Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007661

Physical Location & Seq

Genomic Coordinates Forward (+)

2584358 .. 2586035

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGAATAAAAAAAGAAGATCAGAAAAGTTCCTTGTCCTTGTTGACGCAACGATGGAATAATCCGAGGATCGTGCGAGTCTCCCGAGCATTTGGAGGCAAAGATAGACACAGCAAAGTGTGCACAGTTCGTGGTCTCCGAGACAGGAGGATAAGGTTGTCGGTGATGACAGCGATCCAAGTCTACGACCTTCAAGAACGATTAGGGCTGAGTCAGCCTAGCAAAGTCATTGATTGGCTCTTAGAAGTTGCCAAAAACGACGTCGATTTGCTTCCTCCTTTGCAATTCCCACCTGGTTTTCACCAACTTAACCCTAATCTCACCGGCCTTGGAGAATCTTTTCCCGGGGTCTTCGATCTTGGAAGAACACAGAGAGAAGCTTTGGATCTTGAGAAAAGGAAATGGGTTAATCTTGATCATGTGTTTGATCACATCGATCATCACAACCATTTCTCGAATTCAATCCAGAGCAACAAGCTTTATTTCCCTACAATTACTTCGTCTAGCAGCTCTTATCACTACAACCTTGGACATCTCCAACAGTCACTACTAGACCAATCTGGTAACGTCACTGTCGCATTTTCTAATAACTATAATAATAATAATCTCAATCCTCCGGCGGCGGAAACTATGAGTTCTCTATTCCCAACAAGGTACCCTTCGTTTCTCGGTGGTGGTCAACTTCAACTCTTTAGTAGCACAAGCTCACAACCAGACCATATCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

242

Amino Acids

27.41

Weight (kDa)

9.01

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	33 - 93	4.9e-25	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08070 AT5G08070 AT5G60970
fragaria_vesca	FvH4_5g13710 FvH4_5g13710
malus_domestica	MD06G1226300.v1.1 MD14G1213400.v1.1
prunus_persica	Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1
pyrus_communis	pycom06g18050 pycom14g17680
rosa_chinensis	RchiOBHm_Chr7g0183231
rosa_laevigata	RLG00000005063
rosa_multiflora	Rmu_sc0008744.1_g000013
rosa_roxburghii	Rroxscaffold_3G00270630
rosa_rugosa	Rorug06G0455400 Rorug06G0455400 Rorug06G0455400
rosa_samantha	Rh7AG057400 Rh7BG057300 Rh7CG058900 Rh7DG057100
rosa_wichuraiana	Rw7G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
Acc65I	GGTACC	1 cut(s)	654
AccB1I	GGYRCC	1 cut(s)	654
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	2 cut(s)	620, 623
AclWI	GGATC	3 cut(s)	77, 169, 393
AcsI	RAATTY	1 cut(s)	457
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	1 cut(s)	656
AgsI	TTSAA	3 cut(s)	194, 462, 686
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	4 cut(s)	380, 478, 510, 705
AluI	AGCT	4 cut(s)	380, 478, 510, 705
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	3 cut(s)	85, 135, 140
Alw44I	GTGCAC	1 cut(s)	121
AlwI	GGATC	3 cut(s)	77, 169, 393
Ama87I	CYCGRG	2 cut(s)	84, 344
AoxI	GGCC	1 cut(s)	325
ApaLI	GTGCAC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	1 cut(s)	457
ArsI	GACNNNNNNTTYG	2 cut(s)	246, 278
Asp700I	GAANNNNTTC	1 cut(s)	339
Asp718I	GGTACC	1 cut(s)	654
AsuC2I	CCSGG	2 cut(s)	345, 346
AsuHPI	GGTGA	3 cut(s)	175, 293, 313
AvaI	CYCGRG	2 cut(s)	84, 344
BaeGI	GKGCMC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	654
BbsI	GAAGAC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	519
BccI	CCATC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	2 cut(s)	415, 427
BcnI	CCSGG	2 cut(s)	345, 346
BcoDI	GTCTC	3 cut(s)	85, 135, 140
BfaI	CTAG	3 cut(s)	219, 504, 551
BisI	GCNGC	2 cut(s)	508, 621
BlsI	GCNGC	2 cut(s)	509, 622
Bme1390I	CCNGG	3 cut(s)	294, 345, 346
BmeT110I	CYCGRG	2 cut(s)	84, 344
BmiI	GGNNCC	1 cut(s)	656
BmrFI	CCNGG	3 cut(s)	294, 345, 346
BpiI	GAAGAC	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	2 cut(s)	345, 346
Bsa29I	ATCGAT	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	5 cut(s)	65, 328, 344, 345, 526
Bse118I	RCCGGY	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	294
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	5 cut(s)	65, 328, 344, 345, 526
BseMII	CTCAG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	519
BshFI	GGCC	1 cut(s)	327
BshNI	GGYRCC	1 cut(s)	654
BshVI	ATCGAT	1 cut(s)	435
BsiHKAI	GWGCWC	1 cut(s)	125
BsiHKCI	CYCGRG	2 cut(s)	84, 344
BsiSI	CCGG	3 cut(s)	324, 345, 617
BsmAI	GTCTC	3 cut(s)	85, 135, 140
BsnI	GGCC	1 cut(s)	327
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	2 cut(s)	84, 344
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	8 cut(s)	19, 69, 174, 355, 385, 415, 427, 436
BspACI	CCGC	2 cut(s)	620, 623
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	201
BspDI	ATCGAT	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	656
BspPI	GGATC	3 cut(s)	77, 169, 393
BspT107I	GGYRCC	1 cut(s)	654
BspTNI	GGTCTC	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	5 cut(s)	65, 328, 344, 345, 526
BssMI	GATC	8 cut(s)	19, 69, 174, 355, 385, 415, 427, 436
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	2 cut(s)	328, 526
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	127, 543, 574
BstACI	GRCGYC	1 cut(s)	261
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	209, 241
BstKTI	GATC	8 cut(s)	22, 72, 177, 358, 388, 418, 430, 439
BstMAI	GTCTC	3 cut(s)	85, 135, 140
BstMBI	GATC	8 cut(s)	19, 69, 174, 355, 385, 415, 427, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 214
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	3 cut(s)	292, 343, 344
BstSLI	GKGCMC	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
Bsu15I	ATCGAT	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	327
BsuTUI	ATCGAT	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	570
Cfr10I	RCCGGY	1 cut(s)	323
Cfr9I	CCCGGG	1 cut(s)	344
ClaI	ATCGAT	1 cut(s)	435
CseI	GACGC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	655
CviAII	CATG	1 cut(s)	419
CviJI	RGCY	8 cut(s)	208, 217, 238, 327, 380, 478, 510, 705
CviKI_1	RGCY	8 cut(s)	208, 217, 238, 327, 380, 478, 510, 705
CviQI	GTAC	1 cut(s)	655
DdeI	CTNAG	2 cut(s)	209, 241
DpnI	GATC	8 cut(s)	21, 71, 176, 357, 387, 417, 429, 438
DpnII	GATC	8 cut(s)	19, 69, 174, 355, 385, 415, 427, 436
EciI	GGCGGA	1 cut(s)	638
Eco130I	CCWWGG	2 cut(s)	328, 526
Eco31I	GGTCTC	1 cut(s)	140
Eco88I	CYCGRG	2 cut(s)	84, 344
EcoRI	GAATTC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	328, 526
ErhI	CCWWGG	2 cut(s)	328, 526
FaeI	CATG	1 cut(s)	422
FaiI	YATR	4 cut(s)	420, 594, 632, 720
FalI	AAGNNNNNCTT	2 cut(s)	643, 675
FatI	CATG	1 cut(s)	418
FbaI	TGATCA	2 cut(s)	415, 427
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	508, 621
Fsp4HI	GCNGC	2 cut(s)	508, 621
FspBI	CTAG	3 cut(s)	219, 504, 551
GluI	GCNGC	2 cut(s)	508, 621
HaeIII	GGCC	1 cut(s)	327
HapII	CCGG	3 cut(s)	324, 345, 617
HgaI	GACGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	1 cut(s)	422
HincII	GTYRAC	2 cut(s)	45, 680
HindII	GTYRAC	2 cut(s)	45, 680
HindIII	AAGCTT	2 cut(s)	378, 476
HinfI	GANTC	3 cut(s)	78, 211, 335
HpaII	CCGG	3 cut(s)	324, 345, 617
HphI	GGTGA	3 cut(s)	175, 293, 313
Hpy166II	GTNNAC	4 cut(s)	45, 123, 184, 680
Hpy188I	TCNGA	3 cut(s)	24, 66, 140
Hpy188III	TCNNGA	6 cut(s)	84, 194, 389, 413, 454, 466
Hpy8I	GTNNAC	4 cut(s)	45, 123, 184, 680
Hpy99I	CGWCG	2 cut(s)	263, 266
HpyAV	CCTTC	2 cut(s)	200, 669
HpyCH4III	ACNGT	3 cut(s)	127, 543, 574
HpyCH4IV	ACGT	2 cut(s)	261, 567
HpyCH4V	TGCA	2 cut(s)	123, 283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 214
HpyF3I	CTNAG	2 cut(s)	209, 241
HpySE526I	ACGT	2 cut(s)	261, 567
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	422
KpnI	GGTACC	1 cut(s)	658
Ksp22I	TGATCA	2 cut(s)	415, 427
Kzo9I	GATC	8 cut(s)	19, 69, 174, 355, 385, 415, 427, 436
LpnPI	CCDG	8 cut(s)	130, 279, 306, 337, 358, 479, 546, 630
Lsp1109I	GCAGC	1 cut(s)	519
MabI	ACCWGGT	1 cut(s)	292
MaeI	CTAG	3 cut(s)	219, 504, 551
MaeII	ACGT	2 cut(s)	261, 567
MaeIII	GTNAC	3 cut(s)	543, 563, 568
MalI	GATC	8 cut(s)	21, 71, 176, 357, 387, 417, 429, 438
MboI	GATC	8 cut(s)	19, 69, 174, 355, 385, 415, 427, 436
MboII	GAAGA	3 cut(s)	29, 343, 375
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	3 cut(s)	284, 457, 492
MlyI	GAGTC	2 cut(s)	87, 220
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	5 cut(s)	60, 89, 141, 285, 624
MroXI	GAANNNNTTC	1 cut(s)	339
MseI	TTAA	2 cut(s)	309, 408
MspI	CCGG	3 cut(s)	324, 345, 617
MspR9I	CCNGG	3 cut(s)	294, 345, 346
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	120, 214
NciI	CCSGG	2 cut(s)	345, 346
NdeII	GATC	8 cut(s)	19, 69, 174, 355, 385, 415, 427, 436
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	1 cut(s)	656
NmuCI	GTSAC	2 cut(s)	543, 568
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	2 cut(s)	509, 622
PleI	GAGTC	2 cut(s)	86, 219
PpsI	GAGTC	2 cut(s)	86, 219
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	656
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
SaqAI	TTAA	2 cut(s)	309, 408
SatI	GCNGC	2 cut(s)	508, 621
Sau3AI	GATC	8 cut(s)	19, 69, 174, 355, 385, 415, 427, 436
SchI	GAGTC	2 cut(s)	87, 220
ScrFI	CCNGG	3 cut(s)	294, 345, 346
SduI	GDGCHC	1 cut(s)	125
SexAI	ACCWGGT	1 cut(s)	292
SmaI	CCCGGG	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	3 cut(s)	284, 457, 492
SsiI	CCGC	2 cut(s)	620, 623
SspMI	CTAG	3 cut(s)	219, 504, 551
StyD4I	CCNGG	3 cut(s)	292, 343, 344
StyI	CCWWGG	2 cut(s)	328, 526
TaaI	ACNGT	3 cut(s)	127, 543, 574
TaiI	ACGT	2 cut(s)	264, 570
TaqI	TCGA	5 cut(s)	264, 354, 435, 455, 723
TasI	AATT	3 cut(s)	284, 457, 492
TauI	GCSGC	1 cut(s)	623
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	309, 408
Tru9I	TTAA	2 cut(s)	309, 408
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	2 cut(s)	543, 568
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	2 cut(s)	543, 568
TspMI	CCCGGG	1 cut(s)	344
TspRI	CASTG	1 cut(s)	577
VneI	GTGCAC	1 cut(s)	121
XapI	RAATTY	1 cut(s)	457
XmaI	CCCGGG	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	3 cut(s)	219, 504, 551
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.