Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005398

Physical Location & Seq

Genomic Coordinates Reverse (-)

21581904 .. 21584903

Gene Structure 3000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17670.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGTTGCGCTACCAGCAAAAACGCGGATTCGAAAGCGAGCCGGGCCGCTCGGTGGCGATCCACCGGCATTGTTGGCCTCCGCGACTCCAAATTGAAGACATTTCCAGCTGAAGTTCTCGACCTGGACAGGTCCATACGTACTATTGATCTAACAAACAATAAAATAGTTGAAATTCCTATGGATATCAGCAAATTTGTAAACCTGCAGAAACTGATATTAGCTCATAACCTCATTGACCGACTACCGATAAATTTGGCAAGACTAGAGTCGCTAAAAGTTATGACATTTGATGGAAATCGATTAGTCAGACTTGAGCAGTTATCCATCTCCGGAAATTCATTAGAGTCTTTGCCTGCGACTATTGGAAGCTTGCGGAATTTAAAGCTTTTAAATGTATCGAAGAACAAGTTAAAGTCTCTTCCGGAATCCATCGGAAGTTGCTTCTCTCTGGAAGAATTACAAGCTGATGATAATTCAATAGACGAACTTCCTGAGTCAGTCTGCAACCTTATCCACGTAAAGTCGTTTTGCTTGGACAATAATAATGTGAAAAAGATACCCACTAATCTGTTGAAAGACTGTAAAGCGCTGCAGAATATTTCCCTCCATGGAAACCCTATTTCCATGGATCAGTTTCAGCAGATGGAAGGATTTCAAGAGTTTGAAGCAAGAAGGAAGAAGAAGTTTGACAAACAAATTCACTCAAATGTGATGATCAGTTCCAAAGGCCTTGATGAGGGTATCGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8

Protein Analysis

252

Amino Acids

28.07

Weight (kDa)

8.76

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07910
fragaria_vesca	FvH4_5g14250 FvH4_5g14250 FvH4_5g14250
malus_domestica	MD06G1200000.v1.1 MD14G1209200.v1.1
prunus_persica	Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1 Prupe.5G201600_v2.0.a1
pyrus_communis	pycom06g17670 pycom14g17300
rosa_chinensis	RchiOBHm_Chr7g0182671
rosa_laevigata	RLG00000005110
rosa_multiflora	Rmu_co8261001.1_g000001 Rmu_sc0038024.1_g000001 Rmu_sc0038137.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271080
rosa_rugosa	Rorug06G0448900 Rorug06G0449000 Rorug06G0449000 Rorug06G0449000
rosa_samantha	Rh7AG052800 Rh7BG052400 Rh7CG053900 Rh7DG052200
rosa_wichuraiana	Rw7G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	213
AccBSI	CCGCTC	1 cut(s)	50
AccII	CGCG	2 cut(s)	26, 84
AccIII	TCCGGA	2 cut(s)	332, 424
AciI	CCGC	4 cut(s)	26, 48, 82, 376
AclWI	GGATC	2 cut(s)	54, 639
AcsI	RAATTY	6 cut(s)	174, 194, 253, 337, 379, 699
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	1 cut(s)	142
AfeI	AGCGCT	1 cut(s)	591
AfiI	CCNNNNNNNGG	2 cut(s)	54, 739
AgsI	TTSAA	6 cut(s)	97, 173, 480, 577, 659, 668
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	5 cut(s)	110, 224, 372, 388, 467
AluI	AGCT	5 cut(s)	110, 224, 372, 388, 467
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	54, 639
AlwNI	CAGNNNCTG	1 cut(s)	214
Aor13HI	TCCGGA	2 cut(s)	332, 424
Aor51HI	AGCGCT	1 cut(s)	591
AoxI	GGCC	3 cut(s)	45, 76, 730
ApeKI	GCWGC	1 cut(s)	592
ApoI	RAATTY	6 cut(s)	174, 194, 253, 337, 379, 699
Asp700I	GAANNNNTTC	1 cut(s)	654
AspLEI	GCGC	2 cut(s)	11, 592
AspS9I	GGNCC	2 cut(s)	45, 132
AsuC2I	CCSGG	1 cut(s)	44
AsuII	TTCGAA	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	579
BccI	CCATC	4 cut(s)	287, 335, 440, 640
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	1 cut(s)	717
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	2 cut(s)	206, 593
BfoI	RGCGCY	1 cut(s)	593
BfuAI	ACCTGC	1 cut(s)	213
BisI	GCNGC	2 cut(s)	48, 593
BlsI	GCNGC	2 cut(s)	49, 594
Bme1390I	CCNGG	2 cut(s)	44, 125
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	45, 132
BmrFI	CCNGG	2 cut(s)	44, 125
BoxI	GACNNNNGTC	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	44
Bsa29I	ATCGAT	2 cut(s)	301, 747
BsaAI	YACGTR	2 cut(s)	140, 520
BsaBI	GATNNNNATC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	610, 627
BsaWI	WCCGGW	2 cut(s)	332, 424
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 739
Bse118I	RCCGGY	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	297
BseAI	TCCGGA	2 cut(s)	332, 424
BseBI	CCWGG	1 cut(s)	125
BseCI	ATCGAT	2 cut(s)	301, 747
BseDI	CCNNGG	2 cut(s)	610, 627
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	54, 739
BseMII	CTCAG	1 cut(s)	486
BseXI	GCAGC	1 cut(s)	579
Bsh1236I	CGCG	2 cut(s)	26, 84
BshFI	GGCC	3 cut(s)	47, 78, 732
BshVI	ATCGAT	2 cut(s)	301, 747
BsiSI	CCGG	4 cut(s)	43, 66, 333, 425
BslI	CCNNNNNNNGG	2 cut(s)	54, 739
BsmAI	GTCTC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	47, 78, 732
Bsp119I	TTCGAA	1 cut(s)	32
Bsp13I	TCCGGA	2 cut(s)	332, 424
Bsp143I	GATC	5 cut(s)	59, 148, 631, 717, 748
Bsp19I	CCATGG	2 cut(s)	610, 627
BspACI	CCGC	4 cut(s)	26, 48, 82, 376
BspANI	GGCC	3 cut(s)	47, 78, 732
BspCNI	CTCAG	1 cut(s)	487
BspDI	ATCGAT	2 cut(s)	301, 747
BspEI	TCCGGA	2 cut(s)	332, 424
BspFNI	CGCG	2 cut(s)	26, 84
BspMAI	CTGCAG	2 cut(s)	210, 597
BspMI	ACCTGC	1 cut(s)	213
BspPI	GGATC	2 cut(s)	54, 639
BspT104I	TTCGAA	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	610, 627
BssMI	GATC	5 cut(s)	59, 148, 631, 717, 748
BssT1I	CCWWGG	2 cut(s)	610, 627
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	584
Bst6I	CTCTTC	1 cut(s)	426
BstBAI	YACGTR	2 cut(s)	140, 520
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	3 cut(s)	40, 357, 374
BstDEI	CTNAG	1 cut(s)	495
BstDSI	CCRYGG	2 cut(s)	610, 627
BstENI	CCTNNNNNAGG	1 cut(s)	737
BstFNI	CGCG	2 cut(s)	26, 84
BstH2I	RGCGCY	1 cut(s)	593
BstHHI	GCGC	2 cut(s)	11, 592
BstKTI	GATC	5 cut(s)	62, 151, 634, 720, 751
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	5 cut(s)	59, 148, 631, 717, 748
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 44, 75
BstNI	CCWGG	1 cut(s)	125
BstPAI	GACNNNNGTC	1 cut(s)	268
BstSCI	CCNGG	2 cut(s)	42, 123
BstSFI	CTRYAG	2 cut(s)	206, 593
BstSNI	TACGTA	1 cut(s)	140
BstUI	CGCG	2 cut(s)	26, 84
BstV1I	GCAGC	1 cut(s)	579
BstV2I	GAAGAC	1 cut(s)	104
Bsu15I	ATCGAT	2 cut(s)	301, 747
BsuRI	GGCC	3 cut(s)	47, 78, 732
BsuTUI	ATCGAT	2 cut(s)	301, 747
BtgI	CCRYGG	2 cut(s)	610, 627
BveI	ACCTGC	1 cut(s)	213
Cac8I	GCNNGC	3 cut(s)	40, 357, 374
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	2 cut(s)	11, 592
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	45, 132
ClaI	ATCGAT	2 cut(s)	301, 747
Csp6I	GTAC	1 cut(s)	141
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	2 cut(s)	611, 628
CviJI	RGCY	9 cut(s)	42, 47, 78, 110, 224, 372, 388, 467, 732
CviKI_1	RGCY	9 cut(s)	42, 47, 78, 110, 224, 372, 388, 467, 732
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	5 cut(s)	61, 150, 633, 719, 750
DpnII	GATC	5 cut(s)	59, 148, 631, 717, 748
DraI	TTTAAA	2 cut(s)	384, 393
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco105I	TACGTA	1 cut(s)	140
Eco130I	CCWWGG	2 cut(s)	610, 627
Eco147I	AGGCCT	1 cut(s)	732
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	132
Eco47III	AGCGCT	1 cut(s)	591
Eco57I	CTGAAG	1 cut(s)	132
EcoNI	CCTNNNNNAGG	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	610, 627
ErhI	CCWWGG	2 cut(s)	610, 627
FaeI	CATG	2 cut(s)	614, 631
FaiI	YATR	6 cut(s)	137, 182, 228, 284, 612, 629
FatI	CATG	2 cut(s)	610, 627
FbaI	TGATCA	1 cut(s)	717
Fnu4HI	GCNGC	2 cut(s)	48, 593
Fsp4HI	GCNGC	2 cut(s)	48, 593
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	2 cut(s)	10, 591
GluI	GCNGC	2 cut(s)	48, 593
HaeII	RGCGCY	1 cut(s)	593
HaeIII	GGCC	3 cut(s)	47, 78, 732
HapII	CCGG	4 cut(s)	43, 66, 333, 425
HhaI	GCGC	2 cut(s)	11, 592
Hin1II	CATG	2 cut(s)	614, 631
Hin6I	GCGC	2 cut(s)	9, 590
HinP1I	GCGC	2 cut(s)	9, 590
HindIII	AAGCTT	2 cut(s)	370, 386
HinfI	GANTC	6 cut(s)	29, 86, 269, 347, 428, 497
HpaII	CCGG	4 cut(s)	43, 66, 333, 425
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	311, 437
Hpy188III	TCNNGA	6 cut(s)	119, 333, 425, 452, 494, 659
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	644, 669
HpyCH4III	ACNGT	1 cut(s)	584
HpyCH4IV	ACGT	2 cut(s)	139, 519
HpyCH4V	TGCA	3 cut(s)	208, 507, 595
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 44, 75
HpyF3I	CTNAG	1 cut(s)	495
HpySE526I	ACGT	2 cut(s)	139, 519
Hsp92II	CATG	2 cut(s)	614, 631
HspAI	GCGC	2 cut(s)	9, 590
Kpn2I	TCCGGA	2 cut(s)	332, 424
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	5 cut(s)	59, 148, 631, 717, 748
Lsp1109I	GCAGC	1 cut(s)	579
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	2 cut(s)	139, 519
MalI	GATC	5 cut(s)	61, 150, 633, 719, 750
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	5 cut(s)	59, 148, 631, 717, 748
MboII	GAAGA	6 cut(s)	109, 413, 415, 467, 691, 694
MluCI	AATT	9 cut(s)	92, 174, 194, 253, 337, 379, 458, 475, 699
MlyI	GAGTC	4 cut(s)	80, 278, 356, 506
MnlI	CCTC	4 cut(s)	89, 242, 617, 733
MroI	TCCGGA	2 cut(s)	332, 424
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	3 cut(s)	383, 392, 413
MslI	CAYNNNNRTG	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	4 cut(s)	43, 66, 333, 425
MspR9I	CCNGG	2 cut(s)	44, 125
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	2 cut(s)	26, 84
MwoI	GCNNNNNNNGC	3 cut(s)	15, 44, 75
NciI	CCSGG	1 cut(s)	44
NcoI	CCATGG	2 cut(s)	610, 627
NdeII	GATC	5 cut(s)	59, 148, 631, 717, 748
NlaIII	CATG	2 cut(s)	614, 631
NspV	TTCGAA	1 cut(s)	32
PceI	AGGCCT	1 cut(s)	732
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	2 cut(s)	29, 428
PkrI	GCNGC	2 cut(s)	49, 594
PleI	GAGTC	4 cut(s)	80, 277, 355, 505
PpsI	GAGTC	4 cut(s)	80, 277, 355, 505
Ppu21I	YACGTR	2 cut(s)	140, 520
PshAI	GACNNNNGTC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspPI	GGNCC	2 cut(s)	45, 132
PstI	CTGCAG	2 cut(s)	210, 597
PstNI	CAGNNNCTG	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	708
SaqAI	TTAA	3 cut(s)	383, 392, 413
SatI	GCNGC	2 cut(s)	48, 593
Sau3AI	GATC	5 cut(s)	59, 148, 631, 717, 748
Sau96I	GGNCC	2 cut(s)	45, 132
SchI	GAGTC	4 cut(s)	80, 278, 356, 506
ScrFI	CCNGG	2 cut(s)	44, 125
SfcI	CTRYAG	2 cut(s)	206, 593
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	708
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SnaBI	TACGTA	1 cut(s)	140
Sse9I	AATT	9 cut(s)	92, 174, 194, 253, 337, 379, 458, 475, 699
SseBI	AGGCCT	1 cut(s)	732
SsiI	CCGC	4 cut(s)	26, 48, 82, 376
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	1 cut(s)	266
StuI	AGGCCT	1 cut(s)	732
StyD4I	CCNGG	2 cut(s)	42, 123
StyI	CCWWGG	2 cut(s)	610, 627
TaaI	ACNGT	1 cut(s)	584
TaiI	ACGT	2 cut(s)	142, 522
TaqI	TCGA	5 cut(s)	32, 120, 301, 401, 747
TaqII	GACCGA	1 cut(s)	255
TasI	AATT	9 cut(s)	92, 174, 194, 253, 337, 379, 458, 475, 699
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	29, 428
Tru1I	TTAA	3 cut(s)	383, 392, 413
Tru9I	TTAA	3 cut(s)	383, 392, 413
TseI	GCWGC	1 cut(s)	592
TspDTI	ATGAA	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	132
XagI	CCTNNNNNAGG	1 cut(s)	737
XapI	RAATTY	6 cut(s)	174, 194, 253, 337, 379, 699
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.