Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0005398

Physical Location & Seq

Genomic Coordinates Reverse (-)

33349706 .. 33353529

Gene Structure 3824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1200000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGTTGCGTTACCAGCAAAAACGCGGATTCGAAAGCGAGCAGGGCCGCCCGGTGGCGATCCACCGGCATTGTTGGCCTCCGCGACTCCAAACTGAAGGCAATTTCTCTCTCAATCTCTACATTTCCAGCTGAAGTTCTCGACATGGACAGGTCCATACGTACTATCGATCTAACAAACAATAAAATAGTGGGACAGTTGGTCAGACTTGAGCAGTTATCCATCTCCGGAAATTCATTAGAGTCTTTGCCTGCGACTATTGGAAGCTTGCGGAATTTAAAGCTTTTAAATGTATCGAAGAACAAGTTAAAGTCTCTTCCGGAATCCATTGGAAGTTGCTTCTCTCTGGAAGAATTACAAGCTGATGATAATTCAATAGACGAACTTCCTGAGTCAGTCTGCAACCTTATCCACGTAAAGTCGTTTTGCTTGGACAATAATAATGTGAAAAAGATACCCACTAATCTGTTGAAAGACTGTAAAGCGCTGCAGAATATTTCCCTCCATGGAAACCCTATTTCCATGGATCAGTTTCAGCAGATGGAAGGATTTCAAGAGTTTGAAGCGAGAAGGAAGAAGAAGTTCGACAAACAAATTGACTCAAATGTGATGATCAGTTCCAAAGGCCTTGATGAGGGTATCGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8

Protein Analysis

217

Amino Acids

23.88

Weight (kDa)

8.24

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	38 - 121	8.2e-10	Leucine-rich repeat region
LRR_8	PF13855	69 - 126	1.8e-07	Leucine rich repeat
LRR_14	PF23598	106 - 201	4.2e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07910
fragaria_vesca	FvH4_5g14250 FvH4_5g14250 FvH4_5g14250
malus_domestica	MD06G1200000.v1.1 MD14G1209200.v1.1
prunus_persica	Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1
pyrus_communis	pycom06g17670 pycom14g17300
rosa_chinensis	RchiOBHm_Chr7g0182671
rosa_laevigata	RLG00000005110
rosa_multiflora	Rmu_co8261001.1_g000001 Rmu_sc0038024.1_g000001 Rmu_sc0038137.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271080
rosa_rugosa	Rorug06G0448900 Rorug06G0449000 Rorug06G0449000 Rorug06G0449000
rosa_samantha	Rh7AG052800 Rh7BG052400 Rh7CG053900 Rh7DG052200
rosa_wichuraiana	Rw7G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	26, 84
AccIII	TCCGGA	2 cut(s)	227, 319
AciI	CCGC	4 cut(s)	26, 48, 82, 271
AclWI	GGATC	2 cut(s)	54, 534
AcsI	RAATTY	2 cut(s)	232, 274
AcuI	CTGAAG	2 cut(s)	116, 153
AfaI	GTAC	1 cut(s)	163
AfeI	AGCGCT	1 cut(s)	486
AfiI	CCNNNNNNNGG	2 cut(s)	54, 634
AgsI	TTSAA	4 cut(s)	375, 472, 554, 563
AhdI	GACNNNNNGTC	1 cut(s)	200
AluBI	AGCT	4 cut(s)	131, 267, 283, 362
AluI	AGCT	4 cut(s)	131, 267, 283, 362
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	2 cut(s)	54, 534
Aor13HI	TCCGGA	2 cut(s)	227, 319
Aor51HI	AGCGCT	1 cut(s)	486
AoxI	GGCC	3 cut(s)	45, 76, 625
ApeKI	GCWGC	1 cut(s)	487
ApoI	RAATTY	2 cut(s)	232, 274
Asp700I	GAANNNNTTC	2 cut(s)	549, 581
AspLEI	GCGC	1 cut(s)	487
AspS9I	GGNCC	2 cut(s)	45, 153
AsuC2I	CCSGG	1 cut(s)	52
AsuII	TTCGAA	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	474
BccI	CCATC	2 cut(s)	230, 535
BclI	TGATCA	1 cut(s)	612
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	488
BfoI	RGCGCY	1 cut(s)	488
BisI	GCNGC	2 cut(s)	48, 488
BlsI	GCNGC	2 cut(s)	49, 489
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	153
BmeRI	GACNNNNNGTC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	45, 153
BmrFI	CCNGG	1 cut(s)	52
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	52
Bsa29I	ATCGAT	2 cut(s)	168, 642
BsaAI	YACGTR	2 cut(s)	161, 415
BsaJI	CCNNGG	2 cut(s)	505, 522
BsaWI	WCCGGW	2 cut(s)	227, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 634
Bse118I	RCCGGY	1 cut(s)	65
BseAI	TCCGGA	2 cut(s)	227, 319
BseCI	ATCGAT	2 cut(s)	168, 642
BseDI	CCNNGG	2 cut(s)	505, 522
BseLI	CCNNNNNNNGG	2 cut(s)	54, 634
BseMII	CTCAG	1 cut(s)	381
BseXI	GCAGC	1 cut(s)	474
Bsh1236I	CGCG	2 cut(s)	26, 84
BshFI	GGCC	3 cut(s)	47, 78, 627
BshVI	ATCGAT	2 cut(s)	168, 642
BsiSI	CCGG	4 cut(s)	52, 66, 228, 320
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	54, 634
BsmAI	GTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	3 cut(s)	47, 78, 627
Bsp119I	TTCGAA	1 cut(s)	32
Bsp13I	TCCGGA	2 cut(s)	227, 319
Bsp143I	GATC	5 cut(s)	59, 169, 526, 612, 643
Bsp19I	CCATGG	2 cut(s)	505, 522
BspACI	CCGC	4 cut(s)	26, 48, 82, 271
BspANI	GGCC	3 cut(s)	47, 78, 627
BspCNI	CTCAG	1 cut(s)	382
BspDI	ATCGAT	2 cut(s)	168, 642
BspEI	TCCGGA	2 cut(s)	227, 319
BspFNI	CGCG	2 cut(s)	26, 84
BspMAI	CTGCAG	1 cut(s)	492
BspPI	GGATC	2 cut(s)	54, 534
BspT104I	TTCGAA	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	505, 522
BssMI	GATC	5 cut(s)	59, 169, 526, 612, 643
BssT1I	CCWWGG	2 cut(s)	505, 522
Bst4CI	ACNGT	2 cut(s)	198, 479
Bst6I	CTCTTC	1 cut(s)	321
BstBAI	YACGTR	2 cut(s)	161, 415
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	3 cut(s)	40, 252, 269
BstDEI	CTNAG	1 cut(s)	390
BstDSI	CCRYGG	2 cut(s)	505, 522
BstENI	CCTNNNNNAGG	1 cut(s)	632
BstFNI	CGCG	2 cut(s)	26, 84
BstH2I	RGCGCY	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	5 cut(s)	62, 172, 529, 615, 646
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	5 cut(s)	59, 169, 526, 612, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 44, 75
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	488
BstSNI	TACGTA	1 cut(s)	161
BstUI	CGCG	2 cut(s)	26, 84
BstV1I	GCAGC	1 cut(s)	474
Bsu15I	ATCGAT	2 cut(s)	168, 642
BsuRI	GGCC	3 cut(s)	47, 78, 627
BsuTUI	ATCGAT	2 cut(s)	168, 642
BtgI	CCRYGG	2 cut(s)	505, 522
Cac8I	GCNNGC	3 cut(s)	40, 252, 269
CfoI	GCGC	1 cut(s)	487
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	45, 153
ClaI	ATCGAT	2 cut(s)	168, 642
Csp6I	GTAC	1 cut(s)	162
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	3 cut(s)	145, 506, 523
CviJI	RGCY	7 cut(s)	47, 78, 131, 267, 283, 362, 627
CviKI_1	RGCY	7 cut(s)	47, 78, 131, 267, 283, 362, 627
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	5 cut(s)	61, 171, 528, 614, 645
DpnII	GATC	5 cut(s)	59, 169, 526, 612, 643
DraI	TTTAAA	2 cut(s)	279, 288
DriI	GACNNNNNGTC	1 cut(s)	200
Eam1104I	CTCTTC	1 cut(s)	321
Eam1105I	GACNNNNNGTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	321
Eco105I	TACGTA	1 cut(s)	161
Eco130I	CCWWGG	2 cut(s)	505, 522
Eco147I	AGGCCT	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	153
Eco47III	AGCGCT	1 cut(s)	486
Eco57I	CTGAAG	2 cut(s)	116, 153
EcoNI	CCTNNNNNAGG	1 cut(s)	632
EcoT14I	CCWWGG	2 cut(s)	505, 522
ErhI	CCWWGG	2 cut(s)	505, 522
FaeI	CATG	3 cut(s)	148, 509, 526
FaiI	YATR	4 cut(s)	146, 158, 507, 524
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	3 cut(s)	144, 505, 522
FbaI	TGATCA	1 cut(s)	612
Fnu4HI	GCNGC	2 cut(s)	48, 488
Fsp4HI	GCNGC	2 cut(s)	48, 488
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	2 cut(s)	48, 488
HaeII	RGCGCY	1 cut(s)	488
HaeIII	GGCC	3 cut(s)	47, 78, 627
HapII	CCGG	4 cut(s)	52, 66, 228, 320
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	3 cut(s)	148, 509, 526
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HindIII	AAGCTT	2 cut(s)	265, 281
HinfI	GANTC	6 cut(s)	29, 86, 242, 323, 392, 599
HpaII	CCGG	4 cut(s)	52, 66, 228, 320
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	6 cut(s)	140, 228, 320, 347, 389, 554
HpyAV	CCTTC	3 cut(s)	91, 539, 564
HpyCH4III	ACNGT	2 cut(s)	198, 479
HpyCH4IV	ACGT	2 cut(s)	160, 414
HpyCH4V	TGCA	2 cut(s)	402, 490
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 44, 75
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	2 cut(s)	160, 414
Hsp92II	CATG	3 cut(s)	148, 509, 526
HspAI	GCGC	1 cut(s)	485
Kpn2I	TCCGGA	2 cut(s)	227, 319
Ksp22I	TGATCA	1 cut(s)	612
Kzo9I	GATC	5 cut(s)	59, 169, 526, 612, 643
Lsp1109I	GCAGC	1 cut(s)	474
MaeII	ACGT	2 cut(s)	160, 414
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	5 cut(s)	61, 171, 528, 614, 645
MboI	GATC	5 cut(s)	59, 169, 526, 612, 643
MboII	GAAGA	5 cut(s)	308, 310, 362, 586, 589
MluCI	AATT	6 cut(s)	102, 232, 274, 353, 370, 594
MlyI	GAGTC	4 cut(s)	80, 251, 401, 593
MnlI	CCTC	3 cut(s)	89, 512, 628
MroI	TCCGGA	2 cut(s)	227, 319
MroXI	GAANNNNTTC	2 cut(s)	549, 581
MseI	TTAA	3 cut(s)	278, 287, 308
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	4 cut(s)	52, 66, 228, 320
MspR9I	CCNGG	1 cut(s)	52
MvnI	CGCG	2 cut(s)	26, 84
MwoI	GCNNNNNNNGC	3 cut(s)	15, 44, 75
NciI	CCSGG	1 cut(s)	52
NcoI	CCATGG	2 cut(s)	505, 522
NdeII	GATC	5 cut(s)	59, 169, 526, 612, 643
NlaIII	CATG	3 cut(s)	148, 509, 526
NspV	TTCGAA	1 cut(s)	32
PceI	AGGCCT	1 cut(s)	627
PdmI	GAANNNNTTC	2 cut(s)	549, 581
PfeI	GAWTC	2 cut(s)	29, 323
PkrI	GCNGC	2 cut(s)	49, 489
PleI	GAGTC	4 cut(s)	80, 250, 400, 593
PpsI	GAGTC	4 cut(s)	80, 250, 400, 593
Ppu21I	YACGTR	2 cut(s)	161, 415
PspPI	GGNCC	2 cut(s)	45, 153
PstI	CTGCAG	1 cut(s)	492
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	278, 287, 308
SatI	GCNGC	2 cut(s)	48, 488
Sau3AI	GATC	5 cut(s)	59, 169, 526, 612, 643
Sau96I	GGNCC	2 cut(s)	45, 153
SchI	GAGTC	4 cut(s)	80, 251, 401, 593
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	8 cut(s)	133, 155, 163, 269, 285, 364, 408, 417
SfcI	CTRYAG	1 cut(s)	488
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SnaBI	TACGTA	1 cut(s)	161
Sse9I	AATT	6 cut(s)	102, 232, 274, 353, 370, 594
SseBI	AGGCCT	1 cut(s)	627
SsiI	CCGC	4 cut(s)	26, 48, 82, 271
SspI	AATATT	1 cut(s)	496
StuI	AGGCCT	1 cut(s)	627
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	2 cut(s)	505, 522
TaaI	ACNGT	2 cut(s)	198, 479
TaiI	ACGT	2 cut(s)	163, 417
TaqI	TCGA	6 cut(s)	32, 141, 168, 296, 585, 642
TasI	AATT	6 cut(s)	102, 232, 274, 353, 370, 594
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	29, 323
Tru1I	TTAA	3 cut(s)	278, 287, 308
Tru9I	TTAA	3 cut(s)	278, 287, 308
TseI	GCWGC	1 cut(s)	487
TspDTI	ATGAA	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	153
XagI	CCTNNNNNAGG	1 cut(s)	632
XapI	RAATTY	2 cut(s)	232, 274
XmnI	GAANNNNTTC	2 cut(s)	549, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.