Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007661

Physical Location & Seq

Genomic Coordinates Forward (+)

29782365 .. 29784375

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1213400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGATAACAAATTCAAGGGACAAGGGTTTCCAAGCGAAGCAAGAGGGCCACAACAACAATGATGGGAACAACAATAGCAGTTTTAATAAGGCATCATCATCAAGTACTACTACTTCAAGGCAATGGTCTGGATTTAGTAATCCGAGGATCGTGCGAGTTTCACGTGCTTTCGGTGGGAAAGATAGGCACAGCAAGGTTTCCACAGTGAGGGGATTGAGGGACAGGAGAATTAGGCTTTCAGTACCAACGGCCATTCAATTGTATGATCTTCAAGATAGGCTTCGTCTTAGCCAACCTAGCAAGGTAATAGACTGGCTGCTTGGTGTTACGGAACAAGATATCGATAAGCTCCCTCCACTTCAAGTTCCTCATGGATTTGGTCATCATCAGCCAATGCTAAATCCTCATCAAGCTAATAATTCTCTTATTGCTCCTTTCTTTGATGTAAATTCTACATTTATGGAGGCAGACCAAGTTGATGAAGAAGTTCGTGATCAAGCGAAAGGCAAGTCGATCAAGACAAACGATGAACAAGATGATCAAAATCGTCACGACCACGAAGGAAACGTTAGTGGACAACACCTAGCTCAAAAGCTATTTCCCATAGGTAATCATCCTTCTTCCATACCTGGCTTGCTAAACAATGCAATGGCATTCAACTACTATCACAACTATTCGGAGCCTTCAACGCTATCTCTAGCGCAGTTTGGCAGCCATGGATTTCCACAAGTACCACAAACAGATCAGCATCGTAGTCATATGATGAGTACTAATGCCTTATCATTTTCAACTCCAATGGCATCTGGTTCTCAATTATTCTTCTGTCCACCTACAGCAACACCGACGCTATTCGGTTCATATCCTCCATATATGACCAATCCAATAGTGGAGGGTACTAGTACTGCTACTGATCAGCCTAGACAAGCCAGCCATTTCCAATTTTTGAGCTCGTCAAGTAATTCACAAAATTTCCTAGCTAACAATGCTCTCATGCCTTATCTTCATTCAATTAGCTCATCCTTGAAATGCTTTCCATCATTGGTTGATCCCAAGCAGCAGCTCCATTTGGATTCACAAAATAACAATGCAAGCCAACCAAACAAGGACGTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

372

Amino Acids

41.21

Weight (kDa)

7.32

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	59 - 181	1e-24	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08070 AT5G08070 AT5G60970
fragaria_vesca	FvH4_5g13710 FvH4_5g13710
malus_domestica	MD06G1226300.v1.1 MD14G1213400.v1.1
prunus_persica	Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1
pyrus_communis	pycom06g18050 pycom14g17680
rosa_chinensis	RchiOBHm_Chr7g0183231
rosa_laevigata	RLG00000005063
rosa_multiflora	Rmu_sc0008744.1_g000013
rosa_roxburghii	Rroxscaffold_3G00270630
rosa_rugosa	Rorug06G0455400 Rorug06G0455400 Rorug06G0455400
rosa_samantha	Rh7AG057400 Rh7BG057300 Rh7CG058900 Rh7DG057100
rosa_wichuraiana	Rw7G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	567
AclWI	GGATC	2 cut(s)	155, 1040
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	3 cut(s)	10, 448, 967
AcvI	CACGTG	1 cut(s)	164
AfaI	GTAC	6 cut(s)	106, 243, 732, 769, 895, 901
AfiI	CCNNNNNNNGG	1 cut(s)	207
AhlI	ACTAGT	1 cut(s)	896
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	8 cut(s)	349, 413, 587, 595, 948, 977, 1014, 1060
AluI	AGCT	8 cut(s)	349, 413, 587, 595, 948, 977, 1014, 1060
Alw21I	GWGCWC	1 cut(s)	950
AlwI	GGATC	2 cut(s)	155, 1040
AoxI	GGCC	2 cut(s)	46, 249
ApeKI	GCWGC	4 cut(s)	316, 711, 1054, 1057
ApoI	RAATTY	3 cut(s)	10, 448, 967
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	703
AspS9I	GGNCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	950
BarI	GAAGNNNNNNTAC	4 cut(s)	97, 129, 601, 633
BbrPI	CACGTG	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	950
BbvI	GCAGC	4 cut(s)	303, 723, 1066, 1069
BccI	CCATC	2 cut(s)	56, 1042
BceAI	ACGGC	1 cut(s)	264
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	1 cut(s)	630
BclI	TGATCA	3 cut(s)	493, 538, 910
BcuI	ACTAGT	1 cut(s)	896
BfaI	CTAG	6 cut(s)	297, 584, 698, 897, 918, 974
BfmI	CTRYAG	1 cut(s)	831
BisI	GCNGC	4 cut(s)	317, 712, 1055, 1058
BlsI	GCNGC	4 cut(s)	318, 713, 1056, 1059
BmcAI	AGTACT	3 cut(s)	106, 769, 901
Bme1390I	CCNGG	1 cut(s)	630
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	681
BmrFI	CCNGG	1 cut(s)	630
BmsI	GCATC	3 cut(s)	101, 757, 809
Bsa29I	ATCGAT	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	164
BsaBI	GATNNNNATC	2 cut(s)	543, 747
BsaJI	CCNNGG	2 cut(s)	143, 715
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	2 cut(s)	128, 654
Bse8I	GATNNNNATC	2 cut(s)	543, 747
BseBI	CCWGG	1 cut(s)	630
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	143, 715
BseGI	GGATG	2 cut(s)	613, 1016
BseJI	GATNNNNATC	2 cut(s)	543, 747
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMI	GCAATG	2 cut(s)	128, 654
BseNI	ACTGG	1 cut(s)	317
BseXI	GCAGC	4 cut(s)	303, 723, 1066, 1069
BshFI	GGCC	2 cut(s)	48, 251
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	950
BslFI	GGGAC	2 cut(s)	32, 233
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmFI	GGGAC	2 cut(s)	32, 233
BsmI	GAATGC	1 cut(s)	653
BsnI	GGCC	2 cut(s)	48, 251
Bsp1286I	GDGCHC	1 cut(s)	950
Bsp143I	GATC	8 cut(s)	147, 265, 493, 513, 538, 742, 910, 1045
Bsp19I	CCATGG	1 cut(s)	715
BspANI	GGCC	2 cut(s)	48, 251
BspDI	ATCGAT	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	681
BspPI	GGATC	2 cut(s)	155, 1040
BsrDI	GCAATG	2 cut(s)	128, 654
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	143, 715
BssMI	GATC	8 cut(s)	147, 265, 493, 513, 538, 742, 910, 1045
BssT1I	CCWWGG	1 cut(s)	715
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	1 cut(s)	205
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	635, 928, 1090
BstDEI	CTNAG	1 cut(s)	287
BstDSI	CCRYGG	1 cut(s)	715
BstF5I	GGATG	2 cut(s)	613, 1016
BstHHI	GCGC	1 cut(s)	703
BstKTI	GATC	8 cut(s)	150, 268, 496, 516, 541, 745, 913, 1048
BstMBI	GATC	8 cut(s)	147, 265, 493, 513, 538, 742, 910, 1045
BstMWI	GCNNNNNNNGC	3 cut(s)	297, 688, 983
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	1 cut(s)	628
BstSFI	CTRYAG	1 cut(s)	831
BstV1I	GCAGC	4 cut(s)	303, 723, 1066, 1069
Bsu15I	ATCGAT	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	48, 251
BsuTUI	ATCGAT	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	715
BtsCI	GGATG	2 cut(s)	613, 1016
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	635, 928, 1090
CfoI	GCGC	1 cut(s)	703
Cfr13I	GGNCC	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	342
CseI	GACGC	1 cut(s)	853
Csp6I	GTAC	6 cut(s)	105, 242, 731, 768, 894, 900
CviAII	CATG	3 cut(s)	371, 716, 991
CviQI	GTAC	6 cut(s)	105, 242, 731, 768, 894, 900
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	8 cut(s)	149, 267, 495, 515, 540, 744, 912, 1047
DpnII	GATC	8 cut(s)	147, 265, 493, 513, 538, 742, 910, 1045
EaeI	YGGCCR	1 cut(s)	249
Ecl136II	GAGCTC	1 cut(s)	948
Eco130I	CCWWGG	1 cut(s)	715
Eco24I	GRGCYC	1 cut(s)	950
Eco32I	GATATC	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	948
Eco72I	CACGTG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	948
EcoRII	CCWGG	1 cut(s)	628
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	715
EcoT38I	GRGCYC	1 cut(s)	950
ErhI	CCWWGG	1 cut(s)	715
FaeI	CATG	3 cut(s)	374, 719, 994
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	2 cut(s)	32, 233
FatI	CATG	3 cut(s)	370, 715, 990
FauNDI	CATATG	1 cut(s)	759
FbaI	TGATCA	3 cut(s)	493, 538, 910
Fnu4HI	GCNGC	4 cut(s)	317, 712, 1055, 1058
FokI	GGATG	2 cut(s)	600, 1003
FriOI	GRGCYC	1 cut(s)	950
Fsp4HI	GCNGC	4 cut(s)	317, 712, 1055, 1058
FspBI	CTAG	6 cut(s)	297, 584, 698, 897, 918, 974
GlaI	GCGC	1 cut(s)	702
GluI	GCNGC	4 cut(s)	317, 712, 1055, 1058
HaeIII	GGCC	2 cut(s)	48, 251
HgaI	GACGC	1 cut(s)	853
HhaI	GCGC	1 cut(s)	703
Hin1II	CATG	3 cut(s)	374, 719, 994
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HinfI	GANTC	1 cut(s)	1070
Hpy166II	GTNNAC	2 cut(s)	575, 827
Hpy188I	TCNGA	2 cut(s)	144, 679
Hpy188III	TCNNGA	5 cut(s)	129, 272, 491, 517, 551
Hpy8I	GTNNAC	2 cut(s)	575, 827
Hpy99I	CGWCG	1 cut(s)	847
HpyAV	CCTTC	3 cut(s)	554, 627, 693
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	3 cut(s)	163, 567, 1107
HpyCH4V	TGCA	2 cut(s)	647, 1088
HpyF10VI	GCNNNNNNNGC	3 cut(s)	297, 688, 983
HpyF3I	CTNAG	1 cut(s)	287
HpySE526I	ACGT	3 cut(s)	163, 567, 1107
Hsp92II	CATG	3 cut(s)	374, 719, 994
HspAI	GCGC	1 cut(s)	701
Ksp22I	TGATCA	3 cut(s)	493, 538, 910
Kzo9I	GATC	8 cut(s)	147, 265, 493, 513, 538, 742, 910, 1045
LmnI	GCTCC	4 cut(s)	354, 436, 679, 1065
LpnPI	CCDG	7 cut(s)	114, 208, 298, 615, 642, 789, 940
Lsp1109I	GCAGC	4 cut(s)	303, 723, 1066, 1069
LweI	GCATC	3 cut(s)	101, 757, 809
MaeI	CTAG	6 cut(s)	297, 584, 698, 897, 918, 974
MaeII	ACGT	3 cut(s)	163, 567, 1107
MaeIII	GTNAC	2 cut(s)	325, 548
MalI	GATC	8 cut(s)	149, 267, 495, 515, 540, 744, 912, 1047
MboI	GATC	8 cut(s)	147, 265, 493, 513, 538, 742, 910, 1045
MboII	GAAGA	5 cut(s)	260, 494, 612, 811, 992
MfeI	CAATTG	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	950
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	630
MunI	CAATTG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	653
MvaI	CCWGG	1 cut(s)	630
MwoI	GCNNNNNNNGC	3 cut(s)	297, 688, 983
NcoI	CCATGG	1 cut(s)	715
NdeI	CATATG	1 cut(s)	759
NdeII	GATC	8 cut(s)	147, 265, 493, 513, 538, 742, 910, 1045
NlaIII	CATG	3 cut(s)	374, 719, 994
NlaIV	GGNNCC	1 cut(s)	681
NmuCI	GTSAC	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	564
PctI	GAATGC	1 cut(s)	653
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	1070
PkrI	GCNGC	4 cut(s)	318, 713, 1056, 1059
PmaCI	CACGTG	1 cut(s)	164
PmlI	CACGTG	1 cut(s)	164
Ppu21I	YACGTR	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	950
Psp1406I	AACGTT	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	628
PspCI	CACGTG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	1 cut(s)	681
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	6 cut(s)	106, 243, 732, 769, 895, 901
RsaNI	GTAC	6 cut(s)	105, 242, 731, 768, 894, 900
SacI	GAGCTC	1 cut(s)	950
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	4 cut(s)	317, 712, 1055, 1058
Sau3AI	GATC	8 cut(s)	147, 265, 493, 513, 538, 742, 910, 1045
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	3 cut(s)	106, 769, 901
ScrFI	CCNGG	1 cut(s)	630
SduI	GDGCHC	1 cut(s)	950
SfaNI	GCATC	3 cut(s)	101, 757, 809
SfcI	CTRYAG	1 cut(s)	831
SpeI	ACTAGT	1 cut(s)	896
SspMI	CTAG	6 cut(s)	297, 584, 698, 897, 918, 974
SstI	GAGCTC	1 cut(s)	950
StyD4I	CCNGG	1 cut(s)	628
StyI	CCWWGG	1 cut(s)	715
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	3 cut(s)	166, 570, 1110
TaqI	TCGA	2 cut(s)	342, 512
TatI	WGTACW	3 cut(s)	104, 767, 899
TfiI	GAWTC	1 cut(s)	1070
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	4 cut(s)	316, 711, 1054, 1057
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	4 cut(s)	495, 543, 846, 992
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	210
XapI	RAATTY	3 cut(s)	10, 448, 967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	6 cut(s)	297, 584, 698, 897, 918, 974
ZrmI	AGTACT	3 cut(s)	106, 769, 901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.