Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007661

Physical Location & Seq

Genomic Coordinates Forward (+)

58332678 .. 58335454

Gene Structure 2777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0455400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCAGGCATCAAGAGCTAGGCTTTTCAAGGAATACAAAGAGGTTCAACGAGAGAAAGTTGCAGATCCAGATATTCAATTAGTTTGTGATGACTCCAACATATTTAAATGGACGGCTCTCATCAAGGGACCATCGGAGACTCCATTTGAGGGTGGCATATTCCAGCTTGCTTTTGCAGTTCCTGAGCAGTATCCACTGCAACCCCCACAAGTCAGGTTCTTGACAAAAATTTTCCATCCAAACGTGCATTTTAAGACAGGAGAGATATGCCTTGACATCTTGAAGAATGCATGGAGCCCTGCTTGGACACTTCAGTCTGTTTGTAGGGCTATAATTGCTTTAATGGCCCATCCAGAACCCGATAGCCCACTGAACTGTGATTCAGGCAATCTTCTGCGTGCTGGCGATATCAAGGGGTACCATTCCATGGCAAGAATGTACACTAGGCTTGCCGCCATGCCCAAGAAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

157

Amino Acids

17.73

Weight (kDa)

8.69

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	7 - 146	3.9e-43	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08070 AT5G08070 AT5G60970
fragaria_vesca	FvH4_5g13710 FvH4_5g13710
malus_domestica	MD06G1226300.v1.1 MD14G1213400.v1.1
prunus_persica	Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1
pyrus_communis	pycom06g18050 pycom14g17680
rosa_chinensis	RchiOBHm_Chr7g0183231
rosa_laevigata	RLG00000005063
rosa_multiflora	Rmu_sc0008744.1_g000013
rosa_roxburghii	Rroxscaffold_3G00270630
rosa_rugosa	Rorug06G0455400 Rorug06G0455400 Rorug06G0455400
rosa_samantha	Rh7AG057400 Rh7BG057300 Rh7CG058900 Rh7DG057100
rosa_wichuraiana	Rw7G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	313
Acc65I	GGTACC	1 cut(s)	417
AccB1I	GGYRCC	1 cut(s)	417
AccB7I	CCANNNNNTGG	1 cut(s)	427
AciI	CCGC	1 cut(s)	453
AclWI	GGATC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	2 cut(s)	419, 440
AfiI	CCNNNNNNNGG	3 cut(s)	149, 427, 467
AgsI	TTSAA	4 cut(s)	28, 47, 77, 283
AluBI	AGCT	2 cut(s)	17, 166
AluI	AGCT	2 cut(s)	17, 166
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	59
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	1 cut(s)	345
ApoI	RAATTY	1 cut(s)	228
Asp718I	GGTACC	1 cut(s)	417
AspS9I	GGNCC	2 cut(s)	128, 346
AvaII	GGWCC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	299
BccI	CCATC	3 cut(s)	139, 243, 357
BceAI	ACGGC	1 cut(s)	129
BciVI	GTATCC	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	18, 444
BfuI	GTATCC	1 cut(s)	201
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	128, 346
BmiI	GGNNCC	3 cut(s)	129, 296, 419
BmsI	GCATC	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 427, 467
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	2 cut(s)	235, 349
BseLI	CCNNNNNNNGG	3 cut(s)	149, 427, 467
BseMII	CTCAG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	347
BshNI	GGYRCC	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	3 cut(s)	149, 427, 467
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	426
BspACI	CCGC	1 cut(s)	453
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	3 cut(s)	129, 296, 419
BspPI	GGATC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	417
BsrGI	TGTACA	1 cut(s)	438
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	5 cut(s)	6, 168, 399, 403, 450
BstDEI	CTNAG	1 cut(s)	183
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	235, 349
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	347
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	235, 349
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	194, 368
Cac8I	GCNNGC	5 cut(s)	6, 168, 399, 403, 450
CaiI	CAGNNNCTG	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	128, 346
Csp6I	GTAC	2 cut(s)	418, 439
CviAII	CATG	3 cut(s)	291, 427, 457
CviQI	GTAC	2 cut(s)	418, 439
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DraI	TTTAAA	1 cut(s)	106
DrdI	GACNNNNNNGTC	1 cut(s)	313
DseDI	GACNNNNNNGTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	299
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	296
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	426
EcoT22I	ATGCAT	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	3 cut(s)	294, 430, 460
FaiI	YATR	7 cut(s)	101, 158, 268, 292, 332, 428, 458
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	3 cut(s)	290, 426, 456
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	2 cut(s)	222, 336
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	2 cut(s)	18, 444
GluI	GCNGC	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	347
Hin1II	CATG	3 cut(s)	294, 430, 460
HinfI	GANTC	3 cut(s)	92, 139, 380
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	6 cut(s)	12, 68, 182, 220, 280, 353
Hpy8I	GTNNAC	1 cut(s)	441
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	6 cut(s)	4, 62, 176, 199, 247, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	294, 430, 460
KpnI	GGTACC	1 cut(s)	421
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	9 cut(s)	81, 176, 195, 199, 243, 312, 366, 369, 387
LweI	GCATC	1 cut(s)	17
MaeI	CTAG	2 cut(s)	18, 444
MaeII	ACGT	1 cut(s)	243
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	295, 383
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	3 cut(s)	77, 228, 333
MlyI	GAGTC	2 cut(s)	86, 133
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	2 cut(s)	34, 142
Mph1103I	ATGCAT	1 cut(s)	292
MseI	TTAA	3 cut(s)	105, 252, 341
Mva1269I	GAATGC	1 cut(s)	292
MwoI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	294, 430, 460
NlaIV	GGNNCC	3 cut(s)	129, 296, 419
NsiI	ATGCAT	1 cut(s)	292
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	427
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	2 cut(s)	86, 133
PpsI	GAGTC	2 cut(s)	86, 133
PspN4I	GGNNCC	3 cut(s)	129, 296, 419
PspPI	GGNCC	2 cut(s)	128, 346
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	2 cut(s)	419, 440
RsaNI	GTAC	2 cut(s)	418, 439
SaqAI	TTAA	3 cut(s)	105, 252, 341
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	2 cut(s)	128, 346
SchI	GAGTC	2 cut(s)	86, 133
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	5 cut(s)	19, 45, 168, 218, 246
SfaNI	GCATC	1 cut(s)	17
SinI	GGWCC	1 cut(s)	128
SmiI	ATTTAAAT	1 cut(s)	106
Sse9I	AATT	3 cut(s)	77, 228, 333
SsiI	CCGC	1 cut(s)	453
SspMI	CTAG	2 cut(s)	18, 444
StyI	CCWWGG	1 cut(s)	426
SwaI	ATTTAAAT	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	246
TasI	AATT	3 cut(s)	77, 228, 333
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	3 cut(s)	105, 252, 341
Tru9I	TTAA	3 cut(s)	105, 252, 341
TscAI	CASTG	2 cut(s)	201, 375
TspRI	CASTG	2 cut(s)	201, 375
Van91I	CCANNNNNTGG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	228
XspI	CTAG	2 cut(s)	18, 444
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.