Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007661

Physical Location & Seq

Genomic Coordinates Forward (+)

16475878 .. 16478821

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G206400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGATATCAAATTCAAGGGAAAAGGGCTTCCAAGCAAAGCAAGAGGGCCACAACAACACCAATAATGATGGAAACAGTAGTAATTTCAACAAGGCATCATCATCAAGTACTACTACTTCAAGACAATGGTCTGGATTTAGAAATCCAAGGATTGTACGTGTCTCGCGCACCTTCGGAGGAAAAGATAGGCACAGCAAGGTTTCCACGGTGAGGGGATTGAGGGACAGGAGAATTAGGCTCTCAGTACCAACAGCCATTCAATTATATGACCTTCAAGACAGGCTTGGACTTAGCCAACCTAGTAAGGTAATAGACTGGCTGCTTGATGTTACTGAAGATGATATTGATAAGCTCCCACCTCTCCAAGTTCCTCATGGATTTGCTCATCAATTTCATCAGCAAATGCTAAATCCTCATCATTCTCATGATCAAGGTCACCAGTCTAACAATTCTCTTGCTGCTGCTCCTTTCTTTGATGTAAATTCTTCATTTATGGAGGCAGATCATCAAGCTCATCAAAGAAGTTCTACTACTACTAATGTGGGTGATCGGAAAGGCAAGTCAATCAAAACACATGATGAACAAGATGATGATGATCAAAATCATCATCAAGATGGAAATATTGGGGGTGGACAACTCTTGGCTCAGAAGCTATTTCCCCAAGGCAATCATCCTTCCTCAATACCTGGCCTGCTAAACAATGCCATGGCATACAATTACTATCATAATTATTCAGAGCCTTCAAGTTTATCTCTATCTCAATTTGGTGGCCATGGATTTCCACCAGTGCCCCAAATAGATCATCATAGCCATATGATGAGCAATGCCTTATCATTTTCAACTTCAATGCCATCTGGATCTCAATTGTTCTTCTGTCCATCAACAGCAACACCCTCCCTTTTCGGTCCATATCCTCCGTATATTACCAACCCGGTAGTGGAGAGAGGTACTACTACTAGTGAGCCAAGATCACAAGCCAACCATTTCCAATTTTTGAGCTCATCAAATTCACCAAATCTCCTACCAAATGCTCTCATGTCTTCTCTTCAGTCTTTGAAATCCTATCCAACATCGGTCAATCCCAAGCAGCTCCATTCGAATTCACAGGATAACAATGGAAGCCAACCAAACAAGGACCATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

382

Amino Acids

42.18

Weight (kDa)

7.43

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08070 AT5G08070 AT5G60970
fragaria_vesca	FvH4_5g13710 FvH4_5g13710
malus_domestica	MD06G1226300.v1.1 MD14G1213400.v1.1
prunus_persica	Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1
pyrus_communis	pycom06g18050 pycom14g17680
rosa_chinensis	RchiOBHm_Chr7g0183231
rosa_laevigata	RLG00000005063
rosa_multiflora	Rmu_sc0008744.1_g000013
rosa_roxburghii	Rroxscaffold_3G00270630
rosa_rugosa	Rorug06G0455400 Rorug06G0455400 Rorug06G0455400
rosa_samantha	Rh7AG057400 Rh7BG057300 Rh7CG058900 Rh7DG057100
rosa_wichuraiana	Rw7G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	166
AclWI	GGATC	1 cut(s)	865
AcoI	YGGCCR	1 cut(s)	769
AcsI	RAATTY	4 cut(s)	10, 481, 1006, 1099
AcuI	CTGAAG	2 cut(s)	354, 1031
AfaI	GTAC	4 cut(s)	109, 156, 246, 949
AfiI	CCNNNNNNNGG	2 cut(s)	210, 937
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	9 cut(s)	15, 88, 120, 260, 275, 744, 840, 846, 1057
AhlI	ACTAGT	1 cut(s)	956
AjnI	CCWGG	1 cut(s)	685
AluBI	AGCT	5 cut(s)	352, 512, 652, 999, 1090
AluI	AGCT	5 cut(s)	352, 512, 652, 999, 1090
Alw21I	GWGCWC	1 cut(s)	1001
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	865
AoxI	GGCC	3 cut(s)	46, 688, 769
ApeKI	GCWGC	4 cut(s)	319, 458, 461, 1087
ApoI	RAATTY	4 cut(s)	10, 481, 1006, 1099
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	3 cut(s)	46, 905, 1135
AsuC2I	CCSGG	1 cut(s)	932
AsuHPI	GGTGA	4 cut(s)	220, 428, 557, 1002
AsuII	TTCGAA	1 cut(s)	1097
AvaII	GGWCC	2 cut(s)	905, 1135
BaeGI	GKGCMC	1 cut(s)	792
BalI	TGGCCA	1 cut(s)	771
BanII	GRGCYC	1 cut(s)	1001
BarI	GAAGNNNNNNTAC	4 cut(s)	100, 132, 514, 546
BbsI	GAAGAC	1 cut(s)	1032
Bbv12I	GWGCWC	1 cut(s)	1001
BbvI	GCAGC	4 cut(s)	306, 445, 448, 1099
BccI	CCATC	4 cut(s)	62, 608, 859, 886
BciT130I	CCWGG	1 cut(s)	687
BclI	TGATCA	2 cut(s)	427, 595
BcnI	CCSGG	1 cut(s)	932
BcoDI	GTCTC	1 cut(s)	166
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	2 cut(s)	300, 957
BisI	GCNGC	4 cut(s)	320, 459, 462, 1088
BlsI	GCNGC	4 cut(s)	321, 460, 463, 1089
BmcAI	AGTACT	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	687, 932
Bme18I	GGWCC	2 cut(s)	905, 1135
BmgT120I	GGNCC	3 cut(s)	46, 905, 1135
BmrFI	CCNGG	2 cut(s)	687, 932
BmsI	GCATC	1 cut(s)	104
BoxI	GACNNNNGTC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	1032
Bpu14I	TTCGAA	1 cut(s)	1097
BpuMI	CCSGG	1 cut(s)	932
BsaAI	YACGTR	1 cut(s)	158
BsaBI	GATNNNNATC	2 cut(s)	594, 600
BsaJI	CCNNGG	5 cut(s)	146, 204, 661, 705, 772
BsaXI	ACNNNNNCTCC	2 cut(s)	1002, 1032
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 937
Bse1I	ACTGG	3 cut(s)	320, 439, 785
Bse3DI	GCAATG	1 cut(s)	829
Bse8I	GATNNNNATC	2 cut(s)	594, 600
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	5 cut(s)	146, 204, 661, 705, 772
BseGI	GGATG	1 cut(s)	670
BseJI	GATNNNNATC	2 cut(s)	594, 600
BseLI	CCNNNNNNNGG	2 cut(s)	210, 937
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	2 cut(s)	255, 659
BseNI	ACTGG	3 cut(s)	320, 439, 785
BseSI	GKGCMC	1 cut(s)	792
BseXI	GCAGC	4 cut(s)	306, 445, 448, 1099
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	3 cut(s)	48, 690, 771
BsiHKAI	GWGCWC	1 cut(s)	1001
BsiSI	CCGG	1 cut(s)	932
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	210, 937
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	3 cut(s)	48, 690, 771
Bsp119I	TTCGAA	1 cut(s)	1097
Bsp1286I	GDGCHC	2 cut(s)	792, 1001
Bsp143I	GATC	7 cut(s)	427, 502, 547, 595, 799, 857, 968
Bsp19I	CCATGG	2 cut(s)	705, 772
BspANI	GGCC	3 cut(s)	48, 690, 771
BspCNI	CTCAG	2 cut(s)	254, 658
BspFNI	CGCG	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	424
BspPI	GGATC	1 cut(s)	865
BspT104I	TTCGAA	1 cut(s)	1097
BsrDI	GCAATG	1 cut(s)	829
BsrI	ACTGG	3 cut(s)	320, 439, 785
BssECI	CCNNGG	5 cut(s)	146, 204, 661, 705, 772
BssMI	GATC	7 cut(s)	427, 502, 547, 595, 799, 857, 968
BssT1I	CCWWGG	4 cut(s)	146, 661, 705, 772
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	2 cut(s)	77, 208
Bst6I	CTCTTC	1 cut(s)	1050
BstBAI	YACGTR	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	1097
BstC8I	GCNNGC	1 cut(s)	692
BstDEI	CTNAG	3 cut(s)	241, 290, 645
BstDSI	CCRYGG	3 cut(s)	204, 705, 772
BstEII	GGTNACC	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	670
BstFNI	CGCG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	7 cut(s)	430, 505, 550, 598, 802, 860, 971
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	7 cut(s)	427, 502, 547, 595, 799, 857, 968
BstNI	CCWGG	1 cut(s)	687
BstPAI	GACNNNNGTC	1 cut(s)	127
BstPI	GGTNACC	1 cut(s)	434
BstSCI	CCNGG	2 cut(s)	685, 930
BstSLI	GKGCMC	1 cut(s)	792
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	4 cut(s)	306, 445, 448, 1099
BstV2I	GAAGAC	1 cut(s)	1032
BstX2I	RGATCY	1 cut(s)	857
BstYI	RGATCY	1 cut(s)	857
BsuRI	GGCC	3 cut(s)	48, 690, 771
BtgI	CCRYGG	3 cut(s)	204, 705, 772
BtsCI	GGATG	1 cut(s)	670
BtsIMutI	CAGTG	1 cut(s)	792
Cac8I	GCNNGC	1 cut(s)	692
CciI	TCATGA	1 cut(s)	424
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	3 cut(s)	46, 905, 1135
Csp6I	GTAC	4 cut(s)	108, 155, 245, 948
CviAII	CATG	6 cut(s)	374, 425, 575, 706, 773, 1036
CviQI	GTAC	4 cut(s)	108, 155, 245, 948
DdeI	CTNAG	3 cut(s)	241, 290, 645
DpnI	GATC	7 cut(s)	429, 504, 549, 597, 801, 859, 970
DpnII	GATC	7 cut(s)	427, 502, 547, 595, 799, 857, 968
EaeI	YGGCCR	1 cut(s)	769
Eam1104I	CTCTTC	1 cut(s)	1050
EarI	CTCTTC	1 cut(s)	1050
Ecl136II	GAGCTC	1 cut(s)	999
Eco130I	CCWWGG	4 cut(s)	146, 661, 705, 772
Eco24I	GRGCYC	1 cut(s)	1001
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	2 cut(s)	905, 1135
Eco53kI	GAGCTC	1 cut(s)	999
Eco57I	CTGAAG	2 cut(s)	354, 1031
Eco91I	GGTNACC	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	999
EcoO65I	GGTNACC	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	1099
EcoRII	CCWGG	1 cut(s)	685
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	4 cut(s)	146, 661, 705, 772
EcoT38I	GRGCYC	1 cut(s)	1001
ErhI	CCWWGG	4 cut(s)	146, 661, 705, 772
FaeI	CATG	6 cut(s)	377, 428, 578, 709, 776, 1039
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	6 cut(s)	373, 424, 574, 705, 772, 1035
FauNDI	CATATG	1 cut(s)	813
FbaI	TGATCA	2 cut(s)	427, 595
Fnu4HI	GCNGC	4 cut(s)	320, 459, 462, 1088
FokI	GGATG	1 cut(s)	657
FriOI	GRGCYC	1 cut(s)	1001
Fsp4HI	GCNGC	4 cut(s)	320, 459, 462, 1088
FspBI	CTAG	2 cut(s)	300, 957
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	4 cut(s)	320, 459, 462, 1088
HaeIII	GGCC	3 cut(s)	48, 690, 771
HapII	CCGG	1 cut(s)	932
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	6 cut(s)	377, 428, 578, 709, 776, 1039
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	932
HphI	GGTGA	4 cut(s)	220, 428, 557, 1002
Hpy166II	GTNNAC	1 cut(s)	632
Hpy188I	TCNGA	4 cut(s)	176, 552, 648, 736
Hpy188III	TCNNGA	6 cut(s)	120, 132, 275, 425, 611, 855
Hpy8I	GTNNAC	1 cut(s)	632
HpyAV	CCTTC	4 cut(s)	181, 281, 684, 750
HpyCH4III	ACNGT	2 cut(s)	77, 208
HpyCH4IV	ACGT	1 cut(s)	157
HpyF3I	CTNAG	3 cut(s)	241, 290, 645
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	6 cut(s)	377, 428, 578, 709, 776, 1039
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	2 cut(s)	427, 595
Kzo9I	GATC	7 cut(s)	427, 502, 547, 595, 799, 857, 968
LmnI	GCTCC	3 cut(s)	357, 469, 1095
Lsp1109I	GCAGC	4 cut(s)	306, 445, 448, 1099
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	2 cut(s)	300, 957
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	328, 434
MalI	GATC	7 cut(s)	429, 504, 549, 597, 801, 859, 970
MboI	GATC	7 cut(s)	427, 502, 547, 595, 799, 857, 968
MboII	GAAGA	5 cut(s)	347, 477, 862, 1032, 1037
MfeI	CAATTG	1 cut(s)	863
MflI	RGATCY	1 cut(s)	857
MhlI	GDGCHC	2 cut(s)	792, 1001
MlsI	TGGCCA	1 cut(s)	771
MluNI	TGGCCA	1 cut(s)	771
MmeI	TCCRAC	1 cut(s)	1091
Mox20I	TGGCCA	1 cut(s)	771
MscI	TGGCCA	1 cut(s)	771
MseI	TTAA	1 cut(s)	1144
MslI	CAYNNNNRTG	2 cut(s)	423, 612
Msp20I	TGGCCA	1 cut(s)	771
MspI	CCGG	1 cut(s)	932
MspR9I	CCNGG	2 cut(s)	687, 932
MunI	CAATTG	1 cut(s)	863
MvaI	CCWGG	1 cut(s)	687
MvnI	CGCG	1 cut(s)	166
NciI	CCSGG	1 cut(s)	932
NcoI	CCATGG	2 cut(s)	705, 772
NdeI	CATATG	1 cut(s)	813
NdeII	GATC	7 cut(s)	427, 502, 547, 595, 799, 857, 968
NlaIII	CATG	6 cut(s)	377, 428, 578, 709, 776, 1039
NmuCI	GTSAC	1 cut(s)	434
NspV	TTCGAA	1 cut(s)	1097
PagI	TCATGA	1 cut(s)	424
PkrI	GCNGC	4 cut(s)	321, 460, 463, 1089
Ppu21I	YACGTR	1 cut(s)	158
PshAI	GACNNNNGTC	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	1001
Psp6I	CCWGG	1 cut(s)	685
PspEI	GGTNACC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	685
PspPI	GGNCC	3 cut(s)	46, 905, 1135
PsuI	RGATCY	1 cut(s)	857
RsaI	GTAC	4 cut(s)	109, 156, 246, 949
RsaNI	GTAC	4 cut(s)	108, 155, 245, 948
RseI	CAYNNNNRTG	2 cut(s)	423, 612
SacI	GAGCTC	1 cut(s)	1001
SaqAI	TTAA	1 cut(s)	1144
SatI	GCNGC	4 cut(s)	320, 459, 462, 1088
Sau3AI	GATC	7 cut(s)	427, 502, 547, 595, 799, 857, 968
Sau96I	GGNCC	3 cut(s)	46, 905, 1135
ScaI	AGTACT	1 cut(s)	109
ScrFI	CCNGG	2 cut(s)	687, 932
SduI	GDGCHC	2 cut(s)	792, 1001
SfaNI	GCATC	1 cut(s)	104
SfuI	TTCGAA	1 cut(s)	1097
SinI	GGWCC	2 cut(s)	905, 1135
SmiMI	CAYNNNNRTG	2 cut(s)	423, 612
SpeI	ACTAGT	1 cut(s)	956
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	2 cut(s)	300, 957
SstI	GAGCTC	1 cut(s)	1001
StyD4I	CCNGG	2 cut(s)	685, 930
StyI	CCWWGG	4 cut(s)	146, 661, 705, 772
TaaI	ACNGT	2 cut(s)	77, 208
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	1097
TaqII	GACCGA	2 cut(s)	893, 1063
TatI	WGTACW	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	1144
Tru9I	TTAA	1 cut(s)	1144
TscAI	CASTG	1 cut(s)	792
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	4 cut(s)	319, 458, 461, 1087
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	3 cut(s)	383, 477, 594
TspGWI	ACGGA	1 cut(s)	906
TspRI	CASTG	1 cut(s)	792
VpaK11BI	GGWCC	2 cut(s)	905, 1135
XapI	RAATTY	4 cut(s)	10, 481, 1006, 1099
XcmI	CCANNNNNNNNNTGG	2 cut(s)	371, 934
XspI	CTAG	2 cut(s)	300, 957
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.