Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007661

Physical Location & Seq

Genomic Coordinates Forward (+)

3931592 .. 3934166

Gene Structure 2575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG057400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGATGACAAATCCAAGGGGAAAGGGTTTTCAAGCAAAGCAAGAGGGCCAAAACAACAACAACAATGATGGGAATATTATGACTAGTTATAACAAGGCAGCTTCATCTAGTACTACTACTTCAAGGCAATGGTCTGGATTTCGAAATCCAAGGATTGTTCGTGTCTCGCGAACCTTTGGCGGAAAAGACAGGCACAGCAAGGTCTCAACTGTGAGGGGATTGAGAGACAGAAGAATTAGGCTTTCAGTGCCAACAGCAATTCAGTTATATGACCTTCAAGACAGGCTTGGTCTTAGCCAACCTAGCAAGGTAATAGATTGGTTGCTTGAAGTTACTGAAGATGATATTGATAAGCTCCCACCACTCCAACTACTTCCTCATCATGGTTTGCTCAATACTACTAGTTCTGCTCATCATCAATTTCATCATCATCAACAGCAAATTCTCAATCCTCTTAATGTTCCTTTCTTTGATGTGAATCAAAGGCTTACTGAGCAAGTAGTACTTGATGAGAGTAAAGGCAAGTCAATCAAAGCAAATGATCATCAACGAGATCATGATGATGAAGCCTTGGCTCAGAAGTTATTTCCTATAGGCAATATGCCTTCTTCCATACCTGGATTGCTGAACAATGCCATGGCATACAACAACTACTTTCACCATCACAGTTCAGAGCCTTCGAGTTTGTCTCTTTCTCAGTTTGGTAGCAGTCATGGATTTCCACTAATGCCTCAAATGGATCATATGATGAGTAGTAACAATGGCTTATCATTTTCAACTACTTCAATGCCAATGGCATCTGGGTCTCAATTGTTCTTCTGTCCATCAACAGCTACGCCGGTACCTTCACTTTTTGGTCCTTATGCGCCCTACATTACCACTACTACCCCAGTAGTAGAGAATAGTAGTACCAGTAATGATCGTCAGCCAGAACTTAGACGAACCAATAACCACATGATCCAATTGTTGAGCTCATCAAGTACTACTAGTACTACTCTACAGAATTTTGAACCTAATAATGCTCTCATGCCTTCTCTTCAATATTCTATTGGCTCATCTTTGAGATCCTTTCCAACATTGGTTAATCCGAAGCTCCATTCACAAAACAATGATGGATCATCAAGCCAACCAGACAAGGACCGTACTGGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

384

Amino Acids

42.65

Weight (kDa)

8.93

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	61 - 174	1.8e-25	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08070 AT5G08070 AT5G60970
fragaria_vesca	FvH4_5g13710 FvH4_5g13710
malus_domestica	MD06G1226300.v1.1 MD14G1213400.v1.1
prunus_persica	Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1
pyrus_communis	pycom06g18050 pycom14g17680
rosa_chinensis	RchiOBHm_Chr7g0183231
rosa_laevigata	RLG00000005063
rosa_multiflora	Rmu_sc0008744.1_g000013
rosa_roxburghii	Rroxscaffold_3G00270630
rosa_rugosa	Rorug06G0455400 Rorug06G0455400 Rorug06G0455400
rosa_samantha	Rh7AG057400 Rh7BG057300 Rh7CG058900 Rh7DG057100
rosa_wichuraiana	Rw7G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
Acc65I	GGTACC	1 cut(s)	841
AccB1I	GGYRCC	1 cut(s)	841
AccII	CGCG	1 cut(s)	169
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	4 cut(s)	747, 952, 1059, 1123
AcsI	RAATTY	2 cut(s)	441, 1003
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	7 cut(s)	112, 504, 843, 910, 982, 991, 1144
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	8 cut(s)	32, 123, 278, 329, 777, 786, 1010, 1040
AhlI	ACTAGT	3 cut(s)	83, 401, 986
AjnI	CCWGG	1 cut(s)	616
AluBI	AGCT	5 cut(s)	101, 355, 833, 972, 1093
AluI	AGCT	5 cut(s)	101, 355, 833, 972, 1093
Alw21I	GWGCWC	1 cut(s)	974
Alw26I	GTCTC	5 cut(s)	169, 208, 219, 693, 810
AlwI	GGATC	4 cut(s)	747, 952, 1059, 1123
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	441, 1003
Asp718I	GGTACC	1 cut(s)	841
AspLEI	GCGC	1 cut(s)	868
AspS9I	GGNCC	3 cut(s)	46, 857, 1138
AsuHPI	GGTGA	1 cut(s)	650
AsuII	TTCGAA	1 cut(s)	142
AvaII	GGWCC	2 cut(s)	857, 1138
BaeI	ACNNNNGTAYC	2 cut(s)	825, 858
BanI	GGYRCC	1 cut(s)	841
BanII	GRGCYC	1 cut(s)	974
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
Bbv12I	GWGCWC	1 cut(s)	974
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	4 cut(s)	62, 669, 832, 1106
BciT130I	CCWGG	1 cut(s)	618
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	5 cut(s)	169, 208, 219, 693, 810
BcuI	ACTAGT	3 cut(s)	83, 401, 986
BfaI	CTAG	5 cut(s)	84, 108, 303, 402, 987
BfmI	CTRYAG	2 cut(s)	591, 998
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmcAI	AGTACT	4 cut(s)	112, 504, 982, 991
Bme1390I	CCNGG	1 cut(s)	618
Bme18I	GGWCC	2 cut(s)	857, 1138
BmgT120I	GGNCC	3 cut(s)	46, 857, 1138
BmiI	GGNNCC	2 cut(s)	843, 1150
BmrFI	CCNGG	1 cut(s)	618
BmrI	ACTGGG	1 cut(s)	884
BmsI	GCATC	1 cut(s)	806
BmuI	ACTGGG	1 cut(s)	884
BplI	GAGNNNNNCTC	2 cut(s)	673, 705
Bpu14I	TTCGAA	1 cut(s)	142
BsaBI	GATNNNNATC	1 cut(s)	477
BsaI	GGTCTC	2 cut(s)	208, 810
BsaJI	CCNNGG	4 cut(s)	14, 149, 570, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	1 cut(s)	838
Bse1I	ACTGG	3 cut(s)	890, 912, 1150
Bse3DI	GCAATG	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	4 cut(s)	14, 149, 570, 636
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	3 cut(s)	483, 590, 710
BseNI	ACTGG	3 cut(s)	890, 912, 1150
BseXI	GCAGC	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	841
BsiHKAI	GWGCWC	1 cut(s)	974
BsiSI	CCGG	1 cut(s)	839
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	5 cut(s)	169, 208, 219, 693, 810
BsnI	GGCC	1 cut(s)	48
Bso31I	GGTCTC	2 cut(s)	208, 810
Bsp119I	TTCGAA	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	974
Bsp143I	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
Bsp19I	CCATGG	1 cut(s)	636
Bsp68I	TCGCGA	1 cut(s)	169
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	3 cut(s)	484, 589, 709
BspFNI	CGCG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	2 cut(s)	843, 1150
BspPI	GGATC	4 cut(s)	747, 952, 1059, 1123
BspT104I	TTCGAA	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	841
BspTNI	GGTCTC	2 cut(s)	208, 810
BsrDI	GCAATG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	838
BsrI	ACTGG	3 cut(s)	890, 912, 1150
BssAI	RCCGGY	1 cut(s)	838
BssECI	CCNNGG	4 cut(s)	14, 149, 570, 636
BssMI	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
BssT1I	CCWWGG	4 cut(s)	14, 149, 570, 636
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	3 cut(s)	211, 668, 1142
Bst6I	CTCTTC	1 cut(s)	1041
BstBI	TTCGAA	1 cut(s)	142
BstDEI	CTNAG	5 cut(s)	293, 492, 576, 696, 935
BstDSI	CCRYGG	1 cut(s)	636
BstFNI	CGCG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	868
BstKTI	GATC	7 cut(s)	544, 556, 742, 922, 960, 1067, 1118
BstMAI	GTCTC	5 cut(s)	169, 208, 219, 693, 810
BstMBI	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
BstMWI	GCNNNNNNNGC	3 cut(s)	247, 303, 493
BstNI	CCWGG	1 cut(s)	618
BstSCI	CCNGG	1 cut(s)	616
BstSFI	CTRYAG	2 cut(s)	591, 998
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	1064
BstYI	RGATCY	1 cut(s)	1064
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	636
BtsIMutI	CAGTG	1 cut(s)	252
BtuMI	TCGCGA	1 cut(s)	169
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	1 cut(s)	868
Cfr10I	RCCGGY	1 cut(s)	838
Cfr13I	GGNCC	3 cut(s)	46, 857, 1138
Csp6I	GTAC	7 cut(s)	111, 503, 842, 909, 981, 990, 1143
CviAII	CATG	6 cut(s)	383, 557, 637, 713, 955, 1027
CviQI	GTAC	7 cut(s)	111, 503, 842, 909, 981, 990, 1143
DdeI	CTNAG	5 cut(s)	293, 492, 576, 696, 935
DpnI	GATC	7 cut(s)	543, 555, 741, 921, 959, 1066, 1117
DpnII	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
Eam1104I	CTCTTC	1 cut(s)	1041
EarI	CTCTTC	1 cut(s)	1041
EciI	GGCGGA	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	972
Eco130I	CCWWGG	4 cut(s)	14, 149, 570, 636
Eco24I	GRGCYC	1 cut(s)	974
Eco31I	GGTCTC	2 cut(s)	208, 810
Eco47I	GGWCC	2 cut(s)	857, 1138
Eco53kI	GAGCTC	1 cut(s)	972
Eco57I	CTGAAG	1 cut(s)	357
EcoICRI	GAGCTC	1 cut(s)	972
EcoRII	CCWGG	1 cut(s)	616
EcoT14I	CCWWGG	4 cut(s)	14, 149, 570, 636
EcoT38I	GRGCYC	1 cut(s)	974
ErhI	CCWWGG	4 cut(s)	14, 149, 570, 636
FaeI	CATG	6 cut(s)	386, 560, 640, 716, 958, 1030
FalI	AAGNNNNNCTT	4 cut(s)	270, 302, 489, 521
FatI	CATG	6 cut(s)	382, 556, 636, 712, 954, 1026
FauNDI	CATATG	1 cut(s)	744
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	974
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	5 cut(s)	84, 108, 303, 402, 987
GlaI	GCGC	1 cut(s)	867
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	839
HhaI	GCGC	1 cut(s)	868
Hin1II	CATG	6 cut(s)	386, 560, 640, 716, 958, 1030
Hin6I	GCGC	1 cut(s)	866
HinP1I	GCGC	1 cut(s)	866
HinfI	GANTC	1 cut(s)	478
HpaII	CCGG	1 cut(s)	839
HphI	GGTGA	1 cut(s)	650
Hpy188I	TCNGA	3 cut(s)	579, 673, 1089
Hpy188III	TCNNGA	4 cut(s)	135, 168, 278, 557
HpyAV	CCTTC	5 cut(s)	284, 615, 687, 855, 1041
HpyCH4III	ACNGT	3 cut(s)	211, 668, 1142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	247, 303, 493
HpyF3I	CTNAG	5 cut(s)	293, 492, 576, 696, 935
Hsp92II	CATG	6 cut(s)	386, 560, 640, 716, 958, 1030
HspAI	GCGC	1 cut(s)	866
KpnI	GGTACC	1 cut(s)	845
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
LmnI	GCTCC	2 cut(s)	360, 1098
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	806
MaeI	CTAG	5 cut(s)	84, 108, 303, 402, 987
MaeIII	GTNAC	2 cut(s)	331, 755
MalI	GATC	7 cut(s)	543, 555, 741, 921, 959, 1066, 1117
MboI	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
MboII	GAAGA	5 cut(s)	243, 350, 600, 808, 1028
MfeI	CAATTG	2 cut(s)	809, 962
MflI	RGATCY	1 cut(s)	1064
MhlI	GDGCHC	1 cut(s)	974
MluCI	AATT	7 cut(s)	234, 258, 419, 441, 809, 962, 1003
MmeI	TCCRAC	2 cut(s)	391, 1097
MnlI	CCTC	5 cut(s)	37, 207, 387, 462, 741
MseI	TTAA	2 cut(s)	456, 1083
MslI	CAYNNNNRTG	1 cut(s)	561
MspI	CCGG	1 cut(s)	839
MspR9I	CCNGG	1 cut(s)	618
MunI	CAATTG	2 cut(s)	809, 962
MvaI	CCWGG	1 cut(s)	618
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	247, 303, 493
NcoI	CCATGG	1 cut(s)	636
NdeI	CATATG	1 cut(s)	744
NdeII	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
NlaIII	CATG	6 cut(s)	386, 560, 640, 716, 958, 1030
NlaIV	GGNNCC	2 cut(s)	843, 1150
NruI	TCGCGA	1 cut(s)	169
NspV	TTCGAA	1 cut(s)	142
PagI	TCATGA	1 cut(s)	556
PcsI	WCGNNNNNNNCGW	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	478
PkrI	GCNGC	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	974
Psp6I	CCWGG	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	2 cut(s)	843, 1150
PspPI	GGNCC	3 cut(s)	46, 857, 1138
PsuI	RGATCY	1 cut(s)	1064
RruI	TCGCGA	1 cut(s)	169
RsaI	GTAC	7 cut(s)	112, 504, 843, 910, 982, 991, 1144
RsaNI	GTAC	7 cut(s)	111, 503, 842, 909, 981, 990, 1143
RseI	CAYNNNNRTG	1 cut(s)	561
SacI	GAGCTC	1 cut(s)	974
SaqAI	TTAA	2 cut(s)	456, 1083
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	7 cut(s)	541, 553, 739, 919, 957, 1064, 1115
Sau96I	GGNCC	3 cut(s)	46, 857, 1138
ScaI	AGTACT	4 cut(s)	112, 504, 982, 991
ScrFI	CCNGG	1 cut(s)	618
SduI	GDGCHC	1 cut(s)	974
SfaNI	GCATC	1 cut(s)	806
SfcI	CTRYAG	2 cut(s)	591, 998
SfuI	TTCGAA	1 cut(s)	142
SinI	GGWCC	2 cut(s)	857, 1138
SmiMI	CAYNNNNRTG	1 cut(s)	561
SpeI	ACTAGT	3 cut(s)	83, 401, 986
Sse9I	AATT	7 cut(s)	234, 258, 419, 441, 809, 962, 1003
SsiI	CCGC	1 cut(s)	180
SspI	AATATT	2 cut(s)	76, 1043
SspMI	CTAG	5 cut(s)	84, 108, 303, 402, 987
SstI	GAGCTC	1 cut(s)	974
StyD4I	CCNGG	1 cut(s)	616
StyI	CCWWGG	4 cut(s)	14, 149, 570, 636
TaaI	ACNGT	3 cut(s)	211, 668, 1142
TaqI	TCGA	2 cut(s)	142, 680
TasI	AATT	7 cut(s)	234, 258, 419, 441, 809, 962, 1003
TatI	WGTACW	4 cut(s)	110, 502, 980, 989
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	2 cut(s)	456, 1083
Tru9I	TTAA	2 cut(s)	456, 1083
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	93, 413, 579
TspRI	CASTG	1 cut(s)	252
VpaK11BI	GGWCC	2 cut(s)	857, 1138
XapI	RAATTY	2 cut(s)	441, 1003
XspI	CTAG	5 cut(s)	84, 108, 303, 402, 987
ZrmI	AGTACT	4 cut(s)	112, 504, 982, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.