Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007661

Physical Location & Seq

Genomic Coordinates Forward (+)

21955556 .. 21956692

Gene Structure 1137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGATAACAAATTCAAGGGACAAGGGTTTCCAAGCCAAGCAAGAGGGCCACAACAACAACAATAACAATGATGGGAACAACAATAGCAGTTTTCTTAAGGCATCATCATCAAGTACTACTACTTCAAGGCAATGGTCTGGATTTAGAAATCCAAGGATCGATCTACGTGTTTCGCGTACTTTCGGTGGGAAAGATAGGCACAGCAAGGTTTCCACAGTGAGGGGATTGAGGGACAGGAGAATTAGGCTTTCAGTACCAACAGCCATTCAATTATATGATCTTCAAGATAGGCTTGGTCTTAGCCAACCTAGCAAGGTAATAGACTGGCTGCTTGACATTACGGAACAAGATATCGATAAGCTCCCTCCACTTCAAGTTCCTCATGGATTTGGTCATCAATTTCATCAACCAATGCTAAATCCTCATAAAGCTGGTAATTCTCTTGTTGCTCCTTTCTTTGATGTAAATTCTACTTTTATGGAGGCAGACCAAGTTGATCATCAAGAACTTCATGATCAAGCAAAAGGCAAGTCGATCAGGACAAACGACGGACAAGATGATCAAAATCGTCATGATCACGAAGGAAATGTTAGTGGACAACTCTTAGCTCAAAAGCTATTTCCCATAGGCAATCATCCTTCTTCCATACCTGGCTTGCTAAACAATGCAATGGCATACAACTACTATCACAACTATTCAGAGCCTTCAACGCTATCTCTAGCGCAGTTTGGTAGCCATGAATTTCCACAAGTAACACAAATAGATCAGCATCATAGTCACATGATGAGTACTAATGCCTTGTCATTTTCAACTCCAATGCCATCTGTTTCTCAATTATTCTTCTGTCCACCTACAGCAACACCGACGCTTTTCGGTTCATATCCTCCATATATTACCAATCCAATAGTGGAGGGTACTAGTACTGCTACTGATCAGCCTCGACAAGCCAACCATTTCCAATTTTTGAGCTCACCAAGTAATTCACAAAATTTCCTAGCTAACAATGCTCTCATGCCTCCTCTTCATTCAGTTAGCTCATCCTTGAAATCCTTTCCATCATTGGTTCATCCCAAGCAGCAGCTCCATTTGAATTCACAAAATAACAATGGAAGCCAACCAAATAAAGACGTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

379

Amino Acids

42.11

Weight (kDa)

7.38

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	63 - 182	6.1e-26	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08070 AT5G08070 AT5G60970
fragaria_vesca	FvH4_5g13710 FvH4_5g13710
malus_domestica	MD06G1226300.v1.1 MD14G1213400.v1.1
prunus_persica	Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1 Prupe.5G206400_v2.0.a1
pyrus_communis	pycom06g18050 pycom14g17680
rosa_chinensis	RchiOBHm_Chr7g0183231
rosa_laevigata	RLG00000005063
rosa_multiflora	Rmu_sc0008744.1_g000013
rosa_roxburghii	Rroxscaffold_3G00270630
rosa_rugosa	Rorug06G0455400 Rorug06G0455400 Rorug06G0455400
rosa_samantha	Rh7AG057400 Rh7BG057300 Rh7CG058900 Rh7DG057100
rosa_wichuraiana	Rw7G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	175
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	5 cut(s)	10, 466, 740, 988, 1090
AfaI	GTAC	6 cut(s)	115, 178, 255, 790, 916, 922
AfiI	CCNNNNNNNGG	1 cut(s)	219
AflII	CTTAAG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	9 cut(s)	15, 126, 269, 284, 374, 708, 810, 1045, 1090
AhlI	ACTAGT	1 cut(s)	917
AjnI	CCWGG	1 cut(s)	649
AluBI	AGCT	8 cut(s)	361, 431, 608, 616, 969, 998, 1035, 1081
AluI	AGCT	8 cut(s)	361, 431, 608, 616, 969, 998, 1035, 1081
Alw21I	GWGCWC	1 cut(s)	971
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	3 cut(s)	328, 1075, 1078
ApoI	RAATTY	5 cut(s)	10, 466, 740, 988, 1090
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AspLEI	GCGC	1 cut(s)	724
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	963
BanII	GRGCYC	1 cut(s)	971
BarI	GAAGNNNNNNTAC	2 cut(s)	106, 138
Bbv12I	GWGCWC	1 cut(s)	971
BbvI	GCAGC	3 cut(s)	315, 1087, 1090
BccI	CCATC	3 cut(s)	65, 829, 1063
BciT130I	CCWGG	1 cut(s)	651
BclI	TGATCA	5 cut(s)	496, 514, 559, 574, 931
BcuI	ACTAGT	1 cut(s)	917
BfaI	CTAG	4 cut(s)	309, 719, 918, 995
BfmI	CTRYAG	1 cut(s)	852
BfrI	CTTAAG	1 cut(s)	95
BisI	GCNGC	3 cut(s)	329, 1076, 1079
BlsI	GCNGC	3 cut(s)	330, 1077, 1080
BmcAI	AGTACT	3 cut(s)	115, 790, 922
Bme1390I	CCNGG	1 cut(s)	651
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	651
BmsI	GCATC	2 cut(s)	110, 778
Bsa29I	ATCGAT	2 cut(s)	159, 354
BsaAI	YACGTR	1 cut(s)	167
BsaBI	GATNNNNATC	2 cut(s)	564, 768
BsaJI	CCNNGG	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	329
Bse3DI	GCAATG	2 cut(s)	137, 675
Bse8I	GATNNNNATC	2 cut(s)	564, 768
BseBI	CCWGG	1 cut(s)	651
BseCI	ATCGAT	2 cut(s)	159, 354
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	3 cut(s)	634, 1037, 1066
BseJI	GATNNNNATC	2 cut(s)	564, 768
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	2 cut(s)	137, 675
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	1008
BseXI	GCAGC	3 cut(s)	315, 1087, 1090
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	48
BshVI	ATCGAT	2 cut(s)	159, 354
BsiHKAI	GWGCWC	1 cut(s)	971
BslFI	GGGAC	2 cut(s)	32, 245
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmFI	GGGAC	2 cut(s)	32, 245
BsnI	GGCC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	971
BspANI	GGCC	1 cut(s)	48
BspDI	ATCGAT	2 cut(s)	159, 354
BspFNI	CGCG	1 cut(s)	175
BspHI	TCATGA	2 cut(s)	511, 571
BspPI	GGATC	1 cut(s)	164
BspTI	CTTAAG	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	137, 675
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	651
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	1026
BstAFI	CTTAAG	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	656
BstDEI	CTNAG	2 cut(s)	299, 604
BstF5I	GGATG	3 cut(s)	634, 1037, 1066
BstFNI	CGCG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	724
BstMWI	GCNNNNNNNGC	3 cut(s)	309, 709, 1004
BstNI	CCWGG	1 cut(s)	651
BstSCI	CCNGG	1 cut(s)	649
BstSFI	CTRYAG	1 cut(s)	852
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	3 cut(s)	315, 1087, 1090
Bsu15I	ATCGAT	2 cut(s)	159, 354
BsuRI	GGCC	1 cut(s)	48
BsuTUI	ATCGAT	2 cut(s)	159, 354
BtsCI	GGATG	3 cut(s)	634, 1037, 1066
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	656
CciI	TCATGA	2 cut(s)	511, 571
CfoI	GCGC	1 cut(s)	724
Cfr13I	GGNCC	1 cut(s)	46
ClaI	ATCGAT	2 cut(s)	159, 354
CseI	GACGC	1 cut(s)	874
Csp6I	GTAC	6 cut(s)	114, 177, 254, 789, 915, 921
CviAII	CATG	6 cut(s)	383, 512, 572, 737, 781, 1012
CviQI	GTAC	6 cut(s)	114, 177, 254, 789, 915, 921
DdeI	CTNAG	2 cut(s)	299, 604
Eam1104I	CTCTTC	1 cut(s)	1026
EarI	CTCTTC	1 cut(s)	1026
Ecl136II	GAGCTC	1 cut(s)	969
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	971
Eco32I	GATATC	1 cut(s)	352
Eco53kI	GAGCTC	1 cut(s)	969
EcoICRI	GAGCTC	1 cut(s)	969
EcoRI	GAATTC	1 cut(s)	1090
EcoRII	CCWGG	1 cut(s)	649
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	971
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	6 cut(s)	386, 515, 575, 740, 784, 1015
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	2 cut(s)	32, 245
FatI	CATG	6 cut(s)	382, 511, 571, 736, 780, 1011
FbaI	TGATCA	5 cut(s)	496, 514, 559, 574, 931
Fnu4HI	GCNGC	3 cut(s)	329, 1076, 1079
FokI	GGATG	3 cut(s)	621, 1024, 1053
FriOI	GRGCYC	1 cut(s)	971
Fsp4HI	GCNGC	3 cut(s)	329, 1076, 1079
FspBI	CTAG	4 cut(s)	309, 719, 918, 995
GlaI	GCGC	1 cut(s)	723
GluI	GCNGC	3 cut(s)	329, 1076, 1079
HaeIII	GGCC	1 cut(s)	48
HgaI	GACGC	1 cut(s)	874
HhaI	GCGC	1 cut(s)	724
Hin1II	CATG	6 cut(s)	386, 515, 575, 740, 784, 1015
Hin6I	GCGC	1 cut(s)	722
HinP1I	GCGC	1 cut(s)	722
HphI	GGTGA	1 cut(s)	963
Hpy166II	GTNNAC	2 cut(s)	596, 848
Hpy188I	TCNGA	1 cut(s)	700
Hpy188III	TCNNGA	7 cut(s)	138, 284, 503, 512, 538, 572, 578
Hpy8I	GTNNAC	2 cut(s)	596, 848
Hpy99I	CGWCG	2 cut(s)	551, 868
HpyAV	CCTTC	3 cut(s)	575, 648, 714
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	166, 1128
HpyCH4V	TGCA	1 cut(s)	668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	309, 709, 1004
HpyF3I	CTNAG	2 cut(s)	299, 604
HpySE526I	ACGT	2 cut(s)	166, 1128
Hsp92II	CATG	6 cut(s)	386, 515, 575, 740, 784, 1015
HspAI	GCGC	1 cut(s)	722
Ksp22I	TGATCA	5 cut(s)	496, 514, 559, 574, 931
LmnI	GCTCC	3 cut(s)	366, 454, 1086
LpnPI	CCDG	7 cut(s)	123, 220, 310, 417, 523, 636, 663
Lsp1109I	GCAGC	3 cut(s)	315, 1087, 1090
LweI	GCATC	2 cut(s)	110, 778
MaeI	CTAG	4 cut(s)	309, 719, 918, 995
MaeII	ACGT	2 cut(s)	166, 1128
MaeIII	GTNAC	2 cut(s)	751, 776
MboII	GAAGA	4 cut(s)	272, 633, 832, 1013
MhlI	GDGCHC	1 cut(s)	971
MseI	TTAA	1 cut(s)	96
MspCI	CTTAAG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	651
MvaI	CCWGG	1 cut(s)	651
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	3 cut(s)	309, 709, 1004
NlaIII	CATG	6 cut(s)	386, 515, 575, 740, 784, 1015
NmuCI	GTSAC	1 cut(s)	776
PagI	TCATGA	2 cut(s)	511, 571
PcsI	WCGNNNNNNNCGW	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	330, 1077, 1080
Ppu21I	YACGTR	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	971
Psp6I	CCWGG	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	649
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	6 cut(s)	115, 178, 255, 790, 916, 922
RsaNI	GTAC	6 cut(s)	114, 177, 254, 789, 915, 921
SacI	GAGCTC	1 cut(s)	971
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	3 cut(s)	329, 1076, 1079
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	3 cut(s)	115, 790, 922
ScrFI	CCNGG	1 cut(s)	651
SduI	GDGCHC	1 cut(s)	971
SfaNI	GCATC	2 cut(s)	110, 778
SfcI	CTRYAG	1 cut(s)	852
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SpeI	ACTAGT	1 cut(s)	917
SspMI	CTAG	4 cut(s)	309, 719, 918, 995
SstI	GAGCTC	1 cut(s)	971
StyD4I	CCNGG	1 cut(s)	649
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	2 cut(s)	169, 1131
TaqI	TCGA	4 cut(s)	159, 354, 533, 940
TatI	WGTACW	3 cut(s)	113, 788, 920
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	776
TseI	GCWGC	3 cut(s)	328, 1075, 1078
Tsp45I	GTSAC	1 cut(s)	776
TspDTI	ATGAA	6 cut(s)	392, 500, 753, 867, 1013, 1055
TspGWI	ACGGA	2 cut(s)	356, 564
TspRI	CASTG	1 cut(s)	222
Vha464I	CTTAAG	1 cut(s)	95
XapI	RAATTY	5 cut(s)	10, 466, 740, 988, 1090
XcmI	CCANNNNNNNNNTGG	1 cut(s)	904
XspI	CTAG	4 cut(s)	309, 719, 918, 995
ZrmI	AGTACT	3 cut(s)	115, 790, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.