Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007661

Physical Location & Seq

Genomic Coordinates Forward (+)

35690088 .. 35691110

Gene Structure 1023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1226300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGATAACAAATTCAAGGGACAAGGGTTTCCAAGCAAAGCAAGAGGGCCACAACAACAACAATAACAATGACGGGAGCAACAATAGTAGTTTTCATAAGGCATCATCATCAAGTACTACTACTTCAAGGCAATGGTCTGGATTTAGAAATCCAAGGATCGTACGTGTTTCGCGTACTTTCGGTGGGAAAGATAGGCACAGCAAGGTTTCCACAGTGAGGGGATTGAGGGACAGGAGAATTAGGCTTTCAGTACCAACGGCCATTCAATTATATGATCTTCAAGATAGGCTTGGTCTTAGCCAACCTAGCAAGGTAATAGACTGGCTGCTTGACATTACGGAACAAGATATCGATAAGCTCCCTCCACTTCAAGTTCCTCATGGATTTGGTCATCAATTTCATCAACCAATGCTAAATCCTCATCAAGTTAGTAATTCTCTTGTTGCTCCTTTCTTTGATGTAAATTCTACTTTTATGGAGGCAGACCAAGTTGATCATCAAGAAGTTCGTGATCAAGCAAAAGGCAAGTCGATCAAGACAAACGACGGACAAGATGATCAAAATCGTCATGATCACGAAGGAAATGTTGGACAACTCTTAGCTCAAAAGCTATTTCCCATAGGCTCTTCTTCCATACCTGGCATGCTAAATAATGCAATGGCATACAACTACTATCACAACTATTCAGAGCCTTCAACGCTATCTCTAGCGCAGTTTGGTAGCCATGGATTTCCACAAGTACCACAATTAGATCAGCATCATAGTCACATGATGAGTACTAATGCCTTATCATTTTCAACTCCAATGCCATCTGTTTCTCAATTATTCTTCCGTCCACCTACAGCAACACCGATGCTTTTCGGTTCATATCCTCCATATATTACCAATCCAATAGTGGAGGGTACTAGTACTGCTACCGATCAGCCTCGACAAGCCAACCATTTCCAATTTTTGAGCTCACCAAGTAATTCACAAAATTTCCTAGCTAACAATGCTCTCATGCCTCCCTCTTCATTCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

341

Amino Acids

37.95

Weight (kDa)

8.07

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	62 - 182	4e-26	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08070 AT5G08070 AT5G60970
fragaria_vesca	FvH4_5g13710 FvH4_5g13710
malus_domestica	MD06G1226300.v1.1 MD14G1213400.v1.1
prunus_persica	Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1
pyrus_communis	pycom06g18050 pycom14g17680
rosa_chinensis	RchiOBHm_Chr7g0183231
rosa_laevigata	RLG00000005063
rosa_multiflora	Rmu_sc0008744.1_g000013
rosa_roxburghii	Rroxscaffold_3G00270630
rosa_rugosa	Rorug06G0455400 Rorug06G0455400 Rorug06G0455400
rosa_samantha	Rh7AG057400 Rh7BG057300 Rh7CG058900 Rh7DG057100
rosa_wichuraiana	Rw7G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	172
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	3 cut(s)	10, 463, 976
AfaI	GTAC	8 cut(s)	115, 162, 175, 252, 741, 778, 904, 910
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	7 cut(s)	15, 126, 266, 281, 371, 696, 798
AhlI	ACTAGT	1 cut(s)	905
AjnI	CCWGG	1 cut(s)	637
AjuI	GAANNNNNNNTTGG	2 cut(s)	570, 602
AluBI	AGCT	5 cut(s)	358, 602, 610, 957, 986
AluI	AGCT	5 cut(s)	358, 602, 610, 957, 986
Alw21I	GWGCWC	1 cut(s)	959
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	2 cut(s)	46, 258
ApeKI	GCWGC	1 cut(s)	325
ApoI	RAATTY	3 cut(s)	10, 463, 976
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	951
BanII	GRGCYC	1 cut(s)	959
BarI	GAAGNNNNNNTAC	2 cut(s)	106, 138
Bbv12I	GWGCWC	1 cut(s)	959
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	1 cut(s)	817
BceAI	ACGGC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	639
BclI	TGATCA	4 cut(s)	493, 511, 556, 571
BcuI	ACTAGT	1 cut(s)	905
BfaI	CTAG	4 cut(s)	306, 707, 906, 983
BfmI	CTRYAG	1 cut(s)	840
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
BmcAI	AGTACT	3 cut(s)	115, 778, 910
Bme1390I	CCNGG	1 cut(s)	639
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	639
BmsI	GCATC	3 cut(s)	110, 766, 843
Bsa29I	ATCGAT	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	164
BsaBI	GATNNNNATC	2 cut(s)	561, 756
BsaJI	CCNNGG	2 cut(s)	152, 724
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	2 cut(s)	137, 663
Bse8I	GATNNNNATC	2 cut(s)	561, 756
BseBI	CCWGG	1 cut(s)	639
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	152, 724
BseJI	GATNNNNATC	2 cut(s)	561, 756
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	2 cut(s)	137, 663
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	48, 260
BshVI	ATCGAT	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	959
BsiWI	CGTACG	1 cut(s)	160
BslFI	GGGAC	2 cut(s)	32, 242
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmFI	GGGAC	2 cut(s)	32, 242
BsnI	GGCC	2 cut(s)	48, 260
Bsp1286I	GDGCHC	1 cut(s)	959
Bsp143I	GATC	9 cut(s)	156, 274, 493, 511, 531, 556, 571, 751, 919
Bsp19I	CCATGG	1 cut(s)	724
BspANI	GGCC	2 cut(s)	48, 260
BspDI	ATCGAT	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	172
BspHI	TCATGA	1 cut(s)	568
BspPI	GGATC	1 cut(s)	164
BspQI	GCTCTTC	1 cut(s)	631
BsrDI	GCAATG	2 cut(s)	137, 663
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	152, 724
BssMI	GATC	9 cut(s)	156, 274, 493, 511, 531, 556, 571, 751, 919
BssT1I	CCWWGG	2 cut(s)	152, 724
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	631, 1015
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	644
BstDEI	CTNAG	2 cut(s)	296, 598
BstDSI	CCRYGG	1 cut(s)	724
BstFNI	CGCG	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	9 cut(s)	159, 277, 496, 514, 534, 559, 574, 754, 922
BstMBI	GATC	9 cut(s)	156, 274, 493, 511, 531, 556, 571, 751, 919
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 697, 992
BstNI	CCWGG	1 cut(s)	639
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	1 cut(s)	637
BstSFI	CTRYAG	1 cut(s)	840
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	312
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	48, 260
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	724
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	644
CciI	TCATGA	1 cut(s)	568
CfoI	GCGC	1 cut(s)	712
Cfr13I	GGNCC	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	351
Csp6I	GTAC	8 cut(s)	114, 161, 174, 251, 740, 777, 903, 909
CviAII	CATG	6 cut(s)	380, 569, 643, 725, 769, 1000
CviQI	GTAC	8 cut(s)	114, 161, 174, 251, 740, 777, 903, 909
DdeI	CTNAG	2 cut(s)	296, 598
DpnI	GATC	9 cut(s)	158, 276, 495, 513, 533, 558, 573, 753, 921
DpnII	GATC	9 cut(s)	156, 274, 493, 511, 531, 556, 571, 751, 919
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	2 cut(s)	631, 1015
EarI	CTCTTC	2 cut(s)	631, 1015
Ecl136II	GAGCTC	1 cut(s)	957
Eco130I	CCWWGG	2 cut(s)	152, 724
Eco24I	GRGCYC	1 cut(s)	959
Eco32I	GATATC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	957
EcoICRI	GAGCTC	1 cut(s)	957
EcoRII	CCWGG	1 cut(s)	637
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	2 cut(s)	152, 724
EcoT38I	GRGCYC	1 cut(s)	959
ErhI	CCWWGG	2 cut(s)	152, 724
FaeI	CATG	6 cut(s)	383, 572, 646, 728, 772, 1003
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	2 cut(s)	32, 242
FatI	CATG	6 cut(s)	379, 568, 642, 724, 768, 999
FbaI	TGATCA	4 cut(s)	493, 511, 556, 571
Fnu4HI	GCNGC	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	959
Fsp4HI	GCNGC	1 cut(s)	326
FspBI	CTAG	4 cut(s)	306, 707, 906, 983
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	1 cut(s)	326
HaeIII	GGCC	2 cut(s)	48, 260
HhaI	GCGC	1 cut(s)	712
Hin1II	CATG	6 cut(s)	383, 572, 646, 728, 772, 1003
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HphI	GGTGA	1 cut(s)	951
Hpy166II	GTNNAC	1 cut(s)	836
Hpy188I	TCNGA	1 cut(s)	688
Hpy188III	TCNNGA	7 cut(s)	138, 281, 500, 509, 535, 569, 575
Hpy8I	GTNNAC	1 cut(s)	836
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	2 cut(s)	572, 702
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 697, 992
HpyF3I	CTNAG	2 cut(s)	296, 598
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	6 cut(s)	383, 572, 646, 728, 772, 1003
HspAI	GCGC	1 cut(s)	710
Ksp22I	TGATCA	4 cut(s)	493, 511, 556, 571
Kzo9I	GATC	9 cut(s)	156, 274, 493, 511, 531, 556, 571, 751, 919
LguI	GCTCTTC	1 cut(s)	631
LmnI	GCTCC	3 cut(s)	75, 363, 451
LpnPI	CCDG	5 cut(s)	123, 217, 307, 624, 651
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	3 cut(s)	110, 766, 843
MaeI	CTAG	4 cut(s)	306, 707, 906, 983
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	764
MalI	GATC	9 cut(s)	158, 276, 495, 513, 533, 558, 573, 753, 921
MboI	GATC	9 cut(s)	156, 274, 493, 511, 531, 556, 571, 751, 919
MboII	GAAGA	5 cut(s)	269, 618, 621, 820, 1002
MhlI	GDGCHC	1 cut(s)	959
MmeI	TCCRAC	1 cut(s)	568
MspR9I	CCNGG	1 cut(s)	639
MvaI	CCWGG	1 cut(s)	639
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	3 cut(s)	306, 697, 992
NcoI	CCATGG	1 cut(s)	724
NdeII	GATC	9 cut(s)	156, 274, 493, 511, 531, 556, 571, 751, 919
NlaIII	CATG	6 cut(s)	383, 572, 646, 728, 772, 1003
NmuCI	GTSAC	1 cut(s)	764
NspI	RCATGY	1 cut(s)	646
PaeI	GCATGC	1 cut(s)	646
PagI	TCATGA	1 cut(s)	568
PciSI	GCTCTTC	1 cut(s)	631
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
Pfl23II	CGTACG	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	327
Ppu21I	YACGTR	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	959
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspLI	CGTACG	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	8 cut(s)	115, 162, 175, 252, 741, 778, 904, 910
RsaNI	GTAC	8 cut(s)	114, 161, 174, 251, 740, 777, 903, 909
SacI	GAGCTC	1 cut(s)	959
SapI	GCTCTTC	1 cut(s)	631
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	9 cut(s)	156, 274, 493, 511, 531, 556, 571, 751, 919
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	3 cut(s)	115, 778, 910
ScrFI	CCNGG	1 cut(s)	639
SduI	GDGCHC	1 cut(s)	959
SfaNI	GCATC	3 cut(s)	110, 766, 843
SfcI	CTRYAG	1 cut(s)	840
SpeI	ACTAGT	1 cut(s)	905
SphI	GCATGC	1 cut(s)	646
SspMI	CTAG	4 cut(s)	306, 707, 906, 983
SstI	GAGCTC	1 cut(s)	959
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	2 cut(s)	152, 724
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	3 cut(s)	351, 530, 928
TatI	WGTACW	3 cut(s)	113, 776, 908
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	764
TseI	GCWGC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	764
TspDTI	ATGAA	4 cut(s)	83, 389, 855, 1002
TspGWI	ACGGA	3 cut(s)	353, 561, 821
TspRI	CASTG	1 cut(s)	219
XapI	RAATTY	3 cut(s)	10, 463, 976
XceI	RCATGY	1 cut(s)	646
XcmI	CCANNNNNNNNNTGG	1 cut(s)	892
XspI	CTAG	4 cut(s)	306, 707, 906, 983
ZrmI	AGTACT	3 cut(s)	115, 778, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.