Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005398

Physical Location & Seq

Genomic Coordinates Reverse (-)

16220406 .. 16225350

Gene Structure 4945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G201600.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGTTGCAATTCCAGCAAAAGCGTAGACTCAAAAGCGAACAGAGCCGCCCGATGGCGATCCACCGGCATTGTTGGTTTGCGGGACTCCAAATTGAAGTCATTTCCAGATGAAATTCTTGACCTGGACAGATCAGTACGTACTCTTGACTTAACACACAACAAAATAGTTGACATTCCTATGGAAATTAGCAAATTAGTAAACCTGCAGCGACTGGTCTTAGCTCATAACCTCATTGACAGACTACCGATAAATTTGGCAAAACTAGAGTCTCTAAAAGTTATGACACTTGATGCAAATCGAGTGACTTCCTTACCTGATGAATTGGGACAGCTGGTGAGACTTGAGCAGTTATCCATCTCTGGAAATTCCTTACAATATTTGCCTGAGACTATTGGAAGTTTGCGCAATTTAAAGCTTTTAAATGTATCTAACAACAAATTAAAGTCTCTTCCAGAATCCATCGGTAGTTGCTTCTCTCTGGAAGAATTACAAGCAGATGATAATTCAATTGAAGATCTTCCTGAATCAGTCTGCAACCTTGTCCACTTAAAGGCACTTTGCTTAGACAATAATAATGTGAAGCAGATACCTACTAATCTGTTGAAAGACTGTAAAGCTCTGCAGAATATTTCCCTGCATGGAAACCCTATATCAATGGATCAGTTTCAGCAGATGGAAGGATTCCAAGAGTTTGAAGCAAGGAGGAAGAAGAAGTTTGACAAACAAATTGACTCAAATGTGATGATCAGTTCCAAAGGCCTTGATGAGGGTGTCGATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8

Protein Analysis

262

Amino Acids

29.21

Weight (kDa)

6.24

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07910
fragaria_vesca	FvH4_5g14250 FvH4_5g14250 FvH4_5g14250
malus_domestica	MD06G1200000.v1.1 MD14G1209200.v1.1
prunus_persica	Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1
pyrus_communis	pycom06g17670 pycom14g17300
rosa_chinensis	RchiOBHm_Chr7g0182671
rosa_laevigata	RLG00000005110
rosa_multiflora	Rmu_co8261001.1_g000001 Rmu_sc0038024.1_g000001 Rmu_sc0038137.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271080
rosa_rugosa	Rorug06G0448900 Rorug06G0449000 Rorug06G0449000 Rorug06G0449000
rosa_samantha	Rh7AG052800 Rh7BG052400 Rh7CG053900 Rh7DG052200
rosa_wichuraiana	Rw7G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	27
AciI	CCGC	2 cut(s)	48, 82
AclWI	GGATC	2 cut(s)	54, 669
AcsI	RAATTY	3 cut(s)	114, 253, 367
AfaI	GTAC	2 cut(s)	138, 142
AfiI	CCNNNNNNNGG	3 cut(s)	54, 553, 769
AgsI	TTSAA	5 cut(s)	97, 510, 515, 607, 698
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	4 cut(s)	224, 334, 418, 620
AluI	AGCT	4 cut(s)	224, 334, 418, 620
Alw26I	GTCTC	4 cut(s)	276, 334, 383, 453
AlwI	GGATC	2 cut(s)	54, 669
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	1 cut(s)	760
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	3 cut(s)	114, 253, 367
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
Asp700I	GAANNNNTTC	1 cut(s)	519
AspLEI	GCGC	1 cut(s)	408
AsuHPI	GGTGA	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	4 cut(s)	48, 365, 470, 670
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	1 cut(s)	747
BcoDI	GTCTC	4 cut(s)	276, 334, 383, 453
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	2 cut(s)	206, 623
BfuAI	ACCTGC	1 cut(s)	213
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	2 cut(s)	48, 209
BlsI	GCNGC	2 cut(s)	49, 210
Bme1390I	CCNGG	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	283
BpuEI	CTTGAG	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	140
BsaBI	GATNNNNATC	2 cut(s)	58, 297
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 553, 769
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	219
Bse8I	GATNNNNATC	2 cut(s)	58, 297
BseBI	CCWGG	1 cut(s)	125
BseJI	GATNNNNATC	2 cut(s)	58, 297
BseLI	CCNNNNNNNGG	3 cut(s)	54, 553, 769
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	220
BshFI	GGCC	1 cut(s)	762
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	2 cut(s)	98, 342
BslI	CCNNNNNNNGG	3 cut(s)	54, 553, 769
BsmAI	GTCTC	4 cut(s)	276, 334, 383, 453
BsmFI	GGGAC	2 cut(s)	98, 342
BsnI	GGCC	1 cut(s)	762
Bsp143I	GATC	6 cut(s)	59, 131, 517, 661, 747, 778
BspACI	CCGC	2 cut(s)	48, 82
BspANI	GGCC	1 cut(s)	762
BspCNI	CTCAG	1 cut(s)	379
BspMAI	CTGCAG	2 cut(s)	210, 627
BspMI	ACCTGC	1 cut(s)	213
BspPI	GGATC	2 cut(s)	54, 669
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	219
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	6 cut(s)	59, 131, 517, 661, 747, 778
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	614
Bst6I	CTCTTC	1 cut(s)	456
BstBAI	YACGTR	1 cut(s)	140
BstDEI	CTNAG	3 cut(s)	220, 387, 565
BstENI	CCTNNNNNAGG	1 cut(s)	767
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	6 cut(s)	62, 134, 520, 664, 750, 781
BstMAI	GTCTC	4 cut(s)	276, 334, 383, 453
BstMBI	GATC	6 cut(s)	59, 131, 517, 661, 747, 778
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 44
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	2 cut(s)	206, 623
BstSNI	TACGTA	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	762
BveI	ACCTGC	1 cut(s)	213
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	1 cut(s)	408
Cfr10I	RCCGGY	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	137, 141
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	1 cut(s)	641
CviJI	RGCY	6 cut(s)	47, 224, 334, 418, 620, 762
CviKI_1	RGCY	6 cut(s)	47, 224, 334, 418, 620, 762
CviQI	GTAC	2 cut(s)	137, 141
DdeI	CTNAG	3 cut(s)	220, 387, 565
DpnI	GATC	6 cut(s)	61, 133, 519, 663, 749, 780
DpnII	GATC	6 cut(s)	59, 131, 517, 661, 747, 778
DraI	TTTAAA	2 cut(s)	414, 423
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco105I	TACGTA	1 cut(s)	140
Eco147I	AGGCCT	1 cut(s)	762
EcoNI	CCTNNNNNAGG	1 cut(s)	767
EcoRII	CCWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	644
FaiI	YATR	5 cut(s)	182, 228, 284, 642, 653
FaqI	GGGAC	2 cut(s)	98, 342
FatI	CATG	1 cut(s)	640
FauI	CCCGC	1 cut(s)	75
FbaI	TGATCA	1 cut(s)	747
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	48, 209
Fsp4HI	GCNGC	2 cut(s)	48, 209
FspBI	CTAG	1 cut(s)	266
FspI	TGCGCA	1 cut(s)	407
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	2 cut(s)	48, 209
HaeIII	GGCC	1 cut(s)	762
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	1 cut(s)	408
Hin1II	CATG	1 cut(s)	644
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	7 cut(s)	29, 86, 269, 458, 527, 684, 734
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	4 cut(s)	28, 172, 202, 547
Hpy188III	TCNNGA	7 cut(s)	107, 119, 146, 363, 455, 482, 524
Hpy8I	GTNNAC	4 cut(s)	28, 172, 202, 547
HpyAV	CCTTC	1 cut(s)	674
HpyCH4III	ACNGT	1 cut(s)	614
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	6 cut(s)	9, 208, 296, 537, 625, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 44
HpyF3I	CTNAG	3 cut(s)	220, 387, 565
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	1 cut(s)	644
HspAI	GCGC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	747
Kzo9I	GATC	6 cut(s)	59, 131, 517, 661, 747, 778
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	6 cut(s)	61, 133, 519, 663, 749, 780
MboI	GATC	6 cut(s)	59, 131, 517, 661, 747, 778
MboII	GAAGA	6 cut(s)	443, 497, 512, 527, 721, 724
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	1 cut(s)	517
MlyI	GAGTC	4 cut(s)	23, 80, 278, 728
MnlI	CCTC	3 cut(s)	242, 699, 763
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	5 cut(s)	152, 413, 422, 443, 551
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	125
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	15, 44
NdeII	GATC	6 cut(s)	59, 131, 517, 661, 747, 778
NlaIII	CATG	1 cut(s)	644
NmuCI	GTSAC	1 cut(s)	304
NsbI	TGCGCA	1 cut(s)	407
PceI	AGGCCT	1 cut(s)	762
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	458, 527, 684
PkrI	GCNGC	2 cut(s)	49, 210
PleI	GAGTC	4 cut(s)	23, 80, 277, 728
PpsI	GAGTC	4 cut(s)	23, 80, 277, 728
Ppu21I	YACGTR	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PstI	CTGCAG	2 cut(s)	210, 627
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	517
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	138, 142
RsaNI	GTAC	2 cut(s)	137, 141
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	5 cut(s)	152, 413, 422, 443, 551
SatI	GCNGC	2 cut(s)	48, 209
Sau3AI	GATC	6 cut(s)	59, 131, 517, 661, 747, 778
SchI	GAGTC	4 cut(s)	23, 80, 278, 728
ScrFI	CCNGG	1 cut(s)	125
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	2 cut(s)	206, 623
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SnaBI	TACGTA	1 cut(s)	140
SseBI	AGGCCT	1 cut(s)	762
SsiI	CCGC	2 cut(s)	48, 82
SspI	AATATT	2 cut(s)	380, 631
SspMI	CTAG	1 cut(s)	266
StuI	AGGCCT	1 cut(s)	762
StyD4I	CCNGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	614
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	301, 777
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	3 cut(s)	458, 527, 684
Tru1I	TTAA	5 cut(s)	152, 413, 422, 443, 551
Tru9I	TTAA	5 cut(s)	152, 413, 422, 443, 551
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	126, 336
XagI	CCTNNNNNAGG	1 cut(s)	767
XapI	RAATTY	3 cut(s)	114, 253, 367
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.