FvH4_5g13710
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007661
Physical Location & Seq
Reverse (-)
7753336 .. 7755573
2238 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13710.t2

Sequence Viewer

Length: 1131 bp
ATGATGACTGATCCAAGGGGAAAGGGATTTCAAGCAAAGCAAGAGGGCCAAAACAACAACAACAATGATGGAAACACAATGAGTAGTTATAACAAGGCAGCTTCATCTAGTACTACTACTTCAAGGCAATGGTCTGGATTTCGAAATCCAAGGATTGTTCGTGTCTCCCGAACCTTTGGGGGAAAAGACAGGCACAGCAAGGTGTCAACCGTGAGGGGATTGAGAGACAGAAGAATTAGGCTTTCAGTGCCAACAGCAATTCAATTATATGACCTTCAAGACAGGCTTGGTCTTAGCCAACCTAGCAAGGTAATAGATTGGTTGCTTGAAGTTACTGACGATGATATTGAAAAGCTCCCACCACTCCAACTACTTCCTCATCACGGTTTGCTCAATACTACTAGTACTGCTCATCATCAATTTCATCATCAACAACAGCAAATTCTAAATCCTGTTAATGTTCCTTTCTTTGATGTGAATCGAAGACTTACTGAGCAAGTTGTGCTTGATGAGAGTAAAGGAAAGTCAATCAAAGATCATGATGATCAAGCCTTGGCTCAGAAGTTATTTCCTATAGGCAATATGCCTTCTTCAATACCTGGATTGCTGAACAATGCCATGGCATACAACAACTACTTTCAAAATCACAATTCGGAGCCTTCATGTTTGTCTCTTTCTCAGTTTGGTAGCAGTAGTCATGGATTTCCACTGGCACCTCAAATGGATCATATGATGAGTAGTAACAATGGCTTATCATTTTCAAATACTTCAATGCCAATGGCATCTGGCTCGCAATTGTTCTTCTGTCCATCAACAGCTACGCCGGTACCTTCACTGTTTGGTCCATATGCTCCCTACATTACCGCTACTACCCCAGTAGGAGAGAACAGTAGTACCAGTAATGATCAGCAGCCTGCACTTAGACAAACCAGTAACCATATGATCCAATTGTTGAGCTCAGGAAATACTACTTCACAGAATTTTGCACCTAATAATGTTCTCATGCCTTCTCTTCAATATTCGATTGGCTCATCTTTGAGATCATTTCCAACATTGGATAATCTGAAGCTCCATTCGCAAAACCATAATGCATCATCAAGCCAACCAAACAAGGACGATACTGGTTCCTAA

Protein Analysis

377

Amino Acids

41.44

Weight (kDa)

8.82

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 61 - 138 7.5e-25 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
Acc65I GGTACC 1 cut(s) 826
AccB1I GGYRCC 2 cut(s) 712, 826
AciI CCGC 1 cut(s) 864
AclWI GGATC 3 cut(s) 5, 732, 937
AcsI RAATTY 2 cut(s) 441, 979
AcuI CTGAAG 1 cut(s) 1085
AfaI GTAC 4 cut(s) 112, 406, 828, 895
AfiI CCNNNNNNNGG 1 cut(s) 383
AhlI ACTAGT 1 cut(s) 401
AjnI CCWGG 1 cut(s) 598
AluBI AGCT 5 cut(s) 101, 355, 818, 957, 1069
AluI AGCT 5 cut(s) 101, 355, 818, 957, 1069
Alw21I GWGCWC 1 cut(s) 959
Alw26I GTCTC 3 cut(s) 169, 219, 675
AlwI GGATC 3 cut(s) 5, 732, 937
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 98, 910
ApoI RAATTY 2 cut(s) 441, 979
Asp718I GGTACC 1 cut(s) 826
AspS9I GGNCC 2 cut(s) 46, 842
AsuII TTCGAA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 842
BaeI ACNNNNGTAYC 4 cut(s) 810, 843, 877, 910
BanI GGYRCC 2 cut(s) 712, 826
BanII GRGCYC 1 cut(s) 959
BarI GAAGNNNNNNTAC 2 cut(s) 103, 135
BbsI GAAGAC 1 cut(s) 490
Bbv12I GWGCWC 1 cut(s) 959
BbvI GCAGC 2 cut(s) 110, 922
BccI CCATC 2 cut(s) 62, 817
BcgI CGANNNNNNTGC 2 cut(s) 771, 805
BciT130I CCWGG 1 cut(s) 600
BclI TGATCA 2 cut(s) 544, 904
BcoDI GTCTC 3 cut(s) 169, 219, 675
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 3 cut(s) 108, 303, 402
BfmI CTRYAG 1 cut(s) 573
BisI GCNGC 2 cut(s) 99, 911
BlsI GCNGC 2 cut(s) 100, 912
BmcAI AGTACT 2 cut(s) 112, 406
Bme1390I CCNGG 1 cut(s) 600
Bme18I GGWCC 1 cut(s) 842
BmgT120I GGNCC 2 cut(s) 46, 842
BmiI GGNNCC 4 cut(s) 657, 714, 828, 1126
BmrFI CCNGG 1 cut(s) 600
BmrI ACTGGG 1 cut(s) 869
BmsI GCATC 2 cut(s) 791, 1100
BmuI ACTGGG 1 cut(s) 869
BpiI GAAGAC 1 cut(s) 490
Bpu10I CCTNAGC 1 cut(s) 958
Bpu14I TTCGAA 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 477
BsaJI CCNNGG 4 cut(s) 14, 149, 552, 618
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse118I RCCGGY 1 cut(s) 823
Bse1I ACTGG 5 cut(s) 714, 875, 897, 930, 1126
Bse3DI GCAATG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 1 cut(s) 600
BseDI CCNNGG 4 cut(s) 14, 149, 552, 618
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 4 cut(s) 483, 572, 692, 972
BseNI ACTGG 5 cut(s) 714, 875, 897, 930, 1126
BseXI GCAGC 2 cut(s) 110, 922
BsgI GTGCAG 1 cut(s) 900
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 2 cut(s) 712, 826
BsiHKAI GWGCWC 1 cut(s) 959
BsiSI CCGG 1 cut(s) 824
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 3 cut(s) 169, 219, 675
BsnI GGCC 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 959
Bsp143I GATC 7 cut(s) 10, 535, 544, 724, 904, 942, 1040
Bsp19I CCATGG 1 cut(s) 618
BspACI CCGC 1 cut(s) 864
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 4 cut(s) 484, 571, 691, 971
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 4 cut(s) 657, 714, 828, 1126
BspPI GGATC 3 cut(s) 5, 732, 937
BspT104I TTCGAA 1 cut(s) 142
BspT107I GGYRCC 2 cut(s) 712, 826
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 823
BsrI ACTGG 5 cut(s) 714, 875, 897, 930, 1126
BssAI RCCGGY 1 cut(s) 823
BssECI CCNNGG 4 cut(s) 14, 149, 552, 618
BssMI GATC 7 cut(s) 10, 535, 544, 724, 904, 942, 1040
BssT1I CCWWGG 4 cut(s) 14, 149, 552, 618
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 4 cut(s) 211, 386, 837, 890
Bst6I CTCTTC 1 cut(s) 1017
BstAPI GCANNNNNTGC 1 cut(s) 502
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 791, 915
BstDEI CTNAG 6 cut(s) 293, 492, 558, 678, 920, 958
BstDSI CCRYGG 1 cut(s) 618
BstKTI GATC 7 cut(s) 13, 538, 547, 727, 907, 945, 1043
BstMAI GTCTC 3 cut(s) 169, 219, 675
BstMBI GATC 7 cut(s) 10, 535, 544, 724, 904, 942, 1040
BstMWI GCNNNNNNNGC 4 cut(s) 247, 303, 502, 1075
BstNI CCWGG 1 cut(s) 600
BstSCI CCNGG 1 cut(s) 598
BstSFI CTRYAG 1 cut(s) 573
BstV1I GCAGC 2 cut(s) 110, 922
BstV2I GAAGAC 1 cut(s) 490
BsuRI GGCC 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 618
BtsIMutI CAGTG 3 cut(s) 252, 707, 833
Cac8I GCNNGC 2 cut(s) 791, 915
CciI TCATGA 1 cut(s) 538
Cfr10I RCCGGY 1 cut(s) 823
Cfr13I GGNCC 2 cut(s) 46, 842
Csp6I GTAC 4 cut(s) 111, 405, 827, 894
CviAII CATG 5 cut(s) 539, 619, 663, 698, 1003
CviQI GTAC 4 cut(s) 111, 405, 827, 894
DdeI CTNAG 6 cut(s) 293, 492, 558, 678, 920, 958
DpnI GATC 7 cut(s) 12, 537, 546, 726, 906, 944, 1042
DpnII GATC 7 cut(s) 10, 535, 544, 724, 904, 942, 1040
Eam1104I CTCTTC 1 cut(s) 1017
EarI CTCTTC 1 cut(s) 1017
Ecl136II GAGCTC 1 cut(s) 957
Eco130I CCWWGG 4 cut(s) 14, 149, 552, 618
Eco24I GRGCYC 1 cut(s) 959
Eco47I GGWCC 1 cut(s) 842
Eco53kI GAGCTC 1 cut(s) 957
Eco57I CTGAAG 1 cut(s) 1085
EcoICRI GAGCTC 1 cut(s) 957
EcoRII CCWGG 1 cut(s) 598
EcoT14I CCWWGG 4 cut(s) 14, 149, 552, 618
EcoT22I ATGCAT 1 cut(s) 1093
EcoT38I GRGCYC 1 cut(s) 959
ErhI CCWWGG 4 cut(s) 14, 149, 552, 618
FaeI CATG 5 cut(s) 542, 622, 666, 701, 1006
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 489, 521
FatI CATG 5 cut(s) 538, 618, 662, 697, 1002
FauNDI CATATG 3 cut(s) 729, 847, 939
FbaI TGATCA 2 cut(s) 544, 904
Fnu4HI GCNGC 2 cut(s) 99, 911
FriOI GRGCYC 1 cut(s) 959
Fsp4HI GCNGC 2 cut(s) 99, 911
FspBI CTAG 3 cut(s) 108, 303, 402
GluI GCNGC 2 cut(s) 99, 911
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 824
Hin1II CATG 5 cut(s) 542, 622, 666, 701, 1006
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 1 cut(s) 478
HpaII CCGG 1 cut(s) 824
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 3 cut(s) 561, 655, 1065
Hpy188III TCNNGA 5 cut(s) 135, 168, 278, 539, 960
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 5 cut(s) 284, 597, 669, 840, 1017
HpyCH4III ACNGT 4 cut(s) 211, 386, 837, 890
HpyCH4V TGCA 3 cut(s) 917, 986, 1091
HpyF10VI GCNNNNNNNGC 4 cut(s) 247, 303, 502, 1075
HpyF3I CTNAG 6 cut(s) 293, 492, 558, 678, 920, 958
Hsp92II CATG 5 cut(s) 542, 622, 666, 701, 1006
KpnI GGTACC 1 cut(s) 830
Ksp22I TGATCA 2 cut(s) 544, 904
Kzo9I GATC 7 cut(s) 10, 535, 544, 724, 904, 942, 1040
LmnI GCTCC 4 cut(s) 360, 655, 856, 1074
Lsp1109I GCAGC 2 cut(s) 110, 922
LweI GCATC 2 cut(s) 791, 1100
MaeI CTAG 3 cut(s) 108, 303, 402
MaeIII GTNAC 3 cut(s) 331, 740, 932
MalI GATC 7 cut(s) 12, 537, 546, 726, 906, 944, 1042
MboI GATC 7 cut(s) 10, 535, 544, 724, 904, 942, 1040
MboII GAAGA 5 cut(s) 243, 495, 582, 793, 1004
MfeI CAATTG 2 cut(s) 794, 947
MhlI GDGCHC 1 cut(s) 959
MluCI AATT 9 cut(s) 234, 258, 263, 419, 441, 649, 794, 947, 979
MmeI TCCRAC 2 cut(s) 391, 1073
MnlI CCTC 4 cut(s) 37, 207, 387, 726
Mph1103I ATGCAT 1 cut(s) 1093
MseI TTAA 1 cut(s) 456
MspI CCGG 1 cut(s) 824
MspR9I CCNGG 1 cut(s) 600
MunI CAATTG 2 cut(s) 794, 947
MvaI CCWGG 1 cut(s) 600
MwoI GCNNNNNNNGC 4 cut(s) 247, 303, 502, 1075
NcoI CCATGG 1 cut(s) 618
NdeI CATATG 3 cut(s) 729, 847, 939
NdeII GATC 7 cut(s) 10, 535, 544, 724, 904, 942, 1040
NlaIII CATG 5 cut(s) 542, 622, 666, 701, 1006
NlaIV GGNNCC 4 cut(s) 657, 714, 828, 1126
NsiI ATGCAT 1 cut(s) 1093
NspV TTCGAA 1 cut(s) 142
PagI TCATGA 1 cut(s) 538
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PfeI GAWTC 1 cut(s) 478
PkrI GCNGC 2 cut(s) 100, 912
PsiI TTATAA 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 959
Psp6I CCWGG 1 cut(s) 598
PspGI CCWGG 1 cut(s) 598
PspN4I GGNNCC 4 cut(s) 657, 714, 828, 1126
PspPI GGNCC 2 cut(s) 46, 842
RsaI GTAC 4 cut(s) 112, 406, 828, 895
RsaNI GTAC 4 cut(s) 111, 405, 827, 894
SacI GAGCTC 1 cut(s) 959
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 2 cut(s) 99, 911
Sau3AI GATC 7 cut(s) 10, 535, 544, 724, 904, 942, 1040
Sau96I GGNCC 2 cut(s) 46, 842
ScaI AGTACT 2 cut(s) 112, 406
ScrFI CCNGG 1 cut(s) 600
SduI GDGCHC 1 cut(s) 959
SfaNI GCATC 2 cut(s) 791, 1100
SfcI CTRYAG 1 cut(s) 573
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 1 cut(s) 842
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 9 cut(s) 234, 258, 263, 419, 441, 649, 794, 947, 979
SsiI CCGC 1 cut(s) 864
SspI AATATT 1 cut(s) 1019
SspMI CTAG 3 cut(s) 108, 303, 402
SstI GAGCTC 1 cut(s) 959
StyD4I CCNGG 1 cut(s) 598
StyI CCWWGG 4 cut(s) 14, 149, 552, 618
TaaI ACNGT 4 cut(s) 211, 386, 837, 890
TaqI TCGA 3 cut(s) 142, 481, 1022
TasI AATT 9 cut(s) 234, 258, 263, 419, 441, 649, 794, 947, 979
TatI WGTACW 2 cut(s) 110, 404
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 3 cut(s) 252, 714, 840
TseI GCWGC 2 cut(s) 98, 910
TspDTI ATGAA 3 cut(s) 93, 413, 651
TspRI CASTG 3 cut(s) 252, 714, 840
VpaK11BI GGWCC 1 cut(s) 842
XapI RAATTY 2 cut(s) 441, 979
XspI CTAG 3 cut(s) 108, 303, 402
ZrmI AGTACT 2 cut(s) 112, 406
Zsp2I ATGCAT 1 cut(s) 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.