Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038024.1

Orthogroup ID

OG0005398

Physical Location & Seq

Genomic Coordinates Forward (+)

364 .. 1139

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038024.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgatttcggttgcttcagataattcaattgaagatcttcccgaatccgtctgcaatcttgttcacttaaagtcactttgcttggacaataataatgtgaagcagatacctaccaatctattgaaagactgtaaagctctgcagaatatttccttgcatggaaatcctatatcaatggatcagtttcagcaaatggaaggattccaagagtttgaagcaaggaggaagaagaagttcgacaaacagattgactcaaatgtaatgatcagttccaaaggccttgatgagggtgttgatcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8

Protein Analysis

100

Amino Acids

11.28

Weight (kDa)

5.22

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07910
fragaria_vesca	FvH4_5g14250 FvH4_5g14250 FvH4_5g14250
malus_domestica	MD06G1200000.v1.1 MD14G1209200.v1.1
prunus_persica	Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1
pyrus_communis	pycom06g17670 pycom14g17300
rosa_chinensis	RchiOBHm_Chr7g0182671
rosa_laevigata	RLG00000005110
rosa_multiflora	Rmu_co8261001.1_g000001 Rmu_sc0038024.1_g000001 Rmu_sc0038137.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271080
rosa_rugosa	Rorug06G0448900 Rorug06G0449000 Rorug06G0449000 Rorug06G0449000
rosa_samantha	Rh7AG052800 Rh7BG052400 Rh7CG053900 Rh7DG052200
rosa_wichuraiana	Rw7G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	4 cut(s)	27, 32, 124, 215
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	1 cut(s)	277
Asp700I	GAANNNNTTC	2 cut(s)	36, 233
BclI	TGATCA	2 cut(s)	264, 295
BfmI	CTRYAG	1 cut(s)	140
BglII	AGATCT	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	286
BshFI	GGCC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	286
BsnI	GGCC	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	34, 178, 264, 295
BspANI	GGCC	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	144
BspPI	GGATC	1 cut(s)	186
BssMI	GATC	4 cut(s)	34, 178, 264, 295
Bst4CI	ACNGT	1 cut(s)	131
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstKTI	GATC	4 cut(s)	37, 181, 267, 298
BstMBI	GATC	4 cut(s)	34, 178, 264, 295
BstSFI	CTRYAG	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	279
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	2 cut(s)	137, 279
CviKI_1	RGCY	2 cut(s)	137, 279
DpnI	GATC	4 cut(s)	36, 180, 266, 297
DpnII	GATC	4 cut(s)	34, 178, 264, 295
Eco147I	AGGCCT	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	284
FaeI	CATG	1 cut(s)	161
FaiI	YATR	2 cut(s)	159, 170
FatI	CATG	1 cut(s)	157
FbaI	TGATCA	2 cut(s)	264, 295
HaeIII	GGCC	1 cut(s)	279
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	3 cut(s)	44, 201, 251
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	3 cut(s)	54, 142, 157
Hsp92II	CATG	1 cut(s)	161
Ksp22I	TGATCA	2 cut(s)	264, 295
Kzo9I	GATC	4 cut(s)	34, 178, 264, 295
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	4 cut(s)	36, 180, 266, 297
MboI	GATC	4 cut(s)	34, 178, 264, 295
MboII	GAAGA	4 cut(s)	29, 44, 238, 241
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	34
MluCI	AATT	2 cut(s)	22, 27
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	2 cut(s)	216, 280
MroXI	GAANNNNTTC	2 cut(s)	36, 233
MseI	TTAA	1 cut(s)	68
MunI	CAATTG	1 cut(s)	27
NdeII	GATC	4 cut(s)	34, 178, 264, 295
NlaIII	CATG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	279
PdmI	GAANNNNTTC	2 cut(s)	36, 233
PfeI	GAWTC	2 cut(s)	44, 201
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PstI	CTGCAG	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	68
Sau3AI	GATC	4 cut(s)	34, 178, 264, 295
SchI	GAGTC	1 cut(s)	245
SetI	ASST	2 cut(s)	112, 139
SfcI	CTRYAG	1 cut(s)	140
SgeI	CNNG	8 cut(s)	53, 71, 94, 166, 170, 218, 231, 293
Sse9I	AATT	2 cut(s)	22, 27
SseBI	AGGCCT	1 cut(s)	279
SspI	AATATT	1 cut(s)	148
StuI	AGGCCT	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	22, 27
TfiI	GAWTC	2 cut(s)	44, 201
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	72
Tsp45I	GTSAC	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	284
XmnI	GAANNNNTTC	2 cut(s)	36, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.