Rh7CG053900

Plant intracellular Ras-group-related LRR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005398
Physical Location & Seq
Reverse (-)
3914319 .. 3917181
2863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG053900.1

Sequence Viewer

Length: 786 bp
ATGGGTTGCACGTCGAGCAAAAGCGTGGACTCGAAGACGAGCAGGACGGCGCGGTGGCGATCCACCGGCATTGTTGGTCTCCGGGACTCTAAATTGAAGACATTTCCAGATGAAGTTCTTGATCTGGAGAGATCCGTACGCACTATTGATCTAACGCGCAATAAAATTGTTGAAATTCCTATGGATATTGGCAAGTTAGTAAACCTGCAACGACTGGTCTTAGCTGAAAACCTCATTGATCGATTACCAATGCATGTGTCAAAATTAGAATCTCTAAAAGTTATGACACTTGATGCAAATCGAATCACTTCCTTGCCTGATGAATTGGGACAGCTGGTGAGGCTTGAGCGGTTATCCATCTCTAAAAATTCTCTATCATATTTGCCTGAGACTATTGGAAGCTTGCGCAATTTAGTGCTGTTAAATGTATCAAACAACAAGTTAAAGTCTCTTCCAGAATCAGTTGGGAGTTGCTTCTCTCTAGAAGAATTACAAGCAGATGATAATTCAATTGAAGATCTTCCCGAATCCGTCTGCAATCTTGTTCACTTAAAGTCACTTTGCTTGGACAATAATAATGTGAAGCAGATACCTACCAATCTATTGAAAGACTGTAAAGCTCTGCAGAATATTTCCTTGCATGGAAATCCTATATCAATGGATCAGTTTCAGCAAATGGAAGGATTCCAAGAGTTTGAAGCAAGGAGGAAGAAGAAGTTCGACAAACAGATTGACTCAAATGTAATGATCAGTTCCAAAGGCCTTGATGAGGGTGTTGATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8

Protein Analysis

261

Amino Acids

29.32

Weight (kDa)

6.46

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 27 - 95 1.2e-06 Leucine-rich repeat region
LRR_8 PF13855 44 - 102 3.5e-08 Leucine rich repeat
LRR_14 PF23598 85 - 165 5.1e-13 Leucine-rich repeat region
LRR_8 PF13855 91 - 148 3.2e-09 Leucine rich repeat
LRR_14 PF23598 141 - 245 1.6e-08 Leucine-rich repeat region
LRR_8 PF13855 160 - 218 1.4e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 407
Acc36I ACCTGC 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 349
AccII CGCG 2 cut(s) 52, 157
AciI CCGC 2 cut(s) 52, 349
AclWI GGATC 3 cut(s) 54, 126, 669
AcsI RAATTY 2 cut(s) 174, 367
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 769
AgsI TTSAA 6 cut(s) 97, 173, 510, 515, 607, 698
AjiI CACGTC 1 cut(s) 12
AluBI AGCT 4 cut(s) 224, 334, 402, 620
AluI AGCT 4 cut(s) 224, 334, 402, 620
Alw26I GTCTC 3 cut(s) 83, 383, 453
AlwI GGATC 3 cut(s) 54, 126, 669
AoxI GGCC 1 cut(s) 760
ApoI RAATTY 2 cut(s) 174, 367
Asp700I GAANNNNTTC 3 cut(s) 307, 519, 716
AspLEI GCGC 3 cut(s) 52, 159, 408
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 349
BbsI GAAGAC 2 cut(s) 41, 104
BccI CCATC 1 cut(s) 365
BceAI ACGGC 1 cut(s) 63
BclI TGATCA 2 cut(s) 747, 778
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 3 cut(s) 83, 383, 453
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 1 cut(s) 623
BfuAI ACCTGC 1 cut(s) 213
BglII AGATCT 1 cut(s) 517
Bme1390I CCNGG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 283
BpiI GAAGAC 2 cut(s) 41, 104
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 241
BsaBI GATNNNNATC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 769
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 297
BseCI ATCGAT 1 cut(s) 241
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 769
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 1 cut(s) 219
Bsh1236I CGCG 2 cut(s) 52, 157
BshFI GGCC 1 cut(s) 762
BshVI ATCGAT 1 cut(s) 241
BsiSI CCGG 2 cut(s) 66, 82
BsiWI CGTACG 1 cut(s) 136
BslFI GGGAC 2 cut(s) 98, 342
BslI CCNNNNNNNGG 1 cut(s) 769
BsmAI GTCTC 3 cut(s) 83, 383, 453
BsmFI GGGAC 2 cut(s) 98, 342
BsnI GGCC 1 cut(s) 762
Bso31I GGTCTC 1 cut(s) 83
Bsp143I GATC 9 cut(s) 59, 121, 131, 148, 238, 517, 661, 747, 778
BspACI CCGC 2 cut(s) 52, 349
BspANI GGCC 1 cut(s) 762
BspCNI CTCAG 1 cut(s) 379
BspDI ATCGAT 1 cut(s) 241
BspFNI CGCG 2 cut(s) 52, 157
BspMAI CTGCAG 1 cut(s) 627
BspMI ACCTGC 1 cut(s) 213
BspPI GGATC 3 cut(s) 54, 126, 669
BspTNI GGTCTC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 65
BssMI GATC 9 cut(s) 59, 121, 131, 148, 238, 517, 661, 747, 778
Bst4CI ACNGT 1 cut(s) 614
Bst6I CTCTTC 1 cut(s) 456
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 2 cut(s) 220, 387
BstENI CCTNNNNNAGG 1 cut(s) 767
BstFNI CGCG 2 cut(s) 52, 157
BstHHI GCGC 3 cut(s) 52, 159, 408
BstKTI GATC 9 cut(s) 62, 124, 134, 151, 241, 520, 664, 750, 781
BstMAI GTCTC 3 cut(s) 83, 383, 453
BstMBI GATC 9 cut(s) 59, 121, 131, 148, 238, 517, 661, 747, 778
BstMWI GCNNNNNNNGC 2 cut(s) 15, 340
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 623
BstUI CGCG 2 cut(s) 52, 157
BstV2I GAAGAC 2 cut(s) 41, 104
BstX2I RGATCY 2 cut(s) 131, 517
BstYI RGATCY 2 cut(s) 131, 517
Bsu15I ATCGAT 1 cut(s) 241
BsuRI GGCC 1 cut(s) 762
BsuTUI ATCGAT 1 cut(s) 241
BtrI CACGTC 1 cut(s) 12
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 404
CfoI GCGC 3 cut(s) 52, 159, 408
Cfr10I RCCGGY 1 cut(s) 65
ClaI ATCGAT 1 cut(s) 241
Csp6I GTAC 1 cut(s) 137
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 2 cut(s) 254, 641
CviJI RGCY 6 cut(s) 224, 334, 343, 402, 620, 762
CviKI_1 RGCY 6 cut(s) 224, 334, 343, 402, 620, 762
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 2 cut(s) 220, 387
DpnI GATC 9 cut(s) 61, 123, 133, 150, 240, 519, 663, 749, 780
DpnII GATC 9 cut(s) 59, 121, 131, 148, 238, 517, 661, 747, 778
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco147I AGGCCT 1 cut(s) 762
Eco31I GGTCTC 1 cut(s) 83
EcoNI CCTNNNNNAGG 1 cut(s) 767
EcoT22I ATGCAT 1 cut(s) 255
FaeI CATG 2 cut(s) 257, 644
FaiI YATR 6 cut(s) 182, 255, 284, 379, 642, 653
FaqI GGGAC 2 cut(s) 98, 342
FatI CATG 2 cut(s) 253, 640
FbaI TGATCA 2 cut(s) 747, 778
FspBI CTAG 1 cut(s) 482
FspI TGCGCA 1 cut(s) 407
GlaI GCGC 3 cut(s) 51, 158, 407
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 1 cut(s) 762
HapII CCGG 2 cut(s) 66, 82
HhaI GCGC 3 cut(s) 52, 159, 408
Hin1II CATG 2 cut(s) 257, 644
Hin6I GCGC 3 cut(s) 50, 157, 406
HinP1I GCGC 3 cut(s) 50, 157, 406
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 8 cut(s) 29, 86, 269, 303, 458, 527, 684, 734
HpaII CCGG 2 cut(s) 66, 82
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 3 cut(s) 28, 202, 547
Hpy188III TCNNGA 6 cut(s) 107, 119, 125, 455, 482, 524
Hpy8I GTNNAC 3 cut(s) 28, 202, 547
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 674
HpyCH4III ACNGT 1 cut(s) 614
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 7 cut(s) 9, 208, 253, 296, 537, 625, 640
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 340
HpyF3I CTNAG 2 cut(s) 220, 387
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 2 cut(s) 257, 644
HspAI GCGC 3 cut(s) 50, 157, 406
Ksp22I TGATCA 2 cut(s) 747, 778
Kzo9I GATC 9 cut(s) 59, 121, 131, 148, 238, 517, 661, 747, 778
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 482
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 555
MalI GATC 9 cut(s) 61, 123, 133, 150, 240, 519, 663, 749, 780
MbiI CCGCTC 1 cut(s) 349
MboI GATC 9 cut(s) 59, 121, 131, 148, 238, 517, 661, 747, 778
MboII GAAGA 8 cut(s) 46, 109, 443, 497, 512, 527, 721, 724
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 2 cut(s) 131, 517
MlyI GAGTC 3 cut(s) 23, 80, 728
MnlI CCTC 4 cut(s) 242, 333, 699, 763
Mph1103I ATGCAT 1 cut(s) 255
MroXI GAANNNNTTC 3 cut(s) 307, 519, 716
MseI TTAA 3 cut(s) 422, 443, 551
MspA1I CMGCKG 1 cut(s) 334
MspI CCGG 2 cut(s) 66, 82
MspR9I CCNGG 1 cut(s) 83
MunI CAATTG 1 cut(s) 510
MvnI CGCG 2 cut(s) 52, 157
MwoI GCNNNNNNNGC 2 cut(s) 15, 340
NciI CCSGG 1 cut(s) 83
NdeII GATC 9 cut(s) 59, 121, 131, 148, 238, 517, 661, 747, 778
NlaIII CATG 2 cut(s) 257, 644
NmuCI GTSAC 1 cut(s) 555
NsbI TGCGCA 1 cut(s) 407
NsiI ATGCAT 1 cut(s) 255
NspI RCATGY 1 cut(s) 257
PceI AGGCCT 1 cut(s) 762
PdmI GAANNNNTTC 3 cut(s) 307, 519, 716
PfeI GAWTC 5 cut(s) 269, 303, 458, 527, 684
Pfl23II CGTACG 1 cut(s) 136
PfoI TCCNGGA 1 cut(s) 81
PleI GAGTC 3 cut(s) 23, 80, 728
PpsI GAGTC 3 cut(s) 23, 80, 728
PspLI CGTACG 1 cut(s) 136
PstI CTGCAG 1 cut(s) 627
PsuI RGATCY 2 cut(s) 131, 517
PvuII CAGCTG 1 cut(s) 334
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 3 cut(s) 422, 443, 551
Sau3AI GATC 9 cut(s) 59, 121, 131, 148, 238, 517, 661, 747, 778
SchI GAGTC 3 cut(s) 23, 80, 728
ScrFI CCNGG 1 cut(s) 83
SetI ASST 8 cut(s) 14, 207, 226, 234, 336, 404, 595, 622
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SseBI AGGCCT 1 cut(s) 762
SsiI CCGC 2 cut(s) 52, 349
SspI AATATT 1 cut(s) 631
SspMI CTAG 1 cut(s) 482
StuI AGGCCT 1 cut(s) 762
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 614
TaiI ACGT 1 cut(s) 14
TaqI TCGA 5 cut(s) 14, 32, 241, 301, 720
TfiI GAWTC 5 cut(s) 269, 303, 458, 527, 684
Tru1I TTAA 3 cut(s) 422, 443, 551
Tru9I TTAA 3 cut(s) 422, 443, 551
TseFI GTSAC 1 cut(s) 555
Tsp45I GTSAC 1 cut(s) 555
TspDTI ATGAA 2 cut(s) 126, 336
TspGWI ACGGA 2 cut(s) 124, 520
XagI CCTNNNNNAGG 1 cut(s) 767
XapI RAATTY 2 cut(s) 174, 367
XbaI TCTAGA 1 cut(s) 481
XceI RCATGY 1 cut(s) 257
XmnI GAANNNNTTC 3 cut(s) 307, 519, 716
XspI CTAG 1 cut(s) 482
Zsp2I ATGCAT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.