Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005398

Physical Location & Seq

Genomic Coordinates Forward (+)

8037644 .. 8041195

Gene Structure 3552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14250.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGTTGCACTTCCAGCAAAGGCGTCGACTCGAAGGCGTCCAGGACGGCGCGGTGGCGATCCACCGGCATTGTTGCTCTCCGCGACTCTAAATTGAAGACATTTCCGGATGAAGTTTTTGATCTGGAGAGATCAGTACGCACTATTGATCTGACACGCAATAAAATAGCTGATATTCCTATGGACATTGGCAAGTTAATAAATCTGCAGAGACTGGTCTTAGCTGAGAACCTTATTGATCGACTACCTATGCATGTGTCAAAATTAGAGTCCCTGAAAGTTATGACGCTTGATTCAAATCGAATTACTTCCTTGCCTGATGAATTGGGACAATTGGTCAGGCTTGAGCGATTATCAATTTCTAAAAATTCTTTGTCATGTTTGCCTGAGACTATCGGAAGCTTGCGCAATCTAGTGCTGTTAAATGTATCAAACAACAAGTTAAAGTCTCTTCCCGAATCAGTTGGGAGTTGCTTCTCTCTAGAAGAATTACAAGCAGATGATAATTCAATTGAAGATCTTCCTGAATCCGTCTGCAATCTTGGTCACTTAAAGTCGCTTTGCTTGGACAATAATAATGTGAAGCAGATACCGACCAATCTAATGAAAGACTGTAAAGCTCTGCAGAATATTTCCCTGCACGGAAATCCTATATCAATGGATCAGTTTCAGCAAATGGAAGGATTCCAAGAATTTGAAGCAAGGAGGAAGAAGAAGTTTGACAAACAGATTGACTCAAATGTAATGATCAGTTCTAAAGGCCTTGATGAAGGTGTTGATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8

Protein Analysis

262

Amino Acids

29.21

Weight (kDa)

6.45

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	44 - 102	2.2e-08	Leucine rich repeat
LRR_14	PF23598	47 - 119	3e-10	Leucine-rich repeat region
LRR_14	PF23598	85 - 165	2.7e-13	Leucine-rich repeat region
LRR_8	PF13855	91 - 148	1.8e-09	Leucine rich repeat
LRR_14	PF23598	141 - 245	4.7e-09	Leucine-rich repeat region
LRR_8	PF13855	160 - 218	7.2e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07910
fragaria_vesca	FvH4_5g14250 FvH4_5g14250 FvH4_5g14250
malus_domestica	MD06G1200000.v1.1 MD14G1209200.v1.1
prunus_persica	Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1
pyrus_communis	pycom06g17670 pycom14g17300
rosa_chinensis	RchiOBHm_Chr7g0182671
rosa_laevigata	RLG00000005110
rosa_multiflora	Rmu_co8261001.1_g000001 Rmu_sc0038024.1_g000001 Rmu_sc0038137.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271080
rosa_rugosa	Rorug06G0448900 Rorug06G0449000 Rorug06G0449000 Rorug06G0449000
rosa_samantha	Rh7AG052800 Rh7BG052400 Rh7CG053900 Rh7DG052200
rosa_wichuraiana	Rw7G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	407
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	2 cut(s)	52, 84
AccIII	TCCGGA	1 cut(s)	106
AciI	CCGC	2 cut(s)	52, 82
AclWI	GGATC	2 cut(s)	54, 669
AcsI	RAATTY	2 cut(s)	367, 692
AcyI	GRCGYC	2 cut(s)	24, 38
AfaI	GTAC	1 cut(s)	138
AgsI	TTSAA	5 cut(s)	97, 297, 510, 515, 698
AhdI	GACNNNNNGTC	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	4 cut(s)	170, 224, 402, 620
AluI	AGCT	4 cut(s)	170, 224, 402, 620
Alw26I	GTCTC	3 cut(s)	205, 383, 453
AlwI	GGATC	2 cut(s)	54, 669
AlwNI	CAGNNNCTG	1 cut(s)	214
Aor13HI	TCCGGA	1 cut(s)	106
AoxI	GGCC	1 cut(s)	760
ApoI	RAATTY	2 cut(s)	367, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
Asp700I	GAANNNNTTC	2 cut(s)	307, 519
AspLEI	GCGC	2 cut(s)	52, 408
BbsI	GAAGAC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	1 cut(s)	43
BclI	TGATCA	2 cut(s)	747, 778
BcoDI	GTCTC	3 cut(s)	205, 383, 453
BfaI	CTAG	2 cut(s)	413, 482
BfmI	CTRYAG	2 cut(s)	206, 623
BglII	AGATCT	1 cut(s)	517
Bme1390I	CCNGG	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	335
BmrFI	CCNGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	297
BsaHI	GRCGYC	2 cut(s)	24, 38
BsaWI	WCCGGW	1 cut(s)	106
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	219
Bse8I	GATNNNNATC	1 cut(s)	297
BseAI	TCCGGA	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	115
BseJI	GATNNNNATC	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	216, 378
BseNI	ACTGG	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	623
Bsh1236I	CGCG	2 cut(s)	52, 84
BshFI	GGCC	1 cut(s)	762
BsiSI	CCGG	2 cut(s)	66, 107
BslFI	GGGAC	2 cut(s)	256, 342
BsmAI	GTCTC	3 cut(s)	205, 383, 453
BsmFI	GGGAC	2 cut(s)	256, 342
BsnI	GGCC	1 cut(s)	762
Bsp13I	TCCGGA	1 cut(s)	106
Bsp143I	GATC	9 cut(s)	59, 121, 131, 148, 238, 517, 661, 747, 778
BspACI	CCGC	2 cut(s)	52, 82
BspANI	GGCC	1 cut(s)	762
BspCNI	CTCAG	2 cut(s)	217, 379
BspEI	TCCGGA	1 cut(s)	106
BspFNI	CGCG	2 cut(s)	52, 84
BspMAI	CTGCAG	2 cut(s)	210, 627
BspPI	GGATC	2 cut(s)	54, 669
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	219
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	9 cut(s)	59, 121, 131, 148, 238, 517, 661, 747, 778
BssNI	GRCGYC	2 cut(s)	24, 38
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	614
Bst6I	CTCTTC	1 cut(s)	456
BstACI	GRCGYC	2 cut(s)	24, 38
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	3 cut(s)	220, 225, 387
BstF5I	GGATG	1 cut(s)	115
BstFNI	CGCG	2 cut(s)	52, 84
BstHHI	GCGC	2 cut(s)	52, 408
BstKTI	GATC	9 cut(s)	62, 124, 134, 151, 241, 520, 664, 750, 781
BstMAI	GTCTC	3 cut(s)	205, 383, 453
BstMBI	GATC	9 cut(s)	59, 121, 131, 148, 238, 517, 661, 747, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	41
BstSFI	CTRYAG	2 cut(s)	206, 623
BstUI	CGCG	2 cut(s)	52, 84
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	762
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	404
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	2 cut(s)	52, 408
Cfr10I	RCCGGY	1 cut(s)	65
CseI	GACGC	3 cut(s)	13, 27, 295
Csp6I	GTAC	1 cut(s)	137
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	2 cut(s)	254, 378
CviJI	RGCY	6 cut(s)	170, 224, 343, 402, 620, 762
CviKI_1	RGCY	6 cut(s)	170, 224, 343, 402, 620, 762
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	3 cut(s)	220, 225, 387
DpnI	GATC	9 cut(s)	61, 123, 133, 150, 240, 519, 663, 749, 780
DpnII	GATC	9 cut(s)	59, 121, 131, 148, 238, 517, 661, 747, 778
DriI	GACNNNNNGTC	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	456
Eam1105I	GACNNNNNGTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	456
Eco147I	AGGCCT	1 cut(s)	762
EcoRII	CCWGG	1 cut(s)	41
EcoT22I	ATGCAT	1 cut(s)	255
FaeI	CATG	2 cut(s)	257, 381
FaiI	YATR	6 cut(s)	182, 251, 255, 284, 379, 653
FaqI	GGGAC	2 cut(s)	256, 342
FatI	CATG	2 cut(s)	253, 377
FbaI	TGATCA	2 cut(s)	747, 778
FblI	GTMKAC	1 cut(s)	27
FokI	GGATG	1 cut(s)	122
FspBI	CTAG	2 cut(s)	413, 482
FspI	TGCGCA	1 cut(s)	407
GlaI	GCGC	2 cut(s)	51, 407
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	762
HapII	CCGG	2 cut(s)	66, 107
HgaI	GACGC	3 cut(s)	13, 27, 295
HhaI	GCGC	2 cut(s)	52, 408
Hin1I	GRCGYC	2 cut(s)	24, 38
Hin1II	CATG	2 cut(s)	257, 381
Hin6I	GCGC	2 cut(s)	50, 406
HinP1I	GCGC	2 cut(s)	50, 406
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	8 cut(s)	29, 86, 269, 293, 458, 527, 684, 734
HpaII	CCGG	2 cut(s)	66, 107
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	153, 398
Hpy188III	TCNNGA	5 cut(s)	107, 125, 455, 482, 524
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	3 cut(s)	28, 674, 764
HpyCH4III	ACNGT	1 cut(s)	614
HpyCH4V	TGCA	6 cut(s)	9, 208, 253, 537, 625, 640
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	3 cut(s)	220, 225, 387
Hsp92I	GRCGYC	2 cut(s)	24, 38
Hsp92II	CATG	2 cut(s)	257, 381
HspAI	GCGC	2 cut(s)	50, 406
Kpn2I	TCCGGA	1 cut(s)	106
Ksp22I	TGATCA	2 cut(s)	747, 778
Kzo9I	GATC	9 cut(s)	59, 121, 131, 148, 238, 517, 661, 747, 778
MaeI	CTAG	2 cut(s)	413, 482
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	9 cut(s)	61, 123, 133, 150, 240, 519, 663, 749, 780
MboI	GATC	9 cut(s)	59, 121, 131, 148, 238, 517, 661, 747, 778
MboII	GAAGA	7 cut(s)	109, 443, 497, 512, 527, 721, 724
MfeI	CAATTG	2 cut(s)	332, 510
MflI	RGATCY	1 cut(s)	517
MlyI	GAGTC	4 cut(s)	23, 80, 278, 728
MnlI	CCTC	1 cut(s)	699
Mph1103I	ATGCAT	1 cut(s)	255
MroI	TCCGGA	1 cut(s)	106
MroXI	GAANNNNTTC	2 cut(s)	307, 519
MseI	TTAA	4 cut(s)	197, 422, 443, 551
MspI	CCGG	2 cut(s)	66, 107
MspR9I	CCNGG	1 cut(s)	43
MunI	CAATTG	2 cut(s)	332, 510
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	2 cut(s)	52, 84
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeII	GATC	9 cut(s)	59, 121, 131, 148, 238, 517, 661, 747, 778
NlaIII	CATG	2 cut(s)	257, 381
NmuCI	GTSAC	1 cut(s)	545
NsbI	TGCGCA	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	255
NspI	RCATGY	1 cut(s)	257
PceI	AGGCCT	1 cut(s)	762
PdmI	GAANNNNTTC	2 cut(s)	307, 519
PfeI	GAWTC	4 cut(s)	293, 458, 527, 684
PfoI	TCCNGGA	1 cut(s)	41
PleI	GAGTC	4 cut(s)	23, 80, 277, 728
PpsI	GAGTC	4 cut(s)	23, 80, 277, 728
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PstI	CTGCAG	2 cut(s)	210, 627
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SalI	GTCGAC	1 cut(s)	26
SaqAI	TTAA	4 cut(s)	197, 422, 443, 551
Sau3AI	GATC	9 cut(s)	59, 121, 131, 148, 238, 517, 661, 747, 778
SchI	GAGTC	4 cut(s)	23, 80, 278, 728
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	7 cut(s)	172, 226, 234, 250, 404, 622, 775
SfcI	CTRYAG	2 cut(s)	206, 623
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SseBI	AGGCCT	1 cut(s)	762
SsiI	CCGC	2 cut(s)	52, 82
SspI	AATATT	1 cut(s)	631
SspMI	CTAG	2 cut(s)	413, 482
StuI	AGGCCT	1 cut(s)	762
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	614
TaqI	TCGA	4 cut(s)	27, 32, 241, 301
TfiI	GAWTC	4 cut(s)	293, 458, 527, 684
Tru1I	TTAA	4 cut(s)	197, 422, 443, 551
Tru9I	TTAA	4 cut(s)	197, 422, 443, 551
TseFI	GTSAC	1 cut(s)	545
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	4 cut(s)	126, 336, 620, 783
TspGWI	ACGGA	2 cut(s)	520, 657
XapI	RAATTY	2 cut(s)	367, 692
XbaI	TCTAGA	1 cut(s)	481
XceI	RCATGY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	2 cut(s)	307, 519
XspI	CTAG	2 cut(s)	413, 482
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.