Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005946.1

Orthogroup ID

OG0005324

Physical Location & Seq

Genomic Coordinates Forward (+)

24882 .. 29242

Gene Structure 4361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005946.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ctggtgtacctgaggaggtcggtggtggaagctctgctgaagcaggacgaggctcaggtgtttgaggacaaagtcgtggggagctttgtgaggacgaaatcggaccccaatgactatctgcagaagaattctcaccagctaatgcaggtgaaggcgattctgaagaagccgaattcgaattcggaatcgtctgctggaggtggagttcttcttcagcttcatggggctgttagagacttctccatttccatgctctctgatgataacttcttcccggaagaatgtgaggatttacgtgaaagagttaaaggtggtttgctgaagagacctacagtggtggagcttcaacaaaaggtccagattttgcatctggatgtaacaaagcattggcttgtgagagaacttcaatacttacagaactcaattgatcgagcgaatgaaaagggattgcgccgagaatatccttttaaattatttacagcttatatgccatacttgaatatgttgagtaatttaatttgcatagaatctccagatgaacaagcacgtcttttgcgagaggttcctgaagttattgcagaagaattagaggaagaaccaaaagattctccagatgaaacagaacaaggaaaccatggctccccaggacatatcctcaggggagaatcaactcctatttctgaagcatgcgaggataatgattctctgcagaactggcagaagcaacctgcagagtctgtaaaagagatacttgatgcagaggacaacaaggcttctcagcaacttgtggataagcatgtagtgatatctgaggtagtggatctaagtgatgacgacgaaagtgaagaaccagaatctgaagaaaagtacgagattcctattccccagctgggaaccttaatgtggcattattccgatccccagggaaacatacagggtcctttctcaatcatttccttaaagcgctggagtgattctgactactttcctccagatttcaaaatttggaagacagggaataattttagtatatggcattctcgccatagtcataatgttgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB

Protein Analysis

354

Amino Acids

40.58

Weight (kDa)

4.81

Isoelectric Point (pI)

65.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08430 AT5G08430 AT5G23480 AT5G23480 AT5G23480 AT5G23480 AT5G23480 AT5G23480
fragaria_vesca	FvH4_1g25810 FvH4_1g25810 FvH4_1g25810
malus_domestica	MD15G1140400.v1.1
prunus_persica	Prupe.4G286800_v2.0.a1 Prupe.4G286800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484911 RchiOBHm_Chr3g0484921
rosa_laevigata	RLG00000013602 RLG00000023186
rosa_multiflora	Rmu_sc0002231.1_g000024 Rmu_sc0005946.1_g000003 Rmu_sc0005946.1_g000004
rosa_roxburghii	Rroxscaffold_6G00397360
rosa_rugosa	Rorug03G0214200
rosa_samantha	Rh3AG264600 Rh3BG300100 Rh3CG297800 Rh3DG293900 Rh6CG195000
rosa_wichuraiana	Rw3G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	2 cut(s)	136, 736
AclWI	GGATC	2 cut(s)	828, 911
AcsI	RAATTY	4 cut(s)	127, 172, 178, 1002
AcuI	CTGAAG	7 cut(s)	59, 182, 197, 341, 588, 702, 879
AfaI	GTAC	2 cut(s)	8, 869
AfeI	AGCGCT	1 cut(s)	965
AfiI	CCNNNNNNNGG	2 cut(s)	890, 903
AgsI	TTSAA	4 cut(s)	347, 407, 499, 1000
AjiI	CACGTC	1 cut(s)	548
AjnI	CCWGG	2 cut(s)	643, 921
AloI	GAACNNNNNNTCC	2 cut(s)	189, 221
AluBI	AGCT	7 cut(s)	32, 84, 139, 217, 343, 482, 889
AluI	AGCT	7 cut(s)	32, 84, 139, 217, 343, 482, 889
Alw26I	GTCTC	2 cut(s)	228, 319
AlwI	GGATC	2 cut(s)	828, 911
AlwNI	CAGNNNCTG	2 cut(s)	737, 857
Aor51HI	AGCGCT	1 cut(s)	965
ApoI	RAATTY	4 cut(s)	127, 172, 178, 1002
AspLEI	GCGC	2 cut(s)	453, 966
AspS9I	GGNCC	3 cut(s)	103, 355, 938
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	125, 160
AsuII	TTCGAA	1 cut(s)	176
AvaII	GGWCC	3 cut(s)	103, 355, 938
AxyI	CCTNAGG	2 cut(s)	11, 656
BbsI	GAAGAC	1 cut(s)	1016
BciT130I	CCWGG	2 cut(s)	645, 923
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	228, 319
BfmI	CTRYAG	4 cut(s)	119, 330, 707, 729
BfoI	RGCGCY	1 cut(s)	967
BfuAI	ACCTGC	2 cut(s)	136, 736
Bme1390I	CCNGG	3 cut(s)	275, 645, 923
Bme18I	GGWCC	3 cut(s)	103, 355, 938
BmgBI	CACGTC	1 cut(s)	548
BmgT120I	GGNCC	3 cut(s)	103, 355, 938
BmiI	GGNNCC	5 cut(s)	105, 564, 640, 895, 939
BmrFI	CCNGG	3 cut(s)	275, 645, 923
BmsI	GCATC	2 cut(s)	376, 745
BpiI	GAAGAC	1 cut(s)	1016
BpmI	CTGGAG	5 cut(s)	216, 516, 594, 975, 988
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	4 cut(s)	634, 643, 921, 922
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 623, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	890, 903
Bse1I	ACTGG	1 cut(s)	719
Bse21I	CCTNAGG	2 cut(s)	11, 656
BseBI	CCWGG	2 cut(s)	645, 923
BseDI	CCNNGG	4 cut(s)	634, 643, 921, 922
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	890, 903
BseMII	CTCAG	4 cut(s)	68, 670, 791, 801
BseNI	ACTGG	1 cut(s)	719
BseRI	GAGGAG	1 cut(s)	28
BseYI	CCCAGC	2 cut(s)	885, 889
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	890, 903
BsmAI	GTCTC	2 cut(s)	228, 319
BsmI	GAATGC	1 cut(s)	1036
Bso31I	GGTCTC	1 cut(s)	319
Bsp119I	TTCGAA	1 cut(s)	176
Bsp143I	GATC	3 cut(s)	427, 820, 916
Bsp19I	CCATGG	1 cut(s)	634
BspCNI	CTCAG	4 cut(s)	67, 669, 790, 802
BspLI	GGNNCC	5 cut(s)	105, 564, 640, 895, 939
BspMAI	CTGCAG	3 cut(s)	123, 711, 733
BspMI	ACCTGC	2 cut(s)	136, 736
BspPI	GGATC	2 cut(s)	828, 911
BspT104I	TTCGAA	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	719
BssECI	CCNNGG	4 cut(s)	634, 643, 921, 922
BssMI	GATC	3 cut(s)	427, 820, 916
BssT1I	CCWWGG	1 cut(s)	634
Bst2UI	CCWGG	2 cut(s)	645, 923
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	296
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	688
BstDEI	CTNAG	6 cut(s)	11, 54, 656, 777, 810, 824
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	967
BstHHI	GCGC	2 cut(s)	453, 966
BstKTI	GATC	3 cut(s)	430, 823, 919
BstMAI	GTCTC	2 cut(s)	228, 319
BstMBI	GATC	3 cut(s)	427, 820, 916
BstMWI	GCNNNNNNNGC	1 cut(s)	715
BstNI	CCWGG	2 cut(s)	645, 923
BstNSI	RCATGY	2 cut(s)	690, 800
BstSCI	CCNGG	3 cut(s)	273, 643, 921
BstSFI	CTRYAG	4 cut(s)	119, 330, 707, 729
BstV2I	GAAGAC	1 cut(s)	1016
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
Bsu36I	CCTNAGG	2 cut(s)	11, 656
BtgI	CCRYGG	1 cut(s)	634
BtrI	CACGTC	1 cut(s)	548
BtsCI	GGATG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	339
BveI	ACCTGC	2 cut(s)	136, 736
Cac8I	GCNNGC	1 cut(s)	688
CaiI	CAGNNNCTG	2 cut(s)	737, 857
CfoI	GCGC	2 cut(s)	453, 966
Cfr13I	GGNCC	3 cut(s)	103, 355, 938
Csp6I	GTAC	2 cut(s)	7, 868
CviAII	CATG	5 cut(s)	221, 250, 635, 687, 797
CviQI	GTAC	2 cut(s)	7, 868
DdeI	CTNAG	6 cut(s)	11, 54, 656, 777, 810, 824
DpnI	GATC	3 cut(s)	429, 822, 918
DpnII	GATC	3 cut(s)	427, 820, 916
DraI	TTTAAA	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	634
Eco31I	GGTCTC	1 cut(s)	319
Eco32I	GATATC	1 cut(s)	807
Eco47I	GGWCC	3 cut(s)	103, 355, 938
Eco47III	AGCGCT	1 cut(s)	965
Eco57I	CTGAAG	7 cut(s)	59, 182, 197, 341, 588, 702, 879
Eco81I	CCTNAGG	2 cut(s)	11, 656
EcoO109I	RGGNCCY	1 cut(s)	938
EcoRI	GAATTC	3 cut(s)	127, 172, 178
EcoRII	CCWGG	2 cut(s)	643, 921
EcoRV	GATATC	1 cut(s)	807
EcoT14I	CCWWGG	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	5 cut(s)	224, 253, 638, 690, 800
FalI	AAGNNNNNCTT	4 cut(s)	534, 566, 735, 767
FatI	CATG	5 cut(s)	220, 249, 634, 686, 796
FokI	GGATG	1 cut(s)	386
GlaI	GCGC	2 cut(s)	452, 965
GsaI	CCCAGC	2 cut(s)	889, 893
GsuI	CTGGAG	5 cut(s)	216, 516, 594, 975, 988
HaeII	RGCGCY	1 cut(s)	967
HapII	CCGG	1 cut(s)	275
HhaI	GCGC	2 cut(s)	453, 966
Hin1II	CATG	5 cut(s)	224, 253, 638, 690, 800
Hin6I	GCGC	2 cut(s)	451, 964
HinP1I	GCGC	2 cut(s)	451, 964
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	2 cut(s)	125, 160
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	9 cut(s)	103, 162, 184, 259, 682, 811, 859, 916, 979
Hpy188III	TCNNGA	6 cut(s)	358, 371, 533, 566, 611, 992
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	839
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	2 cut(s)	295, 547
HpyCH4V	TGCA	8 cut(s)	121, 145, 367, 522, 578, 709, 731, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	715
HpyF3I	CTNAG	6 cut(s)	11, 54, 656, 777, 810, 824
HpySE526I	ACGT	2 cut(s)	295, 547
Hsp92II	CATG	5 cut(s)	224, 253, 638, 690, 800
HspAI	GCGC	2 cut(s)	451, 964
Kzo9I	GATC	3 cut(s)	427, 820, 916
LmnI	GCTCC	3 cut(s)	81, 340, 644
LweI	GCATC	2 cut(s)	376, 745
MaeII	ACGT	2 cut(s)	295, 547
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	429, 822, 918
MboI	GATC	3 cut(s)	427, 820, 916
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	1 cut(s)	820
MlyI	GAGTC	1 cut(s)	743
MseI	TTAA	5 cut(s)	306, 468, 515, 899, 959
MslI	CAYNNNNRTG	2 cut(s)	248, 372
MspA1I	CMGCKG	1 cut(s)	889
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	3 cut(s)	275, 645, 923
MunI	CAATTG	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	1036
MvaI	CCWGG	2 cut(s)	645, 923
MwoI	GCNNNNNNNGC	1 cut(s)	715
NciI	CCSGG	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	634
NdeII	GATC	3 cut(s)	427, 820, 916
NlaIII	CATG	5 cut(s)	224, 253, 638, 690, 800
NlaIV	GGNNCC	5 cut(s)	105, 564, 640, 895, 939
NmeAIII	GCCGAG	1 cut(s)	479
NspI	RCATGY	2 cut(s)	690, 800
NspV	TTCGAA	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	690
PaqCI	CACCTGC	1 cut(s)	136
PasI	CCCWGGG	1 cut(s)	922
PcsI	WCGNNNNNNNCGW	1 cut(s)	553
PctI	GAATGC	1 cut(s)	1036
PfeI	GAWTC	9 cut(s)	157, 185, 527, 605, 665, 701, 854, 874, 974
PflFI	GACNNNGTC	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	273
PleI	GAGTC	1 cut(s)	742
PpsI	GAGTC	1 cut(s)	742
Ppu21I	YACGTR	1 cut(s)	296
PpuMI	RGGWCCY	1 cut(s)	938
Psp5II	RGGWCCY	1 cut(s)	938
Psp6I	CCWGG	2 cut(s)	643, 921
PspFI	CCCAGC	2 cut(s)	885, 889
PspGI	CCWGG	2 cut(s)	643, 921
PspN4I	GGNNCC	5 cut(s)	105, 564, 640, 895, 939
PspPI	GGNCC	3 cut(s)	103, 355, 938
PspPPI	RGGWCCY	1 cut(s)	938
PstI	CTGCAG	3 cut(s)	123, 711, 733
PstNI	CAGNNNCTG	2 cut(s)	737, 857
PsuI	RGATCY	1 cut(s)	820
PsyI	GACNNNGTC	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	889
RsaI	GTAC	2 cut(s)	8, 869
RsaNI	GTAC	2 cut(s)	7, 868
RseI	CAYNNNNRTG	2 cut(s)	248, 372
SaqAI	TTAA	5 cut(s)	306, 468, 515, 899, 959
Sau3AI	GATC	3 cut(s)	427, 820, 916
Sau96I	GGNCC	3 cut(s)	103, 355, 938
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	3 cut(s)	275, 645, 923
SfaNI	GCATC	2 cut(s)	376, 745
SfcI	CTRYAG	4 cut(s)	119, 330, 707, 729
SfuI	TTCGAA	1 cut(s)	176
SinI	GGWCC	3 cut(s)	103, 355, 938
SmiMI	CAYNNNNRTG	2 cut(s)	248, 372
SphI	GCATGC	1 cut(s)	690
StyD4I	CCNGG	3 cut(s)	273, 643, 921
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	2 cut(s)	298, 550
TaqI	TCGA	2 cut(s)	176, 430
TfiI	GAWTC	9 cut(s)	157, 185, 527, 605, 665, 701, 854, 874, 974
Tru1I	TTAA	5 cut(s)	306, 468, 515, 899, 959
Tru9I	TTAA	5 cut(s)	306, 468, 515, 899, 959
TscAI	CASTG	1 cut(s)	339
TspDTI	ATGAA	4 cut(s)	209, 453, 552, 630
TspRI	CASTG	1 cut(s)	339
Tth111I	GACNNNGTC	1 cut(s)	71
VpaK11BI	GGWCC	3 cut(s)	103, 355, 938
XapI	RAATTY	4 cut(s)	127, 172, 178, 1002
XceI	RCATGY	2 cut(s)	690, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.