcyI GRCGYC 1 cut(s) 587
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 2 cut(s) 189, 448
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AleI CACNNNNGTG 1 cut(s) 410
AloI GAACNNNNNNTCC 2 cut(s) 111, 143
AluBI AGCT 8 cut(s) 40, 192, 267, 282, 451, 467, 618, 644
AluI AGCT 8 cut(s) 40, 192, 267, 282, 451, 467, 618, 644
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 349
AoxI GGCC 3 cut(s) 329, 366, 489
ApeKI GCWGC 7 cut(s) 5, 192, 240, 264, 378, 419, 440
ApoI RAATTY 1 cut(s) 475
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 1 cut(s) 367
AsuC2I CCSGG 3 cut(s) 365, 370, 383
AsuHPI GGTGA 3 cut(s) 61, 310, 553
BanI GGYRCC 1 cut(s) 586
BanII GRGCYC 2 cut(s) 42, 249
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 7 cut(s) 17, 179, 252, 276, 390, 406, 427
BccI CCATC 2 cut(s) 143, 626
BceAI ACGGC 1 cut(s) 316
BcnI CCSGG 3 cut(s) 365, 370, 383
BcoDI GTCTC 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 590
BisI GCNGC 8 cut(s) 6, 193, 241, 265, 348, 379, 420, 441
BlsI GCNGC 8 cut(s) 7, 194, 242, 266, 349, 380, 421, 442
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 3 cut(s) 365, 370, 383
BmgT120I GGNCC 1 cut(s) 367
BmiI GGNNCC 2 cut(s) 588, 594
BmrFI CCNGG 3 cut(s) 365, 370, 383
BmsI GCATC 1 cut(s) 406
BpmI CTGGAG 3 cut(s) 56, 262, 506
Bpu10I CCTNAGC 1 cut(s) 452
BpuMI CCSGG 3 cut(s) 365, 370, 383
BsaHI GRCGYC 1 cut(s) 587
BsaJI CCNNGG 2 cut(s) 332, 423
Bsc4I CCNNNNNNNGG 1 cut(s) 364
BseDI CCNNGG 2 cut(s) 332, 423
BseGI GGATG 2 cut(s) 421, 637
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 466
BseXI GCAGC 7 cut(s) 17, 179, 252, 276, 390, 406, 427
BseYI CCCAGC 1 cut(s) 618
BsgI GTGCAG 1 cut(s) 632
Bsh1236I CGCG 1 cut(s) 347
BshFI GGCC 3 cut(s) 331, 368, 491
BshNI GGYRCC 1 cut(s) 586
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 6 cut(s) 365, 370, 382, 492, 590, 596
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 409
BsmI GAATGC 1 cut(s) 443
BsnI GGCC 3 cut(s) 331, 368, 491
Bsp1286I GDGCHC 2 cut(s) 42, 249
Bsp143I GATC 1 cut(s) 354
BspACI CCGC 5 cut(s) 347, 350, 482, 506, 539
BspANI GGCC 3 cut(s) 331, 368, 491
BspCNI CTCAG 1 cut(s) 465
BspFNI CGCG 1 cut(s) 347
BspLI GGNNCC 2 cut(s) 588, 594
BspPI GGATC 1 cut(s) 349
BspQI GCTCTTC 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 586
BssECI CCNNGG 2 cut(s) 332, 423
BssMI GATC 1 cut(s) 354
BssNI GRCGYC 1 cut(s) 587
BssT1I CCWWGG 1 cut(s) 423
Bst4CI ACNGT 1 cut(s) 437
Bst6I CTCTTC 2 cut(s) 274, 521
BstACI GRCGYC 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 245, 305
BstDEI CTNAG 2 cut(s) 58, 452
BstDSI CCRYGG 1 cut(s) 332
BstF5I GGATG 2 cut(s) 421, 637
BstFNI CGCG 1 cut(s) 347
BstH2I RGCGCY 1 cut(s) 590
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 1 cut(s) 357
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 1 cut(s) 354
BstMWI GCNNNNNNNGC 1 cut(s) 425
BstSCI CCNGG 3 cut(s) 363, 368, 381
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 7 cut(s) 17, 179, 252, 276, 390, 406, 427
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BsuRI GGCC 3 cut(s) 331, 368, 491
BtgI CCRYGG 1 cut(s) 332
BtsCI GGATG 2 cut(s) 421, 637
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 2 cut(s) 245, 305
CfoI GCGC 1 cut(s) 589
Cfr13I GGNCC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 235
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 2 cut(s) 58, 452
DinI GGCGCC 1 cut(s) 588
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 274, 521
EarI CTCTTC 2 cut(s) 274, 521
EciI GGCGGA 1 cut(s) 365
Ecl136II GAGCTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 423
Eco24I GRGCYC 2 cut(s) 42, 249
Eco53kI GAGCTC 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 423
EcoT38I GRGCYC 2 cut(s) 42, 249
EgeI GGCGCC 1 cut(s) 588
EheI GGCGCC 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 1 cut(s) 238
FaiI YATR 5 cut(s) 89, 158, 236, 432, 470
FalI AAGNNNNNCTT 2 cut(s) 253, 285
FaqI GGGAC 1 cut(s) 409
FatI CATG 1 cut(s) 234
FauI CCCGC 1 cut(s) 513
FblI GTMKAC 1 cut(s) 287
Fnu4HI GCNGC 8 cut(s) 6, 193, 241, 265, 348, 379, 420, 441
FokI GGATG 2 cut(s) 428, 644
FriOI GRGCYC 2 cut(s) 42, 249
Fsp4HI GCNGC 8 cut(s) 6, 193, 241, 265, 348, 379, 420, 441
GlaI GCGC 1 cut(s) 588
GluI GCNGC 8 cut(s) 6, 193, 241, 265, 348, 379, 420, 441
GsaI CCCAGC 1 cut(s) 622
GsuI CTGGAG 3 cut(s) 56, 262, 506
HaeII RGCGCY 1 cut(s) 590
HaeIII GGCC 3 cut(s) 331, 368, 491
HapII CCGG 6 cut(s) 365, 370, 382, 492, 590, 596
HhaI GCGC 1 cut(s) 589
Hin1I GRCGYC 1 cut(s) 587
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HincII GTYRAC 2 cut(s) 30, 288
HindII GTYRAC 2 cut(s) 30, 288
HindIII AAGCTT 1 cut(s) 642
HinfI GANTC 5 cut(s) 26, 164, 170, 318, 497
HpaII CCGG 6 cut(s) 365, 370, 382, 492, 590, 596
HphI GGTGA 3 cut(s) 61, 310, 553
Hpy166II GTNNAC 3 cut(s) 30, 174, 288
Hpy188I TCNGA 4 cut(s) 148, 163, 169, 525
Hpy188III TCNNGA 2 cut(s) 35, 322
Hpy8I GTNNAC 3 cut(s) 30, 174, 288
Hpy99I CGWCG 2 cut(s) 289, 292
HpyAV CCTTC 6 cut(s) 82, 321, 367, 453, 529, 577
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4IV ACGT 1 cut(s) 398
HpyCH4V TGCA 2 cut(s) 443, 613
HpyF10VI GCNNNNNNNGC 1 cut(s) 425
HpyF3I CTNAG 2 cut(s) 58, 452
HpySE526I ACGT 1 cut(s) 398
Hsp92I GRCGYC 1 cut(s) 587
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 1 cut(s) 587
KasI GGCGCC 1 cut(s) 586
Kzo9I GATC 1 cut(s) 354
LguI GCTCTTC 1 cut(s) 274
LmnI GCTCC 2 cut(s) 37, 592
Lsp1109I GCAGC 7 cut(s) 17, 179, 252, 276, 390, 406, 427
LweI GCATC 1 cut(s) 406
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 2 cut(s) 217, 359
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 4 cut(s) 236, 239, 261, 538
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 2 cut(s) 42, 249
MluCI AATT 1 cut(s) 475
Mly113I GGCGCC 1 cut(s) 587
MlyI GAGTC 4 cut(s) 35, 179, 327, 506
MmeI TCCRAC 4 cut(s) 154, 297, 503, 585
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 484
MspI CCGG 6 cut(s) 365, 370, 382, 492, 590, 596
MspR9I CCNGG 3 cut(s) 365, 370, 383
Mva1269I GAATGC 1 cut(s) 443
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 425
NarI GGCGCC 1 cut(s) 587
NciI CCSGG 3 cut(s) 365, 370, 383
NdeII GATC 1 cut(s) 354
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 2 cut(s) 588, 594
NmeAIII GCCGAG 1 cut(s) 534
NmuCI GTSAC 1 cut(s) 359
OliI CACNNNNGTG 1 cut(s) 410
PciSI GCTCTTC 1 cut(s) 274
PctI GAATGC 1 cut(s) 443
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 8 cut(s) 7, 194, 242, 266, 349, 380, 421, 442
PleI GAGTC 4 cut(s) 34, 178, 326, 505
PluTI GGCGCC 1 cut(s) 590
PpsI GAGTC 4 cut(s) 34, 178, 326, 505
Psp124BI GAGCTC 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 618
PspN4I GGNNCC 2 cut(s) 588, 594
PspPI GGNCC 1 cut(s) 367
PsuI RGATCY 1 cut(s) 354
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 410
SacI GAGCTC 1 cut(s) 42
SalI GTCGAC 1 cut(s) 286
SapI GCTCTTC 1 cut(s) 274
SatI GCNGC 8 cut(s) 6, 193, 241, 265, 348, 379, 420, 441
Sau3AI GATC 1 cut(s) 354
Sau96I GGNCC 1 cut(s) 367
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 4 cut(s) 35, 179, 327, 506
ScrFI CCNGG 3 cut(s) 365, 370, 383
SduI GDGCHC 2 cut(s) 42, 249
SfaNI GCATC 1 cut(s) 406
SfoI GGCGCC 1 cut(s) 588
SgrDI CGTCGACG 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 410
Sse9I AATT 1 cut(s) 475
SsiI CCGC 5 cut(s) 347, 350, 482, 506, 539
SspDI GGCGCC 1 cut(s) 586
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 3 cut(s) 363, 368, 381
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 1 cut(s) 437
TaiI ACGT 1 cut(s) 401
TaqI TCGA 2 cut(s) 105, 287
TasI AATT 1 cut(s) 475
TatI WGTACW 1 cut(s) 150
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 1 cut(s) 164
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 7 cut(s) 5, 192, 240, 264, 378, 419, 440
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 1 cut(s) 412
XapI RAATTY 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 287
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.