Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005398

Physical Location & Seq

Genomic Coordinates Reverse (-)

2521534 .. 2524390

Gene Structure 2857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G07910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGGGTGTTGCGCGAGCAATACAGCTGGTGGTTCAAAGGCTAATCGGATCTCACGCTGGCGATCTACAGGCATTGTTGGTCTCCGCGACTCCAAATTGAAGACATTTCCTGATGAAGTGATTGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGTTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTCAATCTCTCAAAGTTTTGATGCTTGATGGAAACCGCATCAGCTGTTTGCCTGATGAATTGGGCCAGTTGGTAAGGCTTGAGCAACTATCAATCTCAAGAAATATGCTCATATACTTGCCCGATACTATTGGTAGTCTCCGCAATCTACTGCTGTTGAATGTCTCAAATAACAGATTGAAATCCCTTCCTGAATCAGTAGGGAGCTGTGCTTCTTTAGAAGAAGTACAGGCTAATGATAACGTTGTTGAAGAGCTTCCTGCATCACTCTGCAATCTGATTCAGTTAAAGTCGCTTTCCTTAGACAATAATCAAGTGAACCAGATTCCAGATGGATTGCTGATACATTGCAAGAGTCTGCAAAACCTTTCTTTGCATAACAATCCTATTTCCATGGATCAGTTTCAGCTGATGGAAGGATACCAAGACTTTGAAGAGAGGAGAAAGAAGAAATTTGATAAGCAAATCGATTCGAATGTGATGATGGGCTCTAAAGCACTTGATGTAGGCGTTGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8

Protein Analysis

262

Amino Acids

29.14

Weight (kDa)

6.34

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	27 - 97	1.3e-06	Leucine-rich repeat region
LRR_8	PF13855	69 - 126	4.6e-07	Leucine rich repeat
LRR_14	PF23598	86 - 166	1.3e-11	Leucine-rich repeat region
LRR_14	PF23598	132 - 217	1.1e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07910
fragaria_vesca	FvH4_5g14250 FvH4_5g14250 FvH4_5g14250
malus_domestica	MD06G1200000.v1.1 MD14G1209200.v1.1
prunus_persica	Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1
pyrus_communis	pycom06g17670 pycom14g17300
rosa_chinensis	RchiOBHm_Chr7g0182671
rosa_laevigata	RLG00000005110
rosa_multiflora	Rmu_co8261001.1_g000001 Rmu_sc0038024.1_g000001 Rmu_sc0038137.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271080
rosa_rugosa	Rorug06G0448900 Rorug06G0449000 Rorug06G0449000 Rorug06G0449000
rosa_samantha	Rh7AG052800 Rh7BG052400 Rh7CG053900 Rh7DG052200
rosa_wichuraiana	Rw7G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	14, 87
AciI	CCGC	3 cut(s)	85, 304, 409
AclI	AACGTT	1 cut(s)	510
AclWI	GGATC	2 cut(s)	56, 672
AcsI	RAATTY	1 cut(s)	719
AfaI	GTAC	1 cut(s)	495
AgsI	TTSAA	8 cut(s)	36, 100, 125, 272, 427, 448, 518, 701
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	7 cut(s)	26, 227, 268, 312, 474, 523, 676
AluI	AGCT	7 cut(s)	26, 227, 268, 312, 474, 523, 676
Alw26I	GTCTC	3 cut(s)	86, 410, 436
AlwI	GGATC	2 cut(s)	56, 672
AlwNI	CAGNNNCTG	1 cut(s)	217
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	719
Asp700I	GAANNNNTTC	1 cut(s)	522
AspLEI	GCGC	2 cut(s)	14, 246
AspS9I	GGNCC	1 cut(s)	331
AsuC2I	CCSGG	1 cut(s)	252
AsuII	TTCGAA	1 cut(s)	740
BanII	GRGCYC	1 cut(s)	758
BbsI	GAAGAC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	4 cut(s)	290, 593, 673, 745
BciT130I	CCWGG	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	680
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	3 cut(s)	86, 410, 436
BfaI	CTAG	2 cut(s)	236, 260
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	247
BfuI	GTATCC	1 cut(s)	680
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	2 cut(s)	183, 252
BmgT120I	GGNCC	1 cut(s)	331
BmrFI	CCNGG	2 cut(s)	183, 252
BmsI	GCATC	3 cut(s)	279, 315, 539
BpiI	GAAGAC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	740
BpuEI	CTTGAG	2 cut(s)	349, 368
BpuMI	CCSGG	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	735
BsaBI	GATNNNNATC	1 cut(s)	448
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	251, 660
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	613
Bse8I	GATNNNNATC	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	183
BseCI	ATCGAT	1 cut(s)	735
BseDI	CCNNGG	2 cut(s)	251, 660
BseJI	GATNNNNATC	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	613
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	721
BseXI	GCAGC	1 cut(s)	223
Bsh1236I	CGCG	2 cut(s)	14, 87
BshFI	GGCC	1 cut(s)	333
BshVI	ATCGAT	1 cut(s)	735
BsiSI	CCGG	1 cut(s)	251
BsmAI	GTCTC	3 cut(s)	86, 410, 436
BsnI	GGCC	1 cut(s)	333
Bso31I	GGTCTC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	740
Bsp1286I	GDGCHC	1 cut(s)	758
Bsp143I	GATC	4 cut(s)	48, 62, 151, 664
Bsp19I	CCATGG	1 cut(s)	660
BspACI	CCGC	3 cut(s)	85, 304, 409
BspANI	GGCC	1 cut(s)	333
BspDI	ATCGAT	1 cut(s)	735
BspFNI	CGCG	2 cut(s)	14, 87
BspPI	GGATC	2 cut(s)	56, 672
BspQI	GCTCTTC	1 cut(s)	513
BspT104I	TTCGAA	1 cut(s)	740
BspTNI	GGTCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	613
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	2 cut(s)	251, 660
BssMI	GATC	4 cut(s)	48, 62, 151, 664
BssT1I	CCWWGG	1 cut(s)	660
Bst2UI	CCWGG	1 cut(s)	183
Bst6I	CTCTTC	2 cut(s)	513, 696
BstBI	TTCGAA	1 cut(s)	740
BstC8I	GCNNGC	2 cut(s)	16, 59
BstDEI	CTNAG	1 cut(s)	568
BstDSI	CCRYGG	1 cut(s)	660
BstFNI	CGCG	2 cut(s)	14, 87
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	2 cut(s)	14, 246
BstKTI	GATC	4 cut(s)	51, 65, 154, 667
BstMAI	GTCTC	3 cut(s)	86, 410, 436
BstMBI	GATC	4 cut(s)	48, 62, 151, 664
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	2 cut(s)	181, 250
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	2 cut(s)	14, 87
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	735
BsuI	GTATCC	1 cut(s)	680
BsuRI	GGCC	1 cut(s)	333
BsuTUI	ATCGAT	1 cut(s)	735
BtgI	CCRYGG	1 cut(s)	660
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	16, 59
CaiI	CAGNNNCTG	1 cut(s)	217
CfoI	GCGC	2 cut(s)	14, 246
Cfr13I	GGNCC	1 cut(s)	331
ClaI	ATCGAT	1 cut(s)	735
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	1 cut(s)	661
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	1 cut(s)	568
DpnI	GATC	4 cut(s)	50, 64, 153, 666
DpnII	GATC	4 cut(s)	48, 62, 151, 664
Eam1104I	CTCTTC	2 cut(s)	513, 696
EarI	CTCTTC	2 cut(s)	513, 696
Eco130I	CCWWGG	1 cut(s)	660
Eco24I	GRGCYC	1 cut(s)	758
Eco31I	GGTCTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	660
EcoT38I	GRGCYC	1 cut(s)	758
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	1 cut(s)	664
FaiI	YATR	6 cut(s)	209, 374, 380, 382, 645, 662
FatI	CATG	1 cut(s)	660
Fnu4HI	GCNGC	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	758
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	2 cut(s)	236, 260
GlaI	GCGC	2 cut(s)	13, 245
GluI	GCNGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	204
HaeII	RGCGCY	1 cut(s)	247
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	1 cut(s)	251
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	2 cut(s)	14, 246
Hin1II	CATG	1 cut(s)	664
Hin6I	GCGC	2 cut(s)	12, 244
HinP1I	GCGC	2 cut(s)	12, 244
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	7 cut(s)	89, 256, 461, 547, 592, 622, 737
HpaII	CCGG	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	2 cut(s)	48, 546
Hpy188III	TCNNGA	4 cut(s)	110, 366, 458, 596
Hpy8I	GTNNAC	1 cut(s)	586
HpyAV	CCTTC	3 cut(s)	257, 464, 677
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	6 cut(s)	211, 530, 540, 618, 628, 643
HpyF3I	CTNAG	1 cut(s)	568
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	1 cut(s)	664
HspAI	GCGC	2 cut(s)	12, 244
Kzo9I	GATC	4 cut(s)	48, 62, 151, 664
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	1 cut(s)	471
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	3 cut(s)	279, 315, 539
MaeI	CTAG	2 cut(s)	236, 260
MaeII	ACGT	1 cut(s)	510
MalI	GATC	4 cut(s)	50, 64, 153, 666
MboI	GATC	4 cut(s)	48, 62, 151, 664
MboII	GAAGA	5 cut(s)	112, 500, 530, 713, 727
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	758
MluCI	AATT	3 cut(s)	95, 326, 719
MlyI	GAGTC	2 cut(s)	83, 631
MnlI	CCTC	1 cut(s)	699
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	3 cut(s)	200, 221, 554
MspA1I	CMGCKG	3 cut(s)	26, 312, 676
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	2 cut(s)	183, 252
MvaI	CCWGG	1 cut(s)	183
MvnI	CGCG	2 cut(s)	14, 87
NciI	CCSGG	1 cut(s)	252
NcoI	CCATGG	1 cut(s)	660
NdeII	GATC	4 cut(s)	48, 62, 151, 664
NlaIII	CATG	1 cut(s)	664
NspV	TTCGAA	1 cut(s)	740
PciSI	GCTCTTC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	5 cut(s)	256, 461, 547, 592, 737
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	2 cut(s)	83, 630
PpsI	GAGTC	2 cut(s)	83, 630
Psp1406I	AACGTT	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	331
PstNI	CAGNNNCTG	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	48
PvuII	CAGCTG	3 cut(s)	26, 312, 676
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	3 cut(s)	200, 221, 554
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	4 cut(s)	48, 62, 151, 664
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	2 cut(s)	83, 631
ScrFI	CCNGG	2 cut(s)	183, 252
SduI	GDGCHC	1 cut(s)	758
SetI	ASST	9 cut(s)	28, 229, 270, 314, 476, 513, 525, 636, 678
SfaNI	GCATC	3 cut(s)	279, 315, 539
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	740
SmlI	CTYRAG	2 cut(s)	347, 364
SmoI	CTYRAG	2 cut(s)	347, 364
Sse9I	AATT	3 cut(s)	95, 326, 719
SsiI	CCGC	3 cut(s)	85, 304, 409
SspMI	CTAG	2 cut(s)	236, 260
StyD4I	CCNGG	2 cut(s)	181, 250
StyI	CCWWGG	1 cut(s)	660
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	2 cut(s)	735, 740
TasI	AATT	3 cut(s)	95, 326, 719
TatI	WGTACW	1 cut(s)	493
TfiI	GAWTC	5 cut(s)	256, 461, 547, 592, 737
Tru1I	TTAA	3 cut(s)	200, 221, 554
Tru9I	TTAA	3 cut(s)	200, 221, 554
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	129, 339
TspRI	CASTG	1 cut(s)	144
XapI	RAATTY	1 cut(s)	719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	2 cut(s)	236, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.