AT5G08430

Plus-3 domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
2716313 .. 2720442
4130 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G08430.2

Sequence Viewer

Length: 1662 bp
ATGGGGGATATAACTTGGGTTGAAGAGGGTAATGGCTCTGCGACTTCTTCGAGGAAAAGGAAAGCGAGACCTAAACGATTCGAATTTGTAGGATGGGGTTCGAGACAACTCATTGAGTTTCTACACTCTCTTGGTAAAGATACTTCAGAAATGATCTCTCGTTATGATGTTAGTGACACTATTGCTAAGTATATTTCAAAGGAAGGTCTTTTAGATCCTTCCAATAAGAAGAAAGTTGTGTGCGACAAAAGATTGGTTTTGCTTTTCGGGACTAGGACGATTTTCAGAATGAAAGTCTATGATCTCCTTGAAAAGCATTACAAAGAGAATCAGGATGATTCTGACTTTGATTTTCTCTACGAGGATGAGCCGCAGATTATTTGTCATTCGGAGAAGATAGCTAAACGGACAAGTAAGGTTGTTAAGAAACCTAGAGGTACTTTTGCTGCTATTGTGAGTGATAATATCAAGCTTCTCTACTTGAGAAAGAGCTTAGTCCAGGAACTGCTCAAGTCTCCTGATACCTTTGAGGGTAAAATGTTGGGAAGTTTTGTGAGGATCAAGTCTGACCCTAATGATTATCTTCAGAAGTACCCTTATCAGCTTGTTCAGGTGACAGGCGTGAAGAAGGAACATGGGACTGATGATTTTCTTCTTCAGGTTACAAATTATGTGAAAGATGTTTCTATATCTGTGCTATCTGATGATAATTTCTCCCAGGAGGAATGTGAAGATTTACATCAGAGAATAAAGAACGGACTTCTTAAGAAGCCTACTATTGTGGAGATGGAAGAAAAAGCTAAAAAATTACATAAAGATCAAACAAAACACTGGCTTGGAAGAGAAATTGAATTGTTAAAAAGGCTTATTGATCGGGCTAATGAGAAGGGATGGCGAAGAGAGCTGTCCGAGTACCTAGATAAGAGGGAGCTTCTTCAAAATCCAGATGAACAGGCCAGGCTACTCCGCGAAGTTCCAGAAGTTATTGGAGAGGAACTTGTACAAAACCCTGAAGTTTCGTCCCCTGAGGCTCATAAAAGTGACAACGAGCAACGATTGAGTGAATCTCCATTATCGTGCATCCATGAAACCCCAGAAGCTCGCAACCTCTTTGGTGGAGAAGATCAACAATTTAATAACGGCTATGTGATGTCAAACCCCATCACAACTCCGGGAATCACATCTTGTGCTACGGAAATTAACAAGGGATTGCCAACATGGATTGCTTCTGCAGGTGCTGAGTATCTTCATGTAGATGTAGAGCAGCCAGCAAATGGCATCATTGGAGGAGAGACGCCGACTGAAGAGTCTAAAGTTTCTCAGCTTCAGTCAAGTATACCAGTAAATAATGTCGACAACGGATCTCAAGTTCAACCAAATCCATCAGAAGTAATCGAACTGAGCGATGATGATGAAGATGACAACGGTGATGGAGAGACCCTGGACCCTAAAGTTGAAGACGTCCGGGTTCTGTCTTATGATAAAGAGAAGTTAAACTGGTTATACAAAGATCCTCAGGGTCTTGTACAGGGACCATTCTCTCTCACACAACTCAAAGCTTGGAGCGACGCAGAGTATTTCACCAAACAGTTCAGGGTTTGGATGACAGGAGAAAGCATGGAATCCGCAGTTTTACTAACCGATGTTCTTCGTCTAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

553

Amino Acids

63.07

Weight (kDa)

5.14

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 35 - 106 6.1e-10 SWIB/MDM2 domain
Plus-3 PF03126 155 - 250 4.3e-15 Plus-3 domain
NERD_plant PF25980 273 - 321 1.1e-22 Plant NERD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1223
AasI GACNNNNNNGTC 1 cut(s) 1306
AatII GACGTC 1 cut(s) 1464
Acc36I ACCTGC 1 cut(s) 1223
AccB7I CCANNNNNTGG 1 cut(s) 1274
AccI GTMKAC 2 cut(s) 1336, 1353
AccII CGCG 1 cut(s) 969
AciI CCGC 3 cut(s) 371, 967, 1626
AclWI GGATC 4 cut(s) 209, 566, 1369, 1505
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 6 cut(s) 129, 569, 641, 1032, 1310, 1323
AcyI GRCGYC 2 cut(s) 1295, 1461
AfaI GTAC 5 cut(s) 439, 593, 914, 1002, 1527
AfiI CCNNNNNNNGG 1 cut(s) 1274
AflII CTTAAG 1 cut(s) 764
AgsI TTSAA 7 cut(s) 23, 198, 311, 851, 938, 1373, 1457
AjnI CCWGG 4 cut(s) 498, 717, 956, 1440
AloI GAACNNNNNNTCC 2 cut(s) 1353, 1385
Alw26I GTCTC 5 cut(s) 61, 97, 519, 1286, 1430
AlwI GGATC 4 cut(s) 209, 566, 1369, 1505
AlwNI CAGNNNCTG 2 cut(s) 505, 1238
AoxI GGCC 1 cut(s) 954
ApeKI GCWGC 2 cut(s) 446, 1264
ApoI RAATTY 1 cut(s) 83
AspS9I GGNCC 2 cut(s) 1444, 1532
AsuC2I CCSGG 2 cut(s) 1173, 1466
AsuHPI GGTGA 3 cut(s) 625, 1439, 1573
AsuII TTCGAA 1 cut(s) 81
AvaII GGWCC 2 cut(s) 1444, 1532
AxyI CCTNAGG 2 cut(s) 1026, 1515
BarI GAAGNNNNNNTAC 2 cut(s) 127, 159
BbsI GAAGAC 1 cut(s) 1464
BbvI GCAGC 2 cut(s) 433, 1276
BccI CCATC 6 cut(s) 87, 781, 885, 1169, 1390, 1424
BceAI ACGGC 1 cut(s) 1156
BciT130I CCWGG 4 cut(s) 500, 719, 958, 1442
BcnI CCSGG 2 cut(s) 1173, 1466
BcoDI GTCTC 5 cut(s) 61, 97, 519, 1286, 1430
BfaI CTAG 4 cut(s) 273, 432, 917, 1655
BfmI CTRYAG 1 cut(s) 1230
BfrI CTTAAG 1 cut(s) 764
BfuAI ACCTGC 1 cut(s) 1223
BisI GCNGC 3 cut(s) 371, 447, 1265
BlsI GCNGC 3 cut(s) 372, 448, 1266
Bme1390I CCNGG 6 cut(s) 500, 719, 958, 1173, 1442, 1466
Bme18I GGWCC 2 cut(s) 1444, 1532
BmgT120I GGNCC 2 cut(s) 1444, 1532
BmiI GGNNCC 2 cut(s) 1446, 1533
BmrFI CCNGG 6 cut(s) 500, 719, 958, 1173, 1442, 1466
BmsI GCATC 2 cut(s) 1089, 1287
BpiI GAAGAC 1 cut(s) 1464
BplI GAGNNNNNCTC 2 cut(s) 1051, 1083
Bpu14I TTCGAA 1 cut(s) 81
BpuEI CTTGAG 3 cut(s) 494, 502, 1350
BpuMI CCSGG 2 cut(s) 1173, 1466
BsaBI GATNNNNATC 1 cut(s) 738
BsaHI GRCGYC 2 cut(s) 1295, 1461
BsaI GGTCTC 2 cut(s) 61, 1430
BsaJI CCNNGG 2 cut(s) 717, 1440
Bsc4I CCNNNNNNNGG 1 cut(s) 1274
Bse1I ACTGG 3 cut(s) 836, 1340, 1502
Bse21I CCTNAGG 2 cut(s) 1026, 1515
Bse8I GATNNNNATC 1 cut(s) 738
BseBI CCWGG 4 cut(s) 500, 719, 958, 1442
BseDI CCNNGG 2 cut(s) 717, 1440
BseGI GGATG 6 cut(s) 98, 340, 370, 896, 1080, 1608
BseJI GATNNNNATC 1 cut(s) 738
BseLI CCNNNNNNNGG 1 cut(s) 1274
BseMII CTCAG 5 cut(s) 1017, 1230, 1334, 1391, 1529
BseNI ACTGG 3 cut(s) 836, 1340, 1502
BseRI GAGGAG 1 cut(s) 1302
BseXI GCAGC 2 cut(s) 433, 1276
Bsh1236I CGCG 1 cut(s) 969
BshFI GGCC 1 cut(s) 956
BsiSI CCGG 2 cut(s) 1172, 1465
BslFI GGGAC 4 cut(s) 283, 652, 1006, 1545
BslI CCNNNNNNNGG 1 cut(s) 1274
BsmAI GTCTC 5 cut(s) 61, 97, 519, 1286, 1430
BsmBI CGTCTC 1 cut(s) 1286
BsmFI GGGAC 4 cut(s) 283, 652, 1006, 1545
BsnI GGCC 1 cut(s) 956
Bso31I GGTCTC 2 cut(s) 61, 1430
Bsp119I TTCGAA 1 cut(s) 81
Bsp1407I TGTACA 2 cut(s) 1000, 1525
Bsp143I GATC 9 cut(s) 153, 214, 301, 558, 817, 871, 1123, 1361, 1510
BspACI CCGC 3 cut(s) 371, 967, 1626
BspANI GGCC 1 cut(s) 956
BspCNI CTCAG 5 cut(s) 1018, 1231, 1333, 1392, 1528
BspFNI CGCG 1 cut(s) 969
BspLI GGNNCC 2 cut(s) 1446, 1533
BspMAI CTGCAG 1 cut(s) 1234
BspMI ACCTGC 1 cut(s) 1223
BspPI GGATC 4 cut(s) 209, 566, 1369, 1505
BspT104I TTCGAA 1 cut(s) 81
BspTI CTTAAG 1 cut(s) 764
BspTNI GGTCTC 2 cut(s) 61, 1430
BsrGI TGTACA 2 cut(s) 1000, 1525
BsrI ACTGG 3 cut(s) 836, 1340, 1502
BssECI CCNNGG 2 cut(s) 717, 1440
BssMI GATC 9 cut(s) 153, 214, 301, 558, 817, 871, 1123, 1361, 1510
BssNAI GTATAC 1 cut(s) 1337
BssNI GRCGYC 2 cut(s) 1295, 1461
Bst1107I GTATAC 1 cut(s) 1337
Bst2UI CCWGG 4 cut(s) 500, 719, 958, 1442
Bst4CI ACNGT 2 cut(s) 1427, 1590
Bst6I CTCTTC 4 cut(s) 18, 835, 892, 1299
BstACI GRCGYC 2 cut(s) 1295, 1461
BstAFI CTTAAG 1 cut(s) 764
BstAUI TGTACA 2 cut(s) 1000, 1525
BstBI TTCGAA 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 1102, 1269
BstDEI CTNAG 7 cut(s) 186, 493, 1026, 1239, 1320, 1400, 1515
BstF5I GGATG 6 cut(s) 98, 340, 370, 896, 1080, 1608
BstFNI CGCG 1 cut(s) 969
BstKTI GATC 9 cut(s) 156, 217, 304, 561, 820, 874, 1126, 1364, 1513
BstMAI GTCTC 5 cut(s) 61, 97, 519, 1286, 1430
BstMBI GATC 9 cut(s) 153, 214, 301, 558, 817, 871, 1123, 1361, 1510
BstMWI GCNNNNNNNGC 1 cut(s) 901
BstNI CCWGG 4 cut(s) 500, 719, 958, 1442
BstSCI CCNGG 6 cut(s) 498, 717, 956, 1171, 1440, 1464
BstSFI CTRYAG 1 cut(s) 1230
BstUI CGCG 1 cut(s) 969
BstV1I GCAGC 2 cut(s) 433, 1276
BstV2I GAAGAC 1 cut(s) 1464
BstX2I RGATCY 3 cut(s) 214, 1361, 1510
BstYI RGATCY 3 cut(s) 214, 1361, 1510
BstZ17I GTATAC 1 cut(s) 1337
Bsu36I CCTNAGG 2 cut(s) 1026, 1515
BsuRI GGCC 1 cut(s) 956
BtgZI GCGATG 1 cut(s) 1419
BtsCI GGATG 6 cut(s) 98, 340, 370, 896, 1080, 1608
BtsIMutI CAGTG 1 cut(s) 829
BveI ACCTGC 1 cut(s) 1223
Cac8I GCNNGC 2 cut(s) 1102, 1269
CaiI CAGNNNCTG 2 cut(s) 505, 1238
Cfr13I GGNCC 2 cut(s) 1444, 1532
CseI GACGC 2 cut(s) 1303, 1577
Csp6I GTAC 5 cut(s) 438, 592, 913, 1001, 1526
CviAII CATG 5 cut(s) 635, 1085, 1218, 1250, 1618
CviQI GTAC 5 cut(s) 438, 592, 913, 1001, 1526
DdeI CTNAG 7 cut(s) 186, 493, 1026, 1239, 1320, 1400, 1515
DpnI GATC 9 cut(s) 155, 216, 303, 560, 819, 873, 1125, 1363, 1512
DpnII GATC 9 cut(s) 153, 214, 301, 558, 817, 871, 1123, 1361, 1510
DrdI GACNNNNNNGTC 1 cut(s) 1306
DseDI GACNNNNNNGTC 1 cut(s) 1306
Eam1104I CTCTTC 4 cut(s) 18, 835, 892, 1299
EarI CTCTTC 4 cut(s) 18, 835, 892, 1299
Eco31I GGTCTC 2 cut(s) 61, 1430
Eco47I GGWCC 2 cut(s) 1444, 1532
Eco57I CTGAAG 6 cut(s) 129, 569, 641, 1032, 1310, 1323
Eco81I CCTNAGG 2 cut(s) 1026, 1515
EcoRII CCWGG 4 cut(s) 498, 717, 956, 1440
Esp3I CGTCTC 1 cut(s) 1286
FaeI CATG 5 cut(s) 638, 1088, 1221, 1253, 1621
FaqI GGGAC 4 cut(s) 283, 652, 1006, 1545
FatI CATG 5 cut(s) 634, 1084, 1217, 1249, 1617
FblI GTMKAC 2 cut(s) 1336, 1353
Fnu4HI GCNGC 3 cut(s) 371, 447, 1265
FokI GGATG 6 cut(s) 105, 347, 377, 903, 1067, 1615
Fsp4HI GCNGC 3 cut(s) 371, 447, 1265
FspBI CTAG 4 cut(s) 273, 432, 917, 1655
GluI GCNGC 3 cut(s) 371, 447, 1265
HaeIII GGCC 1 cut(s) 956
HapII CCGG 2 cut(s) 1172, 1465
HgaI GACGC 2 cut(s) 1303, 1577
Hin1I GRCGYC 2 cut(s) 1295, 1461
Hin1II CATG 5 cut(s) 638, 1088, 1221, 1253, 1621
HincII GTYRAC 1 cut(s) 1354
HindII GTYRAC 1 cut(s) 1354
HindIII AAGCTT 2 cut(s) 470, 1557
HinfI GANTC 7 cut(s) 78, 328, 338, 1064, 1176, 1307, 1622
HpaII CCGG 2 cut(s) 1172, 1465
HphI GGTGA 3 cut(s) 625, 1439, 1573
Hpy166II GTNNAC 2 cut(s) 1337, 1354
Hpy188III TCNNGA 6 cut(s) 102, 268, 332, 518, 944, 977
Hpy8I GTNNAC 2 cut(s) 1337, 1354
Hpy99I CGWCG 1 cut(s) 1571
HpyAV CCTTC 4 cut(s) 197, 228, 622, 880
HpyCH4III ACNGT 2 cut(s) 1427, 1590
HpyCH4IV ACGT 1 cut(s) 1461
HpyCH4V TGCA 2 cut(s) 1080, 1232
HpyF10VI GCNNNNNNNGC 1 cut(s) 901
HpyF3I CTNAG 7 cut(s) 186, 493, 1026, 1239, 1320, 1400, 1515
HpySE526I ACGT 1 cut(s) 1461
Hsp92I GRCGYC 2 cut(s) 1295, 1461
Hsp92II CATG 5 cut(s) 638, 1088, 1221, 1253, 1621
Kzo9I GATC 9 cut(s) 153, 214, 301, 558, 817, 871, 1123, 1361, 1510
LmnI GCTCC 2 cut(s) 928, 1563
Lsp1109I GCAGC 2 cut(s) 433, 1276
LweI GCATC 2 cut(s) 1089, 1287
MaeI CTAG 4 cut(s) 273, 432, 917, 1655
MaeII ACGT 1 cut(s) 1461
MaeIII GTNAC 4 cut(s) 173, 613, 661, 1040
MalI GATC 9 cut(s) 155, 216, 303, 560, 819, 873, 1125, 1363, 1512
MboI GATC 9 cut(s) 153, 214, 301, 558, 817, 871, 1123, 1361, 1510
MflI RGATCY 3 cut(s) 214, 1361, 1510
MluCI AATT 8 cut(s) 83, 667, 709, 806, 846, 851, 1130, 1197
MlyI GAGTC 1 cut(s) 1316
MseI TTAA 6 cut(s) 423, 765, 857, 1134, 1200, 1493
MslI CAYNNNNRTG 3 cut(s) 1038, 1075, 1254
MspCI CTTAAG 1 cut(s) 764
MspI CCGG 2 cut(s) 1172, 1465
MspR9I CCNGG 6 cut(s) 500, 719, 958, 1173, 1442, 1466
MvaI CCWGG 4 cut(s) 500, 719, 958, 1442
MvnI CGCG 1 cut(s) 969
MwoI GCNNNNNNNGC 1 cut(s) 901
NciI CCSGG 2 cut(s) 1173, 1466
NdeII GATC 9 cut(s) 153, 214, 301, 558, 817, 871, 1123, 1361, 1510
NlaIII CATG 5 cut(s) 638, 1088, 1221, 1253, 1621
NlaIV GGNNCC 2 cut(s) 1446, 1533
NmuCI GTSAC 3 cut(s) 173, 613, 1040
NspV TTCGAA 1 cut(s) 81
PaqCI CACCTGC 1 cut(s) 1223
PcsI WCGNNNNNNNCGW 1 cut(s) 1401
PfeI GAWTC 6 cut(s) 78, 328, 338, 1064, 1176, 1622
PflMI CCANNNNNTGG 1 cut(s) 1274
PfoI TCCNGGA 2 cut(s) 498, 1171
PkrI GCNGC 3 cut(s) 372, 448, 1266
PleI GAGTC 1 cut(s) 1315
PpsI GAGTC 1 cut(s) 1315
Psp6I CCWGG 4 cut(s) 498, 717, 956, 1440
PspGI CCWGG 4 cut(s) 498, 717, 956, 1440
PspN4I GGNNCC 2 cut(s) 1446, 1533
PspPI GGNCC 2 cut(s) 1444, 1532
PstI CTGCAG 1 cut(s) 1234
PstNI CAGNNNCTG 2 cut(s) 505, 1238
PsuI RGATCY 3 cut(s) 214, 1361, 1510
RsaI GTAC 5 cut(s) 439, 593, 914, 1002, 1527
RsaNI GTAC 5 cut(s) 438, 592, 913, 1001, 1526
RseI CAYNNNNRTG 3 cut(s) 1038, 1075, 1254
SalI GTCGAC 1 cut(s) 1352
SaqAI TTAA 6 cut(s) 423, 765, 857, 1134, 1200, 1493
SatI GCNGC 3 cut(s) 371, 447, 1265
Sau3AI GATC 9 cut(s) 153, 214, 301, 558, 817, 871, 1123, 1361, 1510
Sau96I GGNCC 2 cut(s) 1444, 1532
SchI GAGTC 1 cut(s) 1316
ScrFI CCNGG 6 cut(s) 500, 719, 958, 1173, 1442, 1466
SfaNI GCATC 2 cut(s) 1089, 1287
SfcI CTRYAG 1 cut(s) 1230
SfuI TTCGAA 1 cut(s) 81
SinI GGWCC 2 cut(s) 1444, 1532
SmiMI CAYNNNNRTG 3 cut(s) 1038, 1075, 1254
SmlI CTYRAG 4 cut(s) 481, 509, 764, 1365
SmoI CTYRAG 4 cut(s) 481, 509, 764, 1365
Sse9I AATT 8 cut(s) 83, 667, 709, 806, 846, 851, 1130, 1197
SsiI CCGC 3 cut(s) 371, 967, 1626
SspMI CTAG 4 cut(s) 273, 432, 917, 1655
StyD4I CCNGG 6 cut(s) 498, 717, 956, 1171, 1440, 1464
TaaI ACNGT 2 cut(s) 1427, 1590
TaiI ACGT 1 cut(s) 1464
TaqI TCGA 5 cut(s) 50, 81, 101, 1353, 1395
TasI AATT 8 cut(s) 83, 667, 709, 806, 846, 851, 1130, 1197
TatI WGTACW 2 cut(s) 1000, 1525
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 6 cut(s) 78, 328, 338, 1064, 1176, 1622
Tru1I TTAA 6 cut(s) 423, 765, 857, 1134, 1200, 1493
Tru9I TTAA 6 cut(s) 423, 765, 857, 1134, 1200, 1493
TscAI CASTG 1 cut(s) 836
TseFI GTSAC 3 cut(s) 173, 613, 1040
TseI GCWGC 2 cut(s) 446, 1264
Tsp45I GTSAC 3 cut(s) 173, 613, 1040
TspDTI ATGAA 5 cut(s) 305, 963, 1101, 1238, 1428
TspGWI ACGGA 4 cut(s) 421, 771, 1208, 1374
TspRI CASTG 1 cut(s) 836
Van91I CCANNNNNTGG 1 cut(s) 1274
Vha464I CTTAAG 1 cut(s) 764
VpaK11BI GGWCC 2 cut(s) 1444, 1532
XapI RAATTY 1 cut(s) 83
XmiI GTMKAC 2 cut(s) 1336, 1353
XspI CTAG 4 cut(s) 273, 432, 917, 1655
ZraI GACGTC 1 cut(s) 1462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.