Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007661

Physical Location & Seq

Genomic Coordinates Forward (+)

4239933 .. 4246102

Gene Structure 6170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG058900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTCACTCAGGATGGGTTCGTCGACAACGTTTTGATCAGCTTAGCCAGAGAACTTGGCGGTTTTTGTAAGGTGAAAGCTGAATTATTTGGAAATCAAAGATCGCAAATTCTCAATCCTCTTAATGTTCCTTTCTTTGATGTGAATCAAAGGCTTACTGAGCAAGTAGTACTTGATGAGAGTAAAGGCAAGTCAATCAAAGCAAATGATCATCAACGAGATCATGATGATGAAGCCATGGCTCAGAAGTTATTTCCTATAGGCAATATGCCTTCTTCCATACCTGGATTGCTGAACAATGCCATGGCATACAACAACTACTTTCACCATCACAGTTCAGAGCCTTCGAATTTGTCTCTTTCTCAGTTTGGTAGCAGTCATGGATTTCCACTAATGCCCCAAATGGATCATATGATGAGTAGTAACAATGGCTTATCATTTTCAACTACTTCAATGCCAATGGTATCTGGGTCTCAATTGTTCTTCTGTCCATCAACAGCTACGCCAGTACCTTCACTTTTTGGTCCATATGCGCCCTACATTACCACTACTACCCCAGTAGTAGAGAATAGTAGTACCAGTAATGATCGTCAGCCAGAACTTAGACGAACCAATAACCATATGATCCAATTGTTGAGCTCATCAAGTACTACTAGTACTACTCTACAGAATTTTGAACCTAATAATGCTCTCATGCCTTCTCTTCAATATTCTATTGGCTCATCTTTGAGATCCTTTCCAACATTGGTTAATCCGAAGCTCCATTCACAAAACAATGATGGATCATCAAGCCAACCAGACAAGGACCATACTGGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

273

Amino Acids

29.97

Weight (kDa)

5.88

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08070 AT5G08070 AT5G60970
fragaria_vesca	FvH4_5g13710 FvH4_5g13710
malus_domestica	MD06G1226300.v1.1 MD14G1213400.v1.1
prunus_persica	Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1
pyrus_communis	pycom06g18050 pycom14g17680
rosa_chinensis	RchiOBHm_Chr7g0183231
rosa_laevigata	RLG00000005063
rosa_multiflora	Rmu_sc0008744.1_g000013
rosa_roxburghii	Rroxscaffold_3G00270630
rosa_rugosa	Rorug06G0455400 Rorug06G0455400 Rorug06G0455400
rosa_samantha	Rh7AG057400 Rh7BG057300 Rh7CG058900 Rh7DG057100
rosa_wichuraiana	Rw7G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AciI	CCGC	1 cut(s)	60
AclI	AACGTT	1 cut(s)	30
AclWI	GGATC	4 cut(s)	414, 619, 726, 790
AcsI	RAATTY	3 cut(s)	108, 349, 670
AfaI	GTAC	5 cut(s)	171, 510, 577, 649, 658
AgsI	TTSAA	4 cut(s)	444, 453, 677, 707
AhlI	ACTAGT	1 cut(s)	653
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	5 cut(s)	42, 80, 500, 639, 760
AluI	AGCT	5 cut(s)	42, 80, 500, 639, 760
Alw21I	GWGCWC	1 cut(s)	641
Alw26I	GTCTC	2 cut(s)	360, 477
AlwI	GGATC	4 cut(s)	414, 619, 726, 790
ApoI	RAATTY	3 cut(s)	108, 349, 670
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	2 cut(s)	524, 805
AsuHPI	GGTGA	2 cut(s)	85, 317
AsuII	TTCGAA	1 cut(s)	347
AvaII	GGWCC	2 cut(s)	524, 805
BaeI	ACNNNNGTAYC	2 cut(s)	492, 525
BanII	GRGCYC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	641
BccI	CCATC	4 cut(s)	8, 336, 499, 773
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	2 cut(s)	36, 208
BcoDI	GTCTC	2 cut(s)	360, 477
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	2 cut(s)	258, 665
BlpI	GCTNAGC	1 cut(s)	43
BmcAI	AGTACT	3 cut(s)	171, 649, 658
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	2 cut(s)	524, 805
BmgT120I	GGNCC	2 cut(s)	524, 805
BmiI	GGNNCC	1 cut(s)	817
BmrFI	CCNGG	1 cut(s)	285
BmrI	ACTGGG	1 cut(s)	551
BmuI	ACTGGG	1 cut(s)	551
Bpu1102I	GCTNAGC	1 cut(s)	43
Bpu14I	TTCGAA	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	237, 303
Bse1I	ACTGG	4 cut(s)	506, 557, 579, 817
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	237, 303
BseGI	GGATG	1 cut(s)	19
BseJI	GATNNNNATC	1 cut(s)	144
BseMII	CTCAG	4 cut(s)	23, 150, 257, 377
BseNI	ACTGG	4 cut(s)	506, 557, 579, 817
BsiHKAI	GWGCWC	1 cut(s)	641
BsmAI	GTCTC	2 cut(s)	360, 477
Bso31I	GGTCTC	1 cut(s)	477
Bsp119I	TTCGAA	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	641
Bsp143I	GATC	9 cut(s)	36, 101, 208, 220, 406, 586, 624, 731, 782
Bsp1720I	GCTNAGC	1 cut(s)	43
Bsp19I	CCATGG	2 cut(s)	237, 303
BspACI	CCGC	1 cut(s)	60
BspCNI	CTCAG	4 cut(s)	22, 151, 256, 376
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	817
BspPI	GGATC	4 cut(s)	414, 619, 726, 790
BspT104I	TTCGAA	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	477
BsrI	ACTGG	4 cut(s)	506, 557, 579, 817
BssECI	CCNNGG	2 cut(s)	237, 303
BssMI	GATC	9 cut(s)	36, 101, 208, 220, 406, 586, 624, 731, 782
BssT1I	CCWWGG	2 cut(s)	237, 303
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	708
BstBI	TTCGAA	1 cut(s)	347
BstDEI	CTNAG	6 cut(s)	9, 43, 159, 243, 363, 602
BstDSI	CCRYGG	2 cut(s)	237, 303
BstF5I	GGATG	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	9 cut(s)	39, 104, 211, 223, 409, 589, 627, 734, 785
BstMAI	GTCTC	2 cut(s)	360, 477
BstMBI	GATC	9 cut(s)	36, 101, 208, 220, 406, 586, 624, 731, 782
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	2 cut(s)	258, 665
BstX2I	RGATCY	1 cut(s)	731
BstYI	RGATCY	1 cut(s)	731
BtgI	CCRYGG	2 cut(s)	237, 303
BtsCI	GGATG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	1 cut(s)	535
Cfr13I	GGNCC	2 cut(s)	524, 805
Csp6I	GTAC	5 cut(s)	170, 509, 576, 648, 657
CviAII	CATG	5 cut(s)	224, 238, 304, 380, 694
CviQI	GTAC	5 cut(s)	170, 509, 576, 648, 657
DdeI	CTNAG	6 cut(s)	9, 43, 159, 243, 363, 602
DpnI	GATC	9 cut(s)	38, 103, 210, 222, 408, 588, 626, 733, 784
DpnII	GATC	9 cut(s)	36, 101, 208, 220, 406, 586, 624, 731, 782
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Ecl136II	GAGCTC	1 cut(s)	639
Eco130I	CCWWGG	2 cut(s)	237, 303
Eco24I	GRGCYC	1 cut(s)	641
Eco31I	GGTCTC	1 cut(s)	477
Eco47I	GGWCC	2 cut(s)	524, 805
Eco53kI	GAGCTC	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	639
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	237, 303
EcoT38I	GRGCYC	1 cut(s)	641
ErhI	CCWWGG	2 cut(s)	237, 303
FaeI	CATG	5 cut(s)	227, 241, 307, 383, 697
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	5 cut(s)	223, 237, 303, 379, 693
FauNDI	CATATG	3 cut(s)	411, 529, 621
FbaI	TGATCA	2 cut(s)	36, 208
FblI	GTMKAC	1 cut(s)	24
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	641
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	534
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	5 cut(s)	227, 241, 307, 383, 697
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	145
HphI	GGTGA	2 cut(s)	85, 317
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	246, 340, 756
Hpy188III	TCNNGA	2 cut(s)	11, 224
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	4 cut(s)	282, 354, 522, 708
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	6 cut(s)	9, 43, 159, 243, 363, 602
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	5 cut(s)	227, 241, 307, 383, 697
HspAI	GCGC	1 cut(s)	533
Ksp22I	TGATCA	2 cut(s)	36, 208
Kzo9I	GATC	9 cut(s)	36, 101, 208, 220, 406, 586, 624, 731, 782
LmnI	GCTCC	1 cut(s)	765
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	9 cut(s)	38, 103, 210, 222, 408, 588, 626, 733, 784
MboI	GATC	9 cut(s)	36, 101, 208, 220, 406, 586, 624, 731, 782
MboII	GAAGA	3 cut(s)	267, 475, 695
MfeI	CAATTG	2 cut(s)	476, 629
MflI	RGATCY	1 cut(s)	731
MhlI	GDGCHC	1 cut(s)	641
MluCI	AATT	6 cut(s)	83, 108, 349, 476, 629, 670
MmeI	TCCRAC	1 cut(s)	764
MnlI	CCTC	1 cut(s)	129
MseI	TTAA	2 cut(s)	123, 750
MslI	CAYNNNNRTG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	285
MunI	CAATTG	2 cut(s)	476, 629
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	160
NcoI	CCATGG	2 cut(s)	237, 303
NdeI	CATATG	3 cut(s)	411, 529, 621
NdeII	GATC	9 cut(s)	36, 101, 208, 220, 406, 586, 624, 731, 782
NlaIII	CATG	5 cut(s)	227, 241, 307, 383, 697
NlaIV	GGNNCC	1 cut(s)	817
NspV	TTCGAA	1 cut(s)	347
PagI	TCATGA	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	641
Psp1406I	AACGTT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	817
PspPI	GGNCC	2 cut(s)	524, 805
PsuI	RGATCY	1 cut(s)	731
RsaI	GTAC	5 cut(s)	171, 510, 577, 649, 658
RsaNI	GTAC	5 cut(s)	170, 509, 576, 648, 657
RseI	CAYNNNNRTG	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	641
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	123, 750
Sau3AI	GATC	9 cut(s)	36, 101, 208, 220, 406, 586, 624, 731, 782
Sau96I	GGNCC	2 cut(s)	524, 805
ScaI	AGTACT	3 cut(s)	171, 649, 658
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	641
SfcI	CTRYAG	2 cut(s)	258, 665
SfuI	TTCGAA	1 cut(s)	347
SinI	GGWCC	2 cut(s)	524, 805
SmiMI	CAYNNNNRTG	1 cut(s)	228
SpeI	ACTAGT	1 cut(s)	653
Sse9I	AATT	6 cut(s)	83, 108, 349, 476, 629, 670
SsiI	CCGC	1 cut(s)	60
SspI	AATATT	1 cut(s)	710
SspMI	CTAG	1 cut(s)	654
SstI	GAGCTC	1 cut(s)	641
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	2 cut(s)	237, 303
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	24, 347
TasI	AATT	6 cut(s)	83, 108, 349, 476, 629, 670
TatI	WGTACW	3 cut(s)	169, 647, 656
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	123, 750
Tru9I	TTAA	2 cut(s)	123, 750
TspDTI	ATGAA	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	524, 805
XapI	RAATTY	3 cut(s)	108, 349, 670
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	1 cut(s)	654
ZrmI	AGTACT	3 cut(s)	171, 649, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.