Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8261001.1

Orthogroup ID

OG0005398

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 774

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8261001.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgatttcggttgcttcagataattcaattgaagatcttcccgaatccgtctgcaatcttgttcacttaaagtcactttgcttggacaataataatgtgaagcagatacctaccaatctattgaaagactgtaaagctctgcagaatatttccttgcatggaaatcctatatcaatggatcagtttcagcaaatggaaggattccaagagtttgaagcaaggaggaagaagaagttcgacaaacagattgactcaaatgtaatgatcagttccaaaggccttgatgagggtgttgatcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8

Protein Analysis

100

Amino Acids

11.28

Weight (kDa)

5.22

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07910
fragaria_vesca	FvH4_5g14250 FvH4_5g14250 FvH4_5g14250
malus_domestica	MD06G1200000.v1.1 MD14G1209200.v1.1
prunus_persica	Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1
pyrus_communis	pycom06g17670 pycom14g17300
rosa_chinensis	RchiOBHm_Chr7g0182671
rosa_laevigata	RLG00000005110
rosa_multiflora	Rmu_co8261001.1_g000001 Rmu_sc0038024.1_g000001 Rmu_sc0038137.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271080
rosa_rugosa	Rorug06G0448900 Rorug06G0449000 Rorug06G0449000 Rorug06G0449000
rosa_samantha	Rh7AG052800 Rh7BG052400 Rh7CG053900 Rh7DG052200
rosa_wichuraiana	Rw7G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	4 cut(s)	27, 32, 124, 215
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	1 cut(s)	277
Asp700I	GAANNNNTTC	2 cut(s)	36, 233
BclI	TGATCA	2 cut(s)	264, 295
BfmI	CTRYAG	1 cut(s)	140
BglII	AGATCT	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	286
BshFI	GGCC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	286
BsnI	GGCC	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	34, 178, 264, 295
BspANI	GGCC	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	144
BspPI	GGATC	1 cut(s)	186
BssMI	GATC	4 cut(s)	34, 178, 264, 295
Bst4CI	ACNGT	1 cut(s)	131
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstKTI	GATC	4 cut(s)	37, 181, 267, 298
BstMBI	GATC	4 cut(s)	34, 178, 264, 295
BstSFI	CTRYAG	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	279
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	2 cut(s)	137, 279
CviKI_1	RGCY	2 cut(s)	137, 279
DpnI	GATC	4 cut(s)	36, 180, 266, 297
DpnII	GATC	4 cut(s)	34, 178, 264, 295
Eco147I	AGGCCT	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	284
FaeI	CATG	1 cut(s)	161
FaiI	YATR	2 cut(s)	159, 170
FatI	CATG	1 cut(s)	157
FbaI	TGATCA	2 cut(s)	264, 295
HaeIII	GGCC	1 cut(s)	279
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	3 cut(s)	44, 201, 251
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	3 cut(s)	54, 142, 157
Hsp92II	CATG	1 cut(s)	161
Ksp22I	TGATCA	2 cut(s)	264, 295
Kzo9I	GATC	4 cut(s)	34, 178, 264, 295
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	4 cut(s)	36, 180, 266, 297
MboI	GATC	4 cut(s)	34, 178, 264, 295
MboII	GAAGA	4 cut(s)	29, 44, 238, 241
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	34
MluCI	AATT	2 cut(s)	22, 27
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	2 cut(s)	216, 280
MroXI	GAANNNNTTC	2 cut(s)	36, 233
MseI	TTAA	1 cut(s)	68
MunI	CAATTG	1 cut(s)	27
NdeII	GATC	4 cut(s)	34, 178, 264, 295
NlaIII	CATG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	279
PdmI	GAANNNNTTC	2 cut(s)	36, 233
PfeI	GAWTC	2 cut(s)	44, 201
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PstI	CTGCAG	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	68
Sau3AI	GATC	4 cut(s)	34, 178, 264, 295
SchI	GAGTC	1 cut(s)	245
SetI	ASST	2 cut(s)	112, 139
SfcI	CTRYAG	1 cut(s)	140
SgeI	CNNG	8 cut(s)	53, 71, 94, 166, 170, 218, 231, 293
Sse9I	AATT	2 cut(s)	22, 27
SseBI	AGGCCT	1 cut(s)	279
SspI	AATATT	1 cut(s)	148
StuI	AGGCCT	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	22, 27
TfiI	GAWTC	2 cut(s)	44, 201
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	72
Tsp45I	GTSAC	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	284
XmnI	GAANNNNTTC	2 cut(s)	36, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.