Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005324

Physical Location & Seq

Genomic Coordinates Forward (+)

33921723 .. 33922993

Gene Structure 1271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013602

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGACAAAGACGTTCTTAGCCCAGAAACGAAAAAACAACGGCAATAAAACCCCACAGTGTTCAGGTTCATTTACATGGGTGGGGGAGTATACTAGCCCCATCCATAGTCCCACTCCACCACCACCTTCAGGTTCTTCTTCCTGCCCCCGGCCAACCAAACAGGAGTTTTCCAAACCTCTCCTTGAATTTCTCAAATCGATTGGGGTAGACACTAACAAGTTGCAACTGACCAAGTATGATATTGTTTCCATAATAACCAAGTATGCGGCTCAAAACAACCTTTCCCACCCAACAAACAAGAGGAAAATTGTATGCGATGAGAGGCTCTATTGCCTCTTCCGAAGGAAGTCCATTTCCCTCAACCAGATCCACGACTTGCTCGAGCAACATTACCTCCAAAATCAACAACCAGATTCGTCCTCATCTGATTATAAATCCAACTCTGACTCATCGGACTCTGACTCTCAAGAAGAAGATAGAGATTGCAAAGGAAAGAGAAAGAGAAATGCATTCGAAGCTGCTATACCTAAACGGATGAGCCGTTTTGTTGCCGTAGTTCCCGATAACATGAAGCTGGTGTATTTGAAGAAGTCTCTGGTTGAGAATCTTCTTCTCAAGCATGAGAAGGACCCTTATGTCTTTGAGCAAAAACTTGTTGGAAGCTTTGTTAGAATCAAATCAGGACGTGAGGACTACTTACAGAAGAATACTCACCAACTGTTCCAAGTCGCAGCCCTTGTAAACAAGCCTTCTAGATCTAATGGATCAGATGTTTCTCTTCAACTTTCAGGCACCGCCAAAGACGTTTCTATTGGCATGCTCTCAGATGACAAATTCTCCGAGGAAGAATGTGAAGAACTATGCCAAAGAATGGAAGGTGGCTTGGTCAATAGACCAACAGTAGTGGAGCTCCAACACAAGGTCCACCTATTACATGAGGATATAACTAAGCATTGGATTATGACAGAGCTTGCATTGTTACAGAGACAGATTGATCTATTTAATGAAAAGGCTTGGCGCTGCCGGCTATTTGAGTGCTTGGAGAGAAGAGAATTCCTTGAAAATAAAGATGAGCACGAACGACTATTTCTCCAAGTTCCAGAGTTAACTGCAGCTCATGATGAAGATATGGAGGTACAAGTTGATCAGGCTAGGGATTCCTCTCCAACAAAAAAGACTGCATCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB

Protein Analysis

397

Amino Acids

45.46

Weight (kDa)

7.99

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	56 - 130	1.3e-13	SWIB/MDM2 domain
Plus-3	PF03126	189 - 292	5.5e-14	Plus-3 domain
NERD_plant	PF25980	313 - 362	3.7e-15	Plant NERD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08430 AT5G08430 AT5G23480 AT5G23480 AT5G23480 AT5G23480 AT5G23480 AT5G23480
fragaria_vesca	FvH4_1g25810 FvH4_1g25810 FvH4_1g25810
malus_domestica	MD15G1140400.v1.1
prunus_persica	Prupe.4G286800_v2.0.a1 Prupe.4G286800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484911 RchiOBHm_Chr3g0484921
rosa_laevigata	RLG00000013602 RLG00000023186
rosa_multiflora	Rmu_sc0002231.1_g000024 Rmu_sc0005946.1_g000003 Rmu_sc0005946.1_g000004
rosa_roxburghii	Rroxscaffold_6G00397360
rosa_rugosa	Rorug03G0214200
rosa_samantha	Rh3AG264600 Rh3BG300100 Rh3CG297800 Rh3DG293900 Rh6CG195000
rosa_wichuraiana	Rw3G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AasI	GACNNNNNNGTC	1 cut(s)	635
AccB1I	GGYRCC	1 cut(s)	791
AccB7I	CCANNNNNTGG	1 cut(s)	871
AccI	GTMKAC	2 cut(s)	89, 207
AciI	CCGC	2 cut(s)	266, 795
AclWI	GGATC	2 cut(s)	361, 772
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	3 cut(s)	185, 833, 1052
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	1137
AfiI	CCNNNNNNNGG	4 cut(s)	128, 147, 871, 919
AgsI	TTSAA	4 cut(s)	185, 586, 782, 1061
AjiI	CACGTC	1 cut(s)	686
AluBI	AGCT	6 cut(s)	518, 574, 663, 910, 970, 1115
AluI	AGCT	6 cut(s)	518, 574, 663, 910, 970, 1115
Alw21I	GWGCWC	2 cut(s)	912, 1077
Alw26I	GTCTC	2 cut(s)	597, 979
AlwI	GGATC	2 cut(s)	361, 772
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	4 cut(s)	518, 731, 1020, 1112
ApoI	RAATTY	3 cut(s)	185, 833, 1052
AspLEI	GCGC	1 cut(s)	1020
AspS9I	GGNCC	2 cut(s)	628, 922
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	704
AsuII	TTCGAA	1 cut(s)	513
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	628, 922
BanI	GGYRCC	1 cut(s)	791
BanII	GRGCYC	1 cut(s)	912
BarI	GAAGNNNNNNTAC	2 cut(s)	507, 539
Bbv12I	GWGCWC	2 cut(s)	912, 1077
BbvI	GCAGC	4 cut(s)	505, 743, 1007, 1124
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	3 cut(s)	55, 525, 536
BclI	TGATCA	1 cut(s)	1144
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	597, 979
BfaI	CTAG	3 cut(s)	93, 753, 1152
BfmI	CTRYAG	1 cut(s)	1110
BfoI	RGCGCY	1 cut(s)	1021
BglII	AGATCT	1 cut(s)	755
BisI	GCNGC	5 cut(s)	267, 519, 732, 1021, 1113
BlsI	GCNGC	5 cut(s)	268, 520, 733, 1022, 1114
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	2 cut(s)	628, 922
BmeT110I	CYCGRG	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	686
BmgT120I	GGNCC	2 cut(s)	628, 922
BmiI	GGNNCC	2 cut(s)	630, 793
BmrFI	CCNGG	1 cut(s)	148
Bpu14I	TTCGAA	1 cut(s)	513
BpuEI	CTTGAG	2 cut(s)	450, 599
BpuMI	CCSGG	1 cut(s)	148
Bsa29I	ATCGAT	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	146, 840
BsaXI	ACNNNNNCTCC	6 cut(s)	378, 408, 821, 851, 1074, 1104
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 147, 871, 919
Bse118I	RCCGGY	1 cut(s)	1023
BseCI	ATCGAT	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	146, 840
BseGI	GGATG	2 cut(s)	99, 540
BseLI	CCNNNNNNNGG	4 cut(s)	128, 147, 871, 919
BseMII	CTCAG	1 cut(s)	837
BseXI	GCAGC	4 cut(s)	505, 743, 1007, 1124
BshFI	GGCC	1 cut(s)	151
BshNI	GGYRCC	1 cut(s)	791
BshVI	ATCGAT	1 cut(s)	197
BsiHKAI	GWGCWC	2 cut(s)	912, 1077
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	148, 1024
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	4 cut(s)	128, 147, 871, 919
BsmAI	GTCTC	2 cut(s)	597, 979
BsmFI	GGGAC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	380
Bsp119I	TTCGAA	1 cut(s)	513
Bsp1286I	GDGCHC	2 cut(s)	912, 1077
Bsp143I	GATC	5 cut(s)	366, 755, 764, 994, 1144
BspACI	CCGC	2 cut(s)	266, 795
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	836
BspDI	ATCGAT	1 cut(s)	197
BspHI	TCATGA	1 cut(s)	1117
BspLI	GGNNCC	2 cut(s)	630, 793
BspMAI	CTGCAG	1 cut(s)	1114
BspPI	GGATC	2 cut(s)	361, 772
BspT104I	TTCGAA	1 cut(s)	513
BspT107I	GGYRCC	1 cut(s)	791
BsrFI	RCCGGY	1 cut(s)	1023
BssAI	RCCGGY	1 cut(s)	1023
BssECI	CCNNGG	2 cut(s)	146, 840
BssMI	GATC	5 cut(s)	366, 755, 764, 994, 1144
BssNAI	GTATAC	1 cut(s)	90
Bst1107I	GTATAC	1 cut(s)	90
Bst4CI	ACNGT	3 cut(s)	57, 720, 901
Bst6I	CTCTTC	3 cut(s)	341, 783, 1042
BstBI	TTCGAA	1 cut(s)	513
BstC8I	GCNNGC	3 cut(s)	818, 972, 1025
BstDEI	CTNAG	4 cut(s)	16, 823, 948, 1188
BstF5I	GGATG	2 cut(s)	99, 540
BstH2I	RGCGCY	1 cut(s)	1021
BstHHI	GCGC	1 cut(s)	1020
BstKTI	GATC	5 cut(s)	369, 758, 767, 997, 1147
BstMAI	GTCTC	2 cut(s)	597, 979
BstMBI	GATC	5 cut(s)	366, 755, 764, 994, 1144
BstMWI	GCNNNNNNNGC	2 cut(s)	515, 1024
BstNSI	RCATGY	1 cut(s)	820
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	1110
BstV1I	GCAGC	4 cut(s)	505, 743, 1007, 1124
BstX2I	RGATCY	2 cut(s)	366, 755
BstYI	RGATCY	2 cut(s)	366, 755
BstZ17I	GTATAC	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	151
BsuTUI	ATCGAT	1 cut(s)	197
BtgZI	GCGATG	1 cut(s)	330
BtrI	CACGTC	1 cut(s)	686
BtsCI	GGATG	2 cut(s)	99, 540
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	3 cut(s)	818, 972, 1025
CciI	TCATGA	1 cut(s)	1117
CfoI	GCGC	1 cut(s)	1020
Cfr10I	RCCGGY	1 cut(s)	1023
Cfr13I	GGNCC	2 cut(s)	628, 922
ClaI	ATCGAT	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	1136
CspCI	CAANNNNNGTGG	2 cut(s)	885, 920
CviAII	CATG	6 cut(s)	75, 568, 620, 817, 935, 1118
CviQI	GTAC	1 cut(s)	1136
DdeI	CTNAG	4 cut(s)	16, 823, 948, 1188
DpnI	GATC	5 cut(s)	368, 757, 766, 996, 1146
DpnII	GATC	5 cut(s)	366, 755, 764, 994, 1144
DrdI	GACNNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	635
EaeI	YGGCCR	1 cut(s)	149
Eam1104I	CTCTTC	3 cut(s)	341, 783, 1042
EarI	CTCTTC	3 cut(s)	341, 783, 1042
Ecl136II	GAGCTC	1 cut(s)	910
Eco24I	GRGCYC	1 cut(s)	912
Eco47I	GGWCC	2 cut(s)	628, 922
Eco53kI	GAGCTC	1 cut(s)	910
Eco57I	CTGAAG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	910
EcoO109I	RGGNCCY	1 cut(s)	628
EcoRI	GAATTC	1 cut(s)	1052
EcoT22I	ATGCAT	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	912
FaeI	CATG	6 cut(s)	78, 571, 623, 820, 938, 1121
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	6 cut(s)	74, 567, 619, 816, 934, 1117
FbaI	TGATCA	1 cut(s)	1144
FblI	GTMKAC	2 cut(s)	89, 207
Fnu4HI	GCNGC	5 cut(s)	267, 519, 732, 1021, 1113
FokI	GGATG	2 cut(s)	86, 547
FriOI	GRGCYC	1 cut(s)	912
Fsp4HI	GCNGC	5 cut(s)	267, 519, 732, 1021, 1113
FspBI	CTAG	3 cut(s)	93, 753, 1152
GlaI	GCGC	1 cut(s)	1019
GluI	GCNGC	5 cut(s)	267, 519, 732, 1021, 1113
HaeII	RGCGCY	1 cut(s)	1021
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	2 cut(s)	148, 1024
HhaI	GCGC	1 cut(s)	1020
Hin1II	CATG	6 cut(s)	78, 571, 623, 820, 938, 1121
Hin6I	GCGC	1 cut(s)	1018
HinP1I	GCGC	1 cut(s)	1018
HincII	GTYRAC	1 cut(s)	1107
HindII	GTYRAC	1 cut(s)	1107
HindIII	AAGCTT	1 cut(s)	661
HinfI	GANTC	7 cut(s)	413, 446, 455, 461, 604, 672, 1157
HpaI	GTTAAC	1 cut(s)	1107
HpaII	CCGG	2 cut(s)	148, 1024
HphI	GGTGA	1 cut(s)	704
Hpy166II	GTNNAC	5 cut(s)	90, 208, 742, 925, 1107
Hpy188I	TCNGA	8 cut(s)	341, 427, 445, 454, 460, 769, 826, 841
Hpy188III	TCNNGA	6 cut(s)	467, 560, 681, 753, 1100, 1118
Hpy8I	GTNNAC	5 cut(s)	90, 208, 742, 925, 1107
HpyAV	CCTTC	5 cut(s)	135, 336, 619, 759, 869
HpyCH4III	ACNGT	3 cut(s)	57, 720, 901
HpyCH4IV	ACGT	3 cut(s)	11, 685, 804
HpyCH4V	TGCA	6 cut(s)	223, 486, 509, 974, 1112, 1181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	515, 1024
HpyF3I	CTNAG	4 cut(s)	16, 823, 948, 1188
HpySE526I	ACGT	3 cut(s)	11, 685, 804
Hsp92II	CATG	6 cut(s)	78, 571, 623, 820, 938, 1121
HspAI	GCGC	1 cut(s)	1018
KroI	GCCGGC	1 cut(s)	1023
KroNI	GCCGGC	1 cut(s)	1025
Ksp22I	TGATCA	1 cut(s)	1144
KspAI	GTTAAC	1 cut(s)	1107
Kzo9I	GATC	5 cut(s)	366, 755, 764, 994, 1144
LmnI	GCTCC	2 cut(s)	907, 915
Lsp1109I	GCAGC	4 cut(s)	505, 743, 1007, 1124
MaeI	CTAG	3 cut(s)	93, 753, 1152
MaeII	ACGT	3 cut(s)	11, 685, 804
MaeIII	GTNAC	1 cut(s)	978
MalI	GATC	5 cut(s)	368, 757, 766, 996, 1146
MboI	GATC	5 cut(s)	366, 755, 764, 994, 1144
MflI	RGATCY	2 cut(s)	366, 755
MhlI	GDGCHC	2 cut(s)	912, 1077
MluCI	AATT	4 cut(s)	185, 306, 833, 1052
MlyI	GAGTC	3 cut(s)	440, 449, 455
MmeI	TCCRAC	4 cut(s)	462, 637, 937, 1190
Mph1103I	ATGCAT	1 cut(s)	511
MroNI	GCCGGC	1 cut(s)	1023
MseI	TTAA	2 cut(s)	1002, 1106
MslI	CAYNNNNRTG	1 cut(s)	73
MspI	CCGG	2 cut(s)	148, 1024
MspR9I	CCNGG	1 cut(s)	148
Mva1269I	GAATGC	1 cut(s)	509
MwoI	GCNNNNNNNGC	2 cut(s)	515, 1024
NaeI	GCCGGC	1 cut(s)	1025
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	5 cut(s)	366, 755, 764, 994, 1144
NgoMIV	GCCGGC	1 cut(s)	1023
NlaIII	CATG	6 cut(s)	78, 571, 623, 820, 938, 1121
NlaIV	GGNNCC	2 cut(s)	630, 793
NsiI	ATGCAT	1 cut(s)	511
NspI	RCATGY	1 cut(s)	820
NspV	TTCGAA	1 cut(s)	513
PaeI	GCATGC	1 cut(s)	820
PaeR7I	CTCGAG	1 cut(s)	380
PagI	TCATGA	1 cut(s)	1117
PcsI	WCGNNNNNNNCGW	2 cut(s)	378, 538
PctI	GAATGC	1 cut(s)	509
PdiI	GCCGGC	1 cut(s)	1025
PfeI	GAWTC	4 cut(s)	413, 604, 672, 1157
PflMI	CCANNNNNTGG	1 cut(s)	871
PkrI	GCNGC	5 cut(s)	268, 520, 733, 1022, 1114
PleI	GAGTC	3 cut(s)	440, 449, 455
PpsI	GAGTC	3 cut(s)	440, 449, 455
PpuMI	RGGWCCY	1 cut(s)	628
PsiI	TTATAA	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	912
Psp5II	RGGWCCY	1 cut(s)	628
PspN4I	GGNNCC	2 cut(s)	630, 793
PspPI	GGNCC	2 cut(s)	628, 922
PspPPI	RGGWCCY	1 cut(s)	628
PspXI	VCTCGAGB	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	1114
PsuI	RGATCY	2 cut(s)	366, 755
RsaI	GTAC	1 cut(s)	1137
RsaNI	GTAC	1 cut(s)	1136
RseI	CAYNNNNRTG	1 cut(s)	73
SacI	GAGCTC	1 cut(s)	912
SaqAI	TTAA	2 cut(s)	1002, 1106
SatI	GCNGC	5 cut(s)	267, 519, 732, 1021, 1113
Sau3AI	GATC	5 cut(s)	366, 755, 764, 994, 1144
Sau96I	GGNCC	2 cut(s)	628, 922
SchI	GAGTC	3 cut(s)	440, 449, 455
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	2 cut(s)	912, 1077
SfcI	CTRYAG	1 cut(s)	1110
Sfr274I	CTCGAG	1 cut(s)	380
SfuI	TTCGAA	1 cut(s)	513
SinI	GGWCC	2 cut(s)	628, 922
SlaI	CTCGAG	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	73
SmlI	CTYRAG	3 cut(s)	380, 465, 614
SmoI	CTYRAG	3 cut(s)	380, 465, 614
SphI	GCATGC	1 cut(s)	820
Sse9I	AATT	4 cut(s)	185, 306, 833, 1052
SsiI	CCGC	2 cut(s)	266, 795
SspMI	CTAG	3 cut(s)	93, 753, 1152
SstI	GAGCTC	1 cut(s)	912
StyD4I	CCNGG	1 cut(s)	146
TaaI	ACNGT	3 cut(s)	57, 720, 901
TaiI	ACGT	3 cut(s)	14, 688, 807
TaqI	TCGA	3 cut(s)	197, 381, 513
TasI	AATT	4 cut(s)	185, 306, 833, 1052
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	4 cut(s)	413, 604, 672, 1157
Tru1I	TTAA	2 cut(s)	1002, 1106
Tru9I	TTAA	2 cut(s)	1002, 1106
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	4 cut(s)	518, 731, 1020, 1112
TspDTI	ATGAA	4 cut(s)	57, 584, 1020, 1137
TspGWI	ACGGA	1 cut(s)	547
TspRI	CASTG	1 cut(s)	62
Van91I	CCANNNNNTGG	1 cut(s)	871
VpaK11BI	GGWCC	2 cut(s)	628, 922
XapI	RAATTY	3 cut(s)	185, 833, 1052
XbaI	TCTAGA	1 cut(s)	752
XceI	RCATGY	1 cut(s)	820
XhoI	CTCGAG	1 cut(s)	380
XmiI	GTMKAC	2 cut(s)	89, 207
XspI	CTAG	3 cut(s)	93, 753, 1152
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.