Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007661

Physical Location & Seq

Genomic Coordinates Forward (+)

19529050 .. 19530137

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g17680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATAACAAATTCAAGGGACAAGGGTTTCCAAGCGAAGCAAGAGGGCCACAACAACAATGATGGGAACAACAATAGCAGTTTTAATAAGGCATCATCATCAAGTACTACTACTTCAAGGCAATGGTCTGTATTTAGAAATCCGAGGATCGTTCAAGTTTCACGTGCTTTCGGTGGGAAAGATAGGCACAGCAAGGTTTCCACAGTGAGGGGATTGAGGGACAGGAGAATTAGGCTTTCAGTACCAACGGCCATTCAATTGTATGATCTTCAAGATAGGCTTCGTCTTAGCCAACCTAGCAAGGTAATAGACTGGCTGCTTGGTGTTACGGAACAAGATATCGATAAGCTCCCTCCACTTCAAGTTCCTCATGGATTTGGTCATCAATTTCATCAGCCAATGCTATATCCTCATCAAGCGAGTAATTCTCTTATTGCTCCTTTCTTTGATGTAAATTCTACATTTATGGAGGCAGACCAAGTAGATGAACAAGTTCGTGATCAAGCGAAAGGCAAGTCGATCAAGACAAACGATGAACAAGATGATCGAAATCGTCATGACCACGAAGGAAATGTTAGTGGACAACTCCTAGCTCAAAAGCTATTTCCCATAGGCAATCATCCTTCTTCCATACCTGGCTTGCTAAACAATGCAATGGCATTCAACTACTATCACAACTATTTGGAGCCTTCAACGCTATCTCTAGCGCAGTTTGGCAGCCATGGATTTCCACAAGGTCCACAAACAGATCAGCATCGTAGTCATATGATGAGTACTAATGCCTTATCATTTTCAACTCCAATGGCATCTGGTTCTCAATTATGCTTCTGTCCACCTACAGCAACACCGACGCTATTCGGTTCATATCCTCCATATATGACCAATCCAATAGTGGAGGGTACTAGTACTGCTAATGATCAGCCTAGACAAGCCAGCCATTTCCAATTTTTGAGCTCATCAACAGCTCCATTTGGATTCACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

329

Amino Acids

36.56

Weight (kDa)

8.83

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08070 AT5G08070 AT5G60970
fragaria_vesca	FvH4_5g13710 FvH4_5g13710
malus_domestica	MD06G1226300.v1.1 MD14G1213400.v1.1
prunus_persica	Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1
pyrus_communis	pycom06g18050 pycom14g17680
rosa_chinensis	RchiOBHm_Chr7g0183231
rosa_laevigata	RLG00000005063
rosa_multiflora	Rmu_sc0008744.1_g000013
rosa_roxburghii	Rroxscaffold_3G00270630
rosa_rugosa	Rorug06G0455400 Rorug06G0455400 Rorug06G0455400
rosa_samantha	Rh7AG057400 Rh7BG057300 Rh7CG058900 Rh7DG057100
rosa_wichuraiana	Rw7G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	10, 454
AcvI	CACGTG	1 cut(s)	164
AfaI	GTAC	5 cut(s)	106, 243, 775, 901, 907
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	9 cut(s)	15, 117, 155, 257, 272, 362, 664, 693, 795
AhlI	ACTAGT	1 cut(s)	902
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	5 cut(s)	349, 593, 601, 954, 965
AluI	AGCT	5 cut(s)	349, 593, 601, 954, 965
Alw21I	GWGCWC	1 cut(s)	956
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	2 cut(s)	46, 249
ApeKI	GCWGC	2 cut(s)	316, 717
ApoI	RAATTY	2 cut(s)	10, 454
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	2 cut(s)	46, 737
AvaII	GGWCC	1 cut(s)	737
BanII	GRGCYC	1 cut(s)	956
BarI	GAAGNNNNNNTAC	2 cut(s)	97, 129
BbrPI	CACGTG	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	956
BbvI	GCAGC	2 cut(s)	303, 729
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	636
BclI	TGATCA	2 cut(s)	499, 916
BcuI	ACTAGT	1 cut(s)	902
BfaI	CTAG	5 cut(s)	297, 590, 704, 903, 924
BfmI	CTRYAG	1 cut(s)	837
BisI	GCNGC	2 cut(s)	317, 718
BlsI	GCNGC	2 cut(s)	318, 719
BmcAI	AGTACT	3 cut(s)	106, 775, 907
Bme1390I	CCNGG	1 cut(s)	636
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	2 cut(s)	46, 737
BmiI	GGNNCC	1 cut(s)	687
BmrFI	CCNGG	1 cut(s)	636
BmsI	GCATC	3 cut(s)	101, 763, 815
BplI	GAGNNNNNCTC	2 cut(s)	412, 444
Bsa29I	ATCGAT	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	164
BsaBI	GATNNNNATC	2 cut(s)	549, 753
BsaJI	CCNNGG	2 cut(s)	143, 721
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	2 cut(s)	128, 660
Bse8I	GATNNNNATC	2 cut(s)	549, 753
BseBI	CCWGG	1 cut(s)	636
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	143, 721
BseGI	GGATG	1 cut(s)	619
BseJI	GATNNNNATC	2 cut(s)	549, 753
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMI	GCAATG	2 cut(s)	128, 660
BseNI	ACTGG	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	303, 729
BshFI	GGCC	2 cut(s)	48, 251
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	956
BslFI	GGGAC	2 cut(s)	32, 233
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmFI	GGGAC	2 cut(s)	32, 233
BsmI	GAATGC	1 cut(s)	659
BsnI	GGCC	2 cut(s)	48, 251
Bsp1286I	GDGCHC	1 cut(s)	956
Bsp143I	GATC	7 cut(s)	147, 265, 499, 519, 544, 748, 916
Bsp19I	CCATGG	1 cut(s)	721
BspANI	GGCC	2 cut(s)	48, 251
BspDI	ATCGAT	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	1 cut(s)	687
BspPI	GGATC	1 cut(s)	155
BsrDI	GCAATG	2 cut(s)	128, 660
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	143, 721
BssMI	GATC	7 cut(s)	147, 265, 499, 519, 544, 748, 916
BssT1I	CCWWGG	1 cut(s)	721
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	1 cut(s)	205
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	641, 934
BstDEI	CTNAG	1 cut(s)	287
BstDSI	CCRYGG	1 cut(s)	721
BstF5I	GGATG	1 cut(s)	619
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	7 cut(s)	150, 268, 502, 522, 547, 751, 919
BstMBI	GATC	7 cut(s)	147, 265, 499, 519, 544, 748, 916
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 694
BstNI	CCWGG	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	634
BstSFI	CTRYAG	1 cut(s)	837
BstV1I	GCAGC	2 cut(s)	303, 729
Bsu15I	ATCGAT	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	48, 251
BsuTUI	ATCGAT	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	721
BtsCI	GGATG	1 cut(s)	619
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	2 cut(s)	641, 934
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	1 cut(s)	709
Cfr13I	GGNCC	2 cut(s)	46, 737
ClaI	ATCGAT	1 cut(s)	342
CseI	GACGC	1 cut(s)	859
Csp6I	GTAC	5 cut(s)	105, 242, 774, 900, 906
CviAII	CATG	3 cut(s)	371, 557, 722
CviQI	GTAC	5 cut(s)	105, 242, 774, 900, 906
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	7 cut(s)	149, 267, 501, 521, 546, 750, 918
DpnII	GATC	7 cut(s)	147, 265, 499, 519, 544, 748, 916
EaeI	YGGCCR	1 cut(s)	249
Ecl136II	GAGCTC	1 cut(s)	954
Eco130I	CCWWGG	1 cut(s)	721
Eco24I	GRGCYC	1 cut(s)	956
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	737
Eco53kI	GAGCTC	1 cut(s)	954
Eco72I	CACGTG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	954
EcoRII	CCWGG	1 cut(s)	634
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	721
EcoT38I	GRGCYC	1 cut(s)	956
ErhI	CCWWGG	1 cut(s)	721
FaeI	CATG	3 cut(s)	374, 560, 725
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	2 cut(s)	32, 233
FatI	CATG	3 cut(s)	370, 556, 721
FauNDI	CATATG	1 cut(s)	765
FbaI	TGATCA	2 cut(s)	499, 916
Fnu4HI	GCNGC	2 cut(s)	317, 718
FokI	GGATG	1 cut(s)	606
FriOI	GRGCYC	1 cut(s)	956
Fsp4HI	GCNGC	2 cut(s)	317, 718
FspBI	CTAG	5 cut(s)	297, 590, 704, 903, 924
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	2 cut(s)	317, 718
HaeIII	GGCC	2 cut(s)	48, 251
HgaI	GACGC	1 cut(s)	859
HhaI	GCGC	1 cut(s)	709
Hin1II	CATG	3 cut(s)	374, 560, 725
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HinfI	GANTC	1 cut(s)	975
Hpy166II	GTNNAC	3 cut(s)	581, 740, 833
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	4 cut(s)	272, 497, 523, 557
Hpy8I	GTNNAC	3 cut(s)	581, 740, 833
Hpy99I	CGWCG	1 cut(s)	853
HpyAV	CCTTC	3 cut(s)	560, 633, 699
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 694
HpyF3I	CTNAG	1 cut(s)	287
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	3 cut(s)	374, 560, 725
HspAI	GCGC	1 cut(s)	707
Ksp22I	TGATCA	2 cut(s)	499, 916
Kzo9I	GATC	7 cut(s)	147, 265, 499, 519, 544, 748, 916
LmnI	GCTCC	4 cut(s)	354, 442, 685, 970
LpnPI	CCDG	6 cut(s)	208, 298, 621, 648, 795, 946
Lsp1109I	GCAGC	2 cut(s)	303, 729
LweI	GCATC	3 cut(s)	101, 763, 815
MaeI	CTAG	5 cut(s)	297, 590, 704, 903, 924
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	7 cut(s)	149, 267, 501, 521, 546, 750, 918
MboI	GATC	7 cut(s)	147, 265, 499, 519, 544, 748, 916
MboII	GAAGA	2 cut(s)	260, 618
MfeI	CAATTG	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	956
MluCI	AATT	8 cut(s)	10, 228, 257, 386, 424, 454, 818, 944
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	636
MunI	CAATTG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	659
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	2 cut(s)	297, 694
NcoI	CCATGG	1 cut(s)	721
NdeI	CATATG	1 cut(s)	765
NdeII	GATC	7 cut(s)	147, 265, 499, 519, 544, 748, 916
NlaIII	CATG	3 cut(s)	374, 560, 725
NlaIV	GGNNCC	1 cut(s)	687
PagI	TCATGA	1 cut(s)	556
PctI	GAATGC	1 cut(s)	659
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	975
PkrI	GCNGC	2 cut(s)	318, 719
PmaCI	CACGTG	1 cut(s)	164
PmlI	CACGTG	1 cut(s)	164
Ppu21I	YACGTR	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	956
Psp6I	CCWGG	1 cut(s)	634
PspCI	CACGTG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	1 cut(s)	687
PspPI	GGNCC	2 cut(s)	46, 737
RsaI	GTAC	5 cut(s)	106, 243, 775, 901, 907
RsaNI	GTAC	5 cut(s)	105, 242, 774, 900, 906
SacI	GAGCTC	1 cut(s)	956
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	317, 718
Sau3AI	GATC	7 cut(s)	147, 265, 499, 519, 544, 748, 916
Sau96I	GGNCC	2 cut(s)	46, 737
ScaI	AGTACT	3 cut(s)	106, 775, 907
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	1 cut(s)	956
SfaNI	GCATC	3 cut(s)	101, 763, 815
SfcI	CTRYAG	1 cut(s)	837
SinI	GGWCC	1 cut(s)	737
SpeI	ACTAGT	1 cut(s)	902
Sse9I	AATT	8 cut(s)	10, 228, 257, 386, 424, 454, 818, 944
SspMI	CTAG	5 cut(s)	297, 590, 704, 903, 924
SstI	GAGCTC	1 cut(s)	956
StyD4I	CCNGG	1 cut(s)	634
StyI	CCWWGG	1 cut(s)	721
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	3 cut(s)	342, 518, 547
TasI	AATT	8 cut(s)	10, 228, 257, 386, 424, 454, 818, 944
TatI	WGTACW	3 cut(s)	104, 773, 905
TfiI	GAWTC	1 cut(s)	975
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	210
TseI	GCWGC	2 cut(s)	316, 717
TspDTI	ATGAA	4 cut(s)	380, 501, 549, 852
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	737
XapI	RAATTY	2 cut(s)	10, 454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	889
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	5 cut(s)	297, 590, 704, 903, 924
ZrmI	AGTACT	3 cut(s)	106, 775, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.