AT5G60970
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007661
Physical Location & Seq
Reverse (-)
24535337 .. 24537244
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60970.1

Sequence Viewer

Length: 1083 bp
ATGAGATCAGGAGAATGTGATGAAGAGGAGATTCAAGCAAAGCAAGAAAGAGATCAAAATCAAAATCATCAAGTAAACTTAAACCACATGTTGCAACAACAACAGCCGAGTTCGGTATCATCTTCAAGGCAATGGACTTCAGCTTTTAGGAATCCAAGAATCGTTCGAGTCTCAAGAACATTCGGTGGCAAAGACAGACACAGCAAAGTATGTACAGTCCGTGGTCTTCGAGACCGGAGGATAAGGTTGTCCGTACCTACAGCTATTCAACTCTACGACCTTCAAGATCGATTAGGGCTGAGTCAGCCAAGCAAAGTCATTGATTGGTTACTCGAAGCAGCAAAAGATGACGTAGACAAGCTACCTCCTCTACAATTCCCACATGGATTTAACCAGATGTATCCAAATCTCATCTTCGGAAACTCCGGGTTTGGAGAATCTCCATCTTCAACTACATCAACAACGTTTCCAGGAACCAATCTCGGGTTCTTGGAAAATTGGGATCTTGGTGGTTCTTCAAGAACAAGAGCAAGATTAACCGATACAACTACGACCCAAAGAGAAAGTTTTGATCTTGATAAAGGAAAATGGATCAAAAACGACGAGAATAGTAATCAAGATCATCAAGGGTTTAACACCAATCATCAACAACAATTTCCTCTGACCAATCCGTACAACAACACTTCAGCTTATTACAACCTTGGACATCTTCAACAATCGTTAGACCAATCTGGTAATAACGTTACTGTCGCAATATCTAATGTTGCTGCTAATAATAACAATAATCTCAATTTGCATCCTCCTTCCTCGTCTGCCGGAGATGGATCTCAGCTTTTTTTCGGTCCTACTCCTCCGGCAATGAGCTCTCTATTCCCGACATACCCTTCGTTTCTTGGAGCTTCTCATCATCATCATGTCGTCGATGGAGCCGGTCATCTTCAGCTCTTTAGCTCGAATTCAAATACCGCATCGCAGCAACACATGATGCCGGGTAATACGAGTTTGATTAGACCATTTCATCATTTGATGAGCTCGAATCATGATACGGATCATCATAGTAGCGATAATGAATCAGATTCTTGA

Protein Analysis

360

Amino Acids

40.16

Weight (kDa)

6.32

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 63 - 174 1.7e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 354
AciI CCGC 1 cut(s) 966
AclI AACGTT 2 cut(s) 464, 741
AclWI GGATC 4 cut(s) 510, 599, 832, 1056
AcsI RAATTY 1 cut(s) 955
AcuI CTGAAG 3 cut(s) 123, 669, 923
AfaI GTAC 3 cut(s) 214, 255, 674
AfiI CCNNNNNNNGG 1 cut(s) 483
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 8 cut(s) 35, 126, 269, 284, 450, 519, 713, 960
AjnI CCWGG 1 cut(s) 469
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
Alw21I GWGCWC 2 cut(s) 866, 1034
Alw26I GTCTC 2 cut(s) 175, 225
AlwI GGATC 4 cut(s) 510, 599, 832, 1056
Ama87I CYCGRG 1 cut(s) 482
ApeKI GCWGC 3 cut(s) 338, 767, 973
ApoI RAATTY 1 cut(s) 955
ArsI GACNNNNNNTTYG 2 cut(s) 868, 900
AspS9I GGNCC 1 cut(s) 842
AsuC2I CCSGG 2 cut(s) 427, 990
AvaI CYCGRG 1 cut(s) 482
AvaII GGWCC 1 cut(s) 842
BanII GRGCYC 2 cut(s) 866, 1034
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 2 cut(s) 866, 1034
BbvI GCAGC 3 cut(s) 350, 754, 985
BccI CCATC 3 cut(s) 451, 815, 917
BciT130I CCWGG 1 cut(s) 471
BciVI GTATCC 1 cut(s) 411
BcnI CCSGG 2 cut(s) 427, 990
BcoDI GTCTC 2 cut(s) 175, 225
BfmI CTRYAG 1 cut(s) 258
BfuI GTATCC 1 cut(s) 411
BisI GCNGC 3 cut(s) 339, 768, 974
BlsI GCNGC 3 cut(s) 340, 769, 975
Bme1390I CCNGG 3 cut(s) 427, 471, 990
Bme18I GGWCC 1 cut(s) 842
BmeT110I CYCGRG 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 842
BmiI GGNNCC 2 cut(s) 475, 928
BmrFI CCNGG 3 cut(s) 427, 471, 990
BmsI GCATC 3 cut(s) 805, 975, 977
BpiI GAAGAC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 157
BpuMI CCSGG 2 cut(s) 427, 990
Bsa29I ATCGAT 1 cut(s) 289
BsaBI GATNNNNATC 2 cut(s) 57, 1047
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 220, 700
BsaWI WCCGGW 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 483
Bse118I RCCGGY 1 cut(s) 929
Bse3DI GCAATG 2 cut(s) 137, 864
Bse8I GATNNNNATC 2 cut(s) 57, 1047
BseBI CCWGG 1 cut(s) 471
BseCI ATCGAT 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 220, 700
BseGI GGATG 1 cut(s) 796
BseJI GATNNNNATC 2 cut(s) 57, 1047
BseLI CCNNNNNNNGG 1 cut(s) 483
BseMI GCAATG 2 cut(s) 137, 864
BseMII CTCAG 2 cut(s) 290, 842
BseRI GAGGAG 3 cut(s) 41, 357, 840
BseXI GCAGC 3 cut(s) 350, 754, 985
BshVI ATCGAT 1 cut(s) 289
BsiHKAI GWGCWC 2 cut(s) 866, 1034
BsiHKCI CYCGRG 1 cut(s) 482
BsiSI CCGG 6 cut(s) 235, 426, 816, 854, 930, 989
BslI CCNNNNNNNGG 1 cut(s) 483
BsmAI GTCTC 2 cut(s) 175, 225
Bso31I GGTCTC 1 cut(s) 225
BsoBI CYCGRG 1 cut(s) 482
Bsp1286I GDGCHC 2 cut(s) 866, 1034
Bsp1407I TGTACA 1 cut(s) 212
Bsp143I GATC 9 cut(s) 5, 52, 286, 502, 571, 591, 619, 824, 1048
BspACI CCGC 1 cut(s) 966
BspCNI CTCAG 2 cut(s) 291, 841
BspDI ATCGAT 1 cut(s) 289
BspHI TCATGA 1 cut(s) 1039
BspLI GGNNCC 2 cut(s) 475, 928
BspPI GGATC 4 cut(s) 510, 599, 832, 1056
BspTNI GGTCTC 1 cut(s) 225
BsrDI GCAATG 2 cut(s) 137, 864
BsrFI RCCGGY 1 cut(s) 929
BsrGI TGTACA 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 929
BssECI CCNNGG 2 cut(s) 220, 700
BssMI GATC 9 cut(s) 5, 52, 286, 502, 571, 591, 619, 824, 1048
BssT1I CCWWGG 1 cut(s) 700
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 2 cut(s) 217, 748
Bst6I CTCTTC 1 cut(s) 18
BstAUI TGTACA 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 299, 828
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 796
BstKTI GATC 9 cut(s) 8, 55, 289, 505, 574, 594, 622, 827, 1051
BstMAI GTCTC 2 cut(s) 175, 225
BstMBI GATC 9 cut(s) 5, 52, 286, 502, 571, 591, 619, 824, 1048
BstMWI GCNNNNNNNGC 1 cut(s) 304
BstNI CCWGG 1 cut(s) 471
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 3 cut(s) 425, 469, 988
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 3 cut(s) 350, 754, 985
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 2 cut(s) 502, 824
BstYI RGATCY 2 cut(s) 502, 824
Bsu15I ATCGAT 1 cut(s) 289
BsuI GTATCC 1 cut(s) 411
BsuTUI ATCGAT 1 cut(s) 289
BtgI CCRYGG 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 954
BtsCI GGATG 1 cut(s) 796
CciI TCATGA 1 cut(s) 1039
Cfr10I RCCGGY 1 cut(s) 929
Cfr13I GGNCC 1 cut(s) 842
ClaI ATCGAT 1 cut(s) 289
Csp6I GTAC 3 cut(s) 213, 254, 673
CviAII CATG 5 cut(s) 88, 383, 914, 982, 1040
CviQI GTAC 3 cut(s) 213, 254, 673
DdeI CTNAG 2 cut(s) 299, 828
DpnI GATC 9 cut(s) 7, 54, 288, 504, 573, 593, 621, 826, 1050
DpnII GATC 9 cut(s) 5, 52, 286, 502, 571, 591, 619, 824, 1048
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Ecl136II GAGCTC 2 cut(s) 864, 1032
Eco130I CCWWGG 1 cut(s) 700
Eco24I GRGCYC 2 cut(s) 866, 1034
Eco31I GGTCTC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 842
Eco53kI GAGCTC 2 cut(s) 864, 1032
Eco57I CTGAAG 3 cut(s) 123, 669, 923
Eco88I CYCGRG 1 cut(s) 482
EcoICRI GAGCTC 2 cut(s) 864, 1032
EcoRI GAATTC 1 cut(s) 955
EcoRII CCWGG 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 700
EcoT38I GRGCYC 2 cut(s) 866, 1034
ErhI CCWWGG 1 cut(s) 700
FaeI CATG 5 cut(s) 91, 386, 917, 985, 1043
FaiI YATR 8 cut(s) 89, 211, 384, 880, 915, 983, 1041, 1056
FatI CATG 5 cut(s) 87, 382, 913, 981, 1039
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 3 cut(s) 339, 768, 974
FokI GGATG 1 cut(s) 783
FriOI GRGCYC 2 cut(s) 866, 1034
Fsp4HI GCNGC 3 cut(s) 339, 768, 974
GluI GCNGC 3 cut(s) 339, 768, 974
HapII CCGG 6 cut(s) 235, 426, 816, 854, 930, 989
Hin1II CATG 5 cut(s) 91, 386, 917, 985, 1043
HinfI GANTC 9 cut(s) 31, 151, 159, 168, 301, 437, 1036, 1070, 1076
HpaII CCGG 6 cut(s) 235, 426, 816, 854, 930, 989
Hpy166II GTNNAC 2 cut(s) 76, 355
Hpy188I TCNGA 3 cut(s) 419, 663, 1075
Hpy8I GTNNAC 2 cut(s) 76, 355
Hpy99I CGWCG 2 cut(s) 605, 923
HpyAV CCTTC 3 cut(s) 290, 813, 894
HpyCH4III ACNGT 2 cut(s) 217, 748
HpyCH4IV ACGT 3 cut(s) 351, 464, 741
HpyCH4V TGCA 2 cut(s) 94, 796
HpyF10VI GCNNNNNNNGC 1 cut(s) 304
HpyF3I CTNAG 2 cut(s) 299, 828
HpySE526I ACGT 3 cut(s) 351, 464, 741
Hsp92II CATG 5 cut(s) 91, 386, 917, 985, 1043
Kzo9I GATC 9 cut(s) 5, 52, 286, 502, 571, 591, 619, 824, 1048
LmnI GCTCC 2 cut(s) 896, 926
Lsp1109I GCAGC 3 cut(s) 350, 754, 985
LweI GCATC 3 cut(s) 805, 975, 977
MaeII ACGT 3 cut(s) 351, 464, 741
MaeIII GTNAC 2 cut(s) 327, 742
MalI GATC 9 cut(s) 7, 54, 288, 504, 573, 593, 621, 826, 1050
MboI GATC 9 cut(s) 5, 52, 286, 502, 571, 591, 619, 824, 1048
MboII GAAGA 8 cut(s) 35, 114, 218, 406, 438, 507, 701, 929
MflI RGATCY 2 cut(s) 502, 824
MhlI GDGCHC 2 cut(s) 866, 1034
MluCI AATT 5 cut(s) 374, 496, 653, 790, 955
MlyI GAGTC 2 cut(s) 177, 310
MnlI CCTC 8 cut(s) 19, 231, 375, 378, 669, 810, 817, 861
MseI TTAA 4 cut(s) 80, 390, 536, 633
MslI CAYNNNNRTG 1 cut(s) 912
MspI CCGG 6 cut(s) 235, 426, 816, 854, 930, 989
MspR9I CCNGG 3 cut(s) 427, 471, 990
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 1 cut(s) 304
NciI CCSGG 2 cut(s) 427, 990
NdeII GATC 9 cut(s) 5, 52, 286, 502, 571, 591, 619, 824, 1048
NlaIII CATG 5 cut(s) 91, 386, 917, 985, 1043
NlaIV GGNNCC 2 cut(s) 475, 928
NmeAIII GCCGAG 1 cut(s) 132
NspI RCATGY 1 cut(s) 91
PagI TCATGA 1 cut(s) 1039
PciI ACATGT 1 cut(s) 87
PfeI GAWTC 7 cut(s) 31, 151, 159, 437, 1036, 1070, 1076
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 3 cut(s) 340, 769, 975
PleI GAGTC 2 cut(s) 176, 309
PpsI GAGTC 2 cut(s) 176, 309
PscI ACATGT 1 cut(s) 87
Psp124BI GAGCTC 2 cut(s) 866, 1034
Psp1406I AACGTT 2 cut(s) 464, 741
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 2 cut(s) 475, 928
PspPI GGNCC 1 cut(s) 842
PsuI RGATCY 2 cut(s) 502, 824
RsaI GTAC 3 cut(s) 214, 255, 674
RsaNI GTAC 3 cut(s) 213, 254, 673
RseI CAYNNNNRTG 1 cut(s) 912
SacI GAGCTC 2 cut(s) 866, 1034
SaqAI TTAA 4 cut(s) 80, 390, 536, 633
SatI GCNGC 3 cut(s) 339, 768, 974
Sau3AI GATC 9 cut(s) 5, 52, 286, 502, 571, 591, 619, 824, 1048
Sau96I GGNCC 1 cut(s) 842
SchI GAGTC 2 cut(s) 177, 310
ScrFI CCNGG 3 cut(s) 427, 471, 990
SduI GDGCHC 2 cut(s) 866, 1034
SfaNI GCATC 3 cut(s) 805, 975, 977
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 842
SmiMI CAYNNNNRTG 1 cut(s) 912
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 5 cut(s) 374, 496, 653, 790, 955
SsiI CCGC 1 cut(s) 966
SstI GAGCTC 2 cut(s) 866, 1034
StyD4I CCNGG 3 cut(s) 425, 469, 988
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 2 cut(s) 217, 748
TaiI ACGT 3 cut(s) 354, 467, 744
TaqI TCGA 7 cut(s) 166, 229, 289, 333, 921, 953, 1034
TaqII GACCGA 1 cut(s) 830
TasI AATT 5 cut(s) 374, 496, 653, 790, 955
TatI WGTACW 1 cut(s) 212
TfiI GAWTC 7 cut(s) 31, 151, 159, 437, 1036, 1070, 1076
Tru1I TTAA 4 cut(s) 80, 390, 536, 633
Tru9I TTAA 4 cut(s) 80, 390, 536, 633
TseI GCWGC 3 cut(s) 338, 767, 973
TspDTI ATGAA 3 cut(s) 36, 1007, 1083
TspGWI ACGGA 4 cut(s) 209, 241, 660, 1061
VpaK11BI GGWCC 1 cut(s) 842
XapI RAATTY 1 cut(s) 955
XceI RCATGY 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.