Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005324

Physical Location & Seq

Genomic Coordinates Reverse (-)

32274624 .. 32276724

Gene Structure 2101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG195000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGCCGTTTTGTTGCCATAGTTCCCGATAACATGAAGCTGGTGTATTTGAAGAAGTCTCTGGTTGAGAATCTTCTTCTCAAGCATGAGAAAGACCCTTATGTCTTTGAGAAAAAAGTTGTTGGAAGCTTTGTTAGAATCAAATCAGGACGTGAGGACTACTTACAGAAGAATACTCACCAACTGCTCCAAGTCGCAGCCCTTGTAAACAAGCCTTCGAGATCTGATGGATCAGATATTTCTCTCCAACTTTCAGGCACCGCCAAAGACGTTTCTATTGGCATGCTCTCAGATGACAAATTCTCCGAGGAAGAATGTGAAGAACTATGCCAAAGAATGGAAGGTGGCTTGGTCAATAGACCAACAGTAGTGGAGCTCCAACACAAGGTCCACCTATTACATGAGGATATAACTAAGCATTGGATTACGACAGAGCTTGCATTGTTACAGAGACAGATTGATCTATTTAATGAAAAGGGTTGGCGCTGCCGGCTATTTGAGTGCTTGGAGAGAAGAGAATTCCTTGAAAATAAAGATGAGCAGGAACGACTATTGCTCCAAGTTCCAGAATTAACTGCAGCTAATGATGAAGATATGAAGGGGCACCAAAGCGAACGTGGTCGATCTCCAGTGCGTTCGCACCTTGCTCGTAAAAAGCGATCGAGGCAGAGATCAAAGAGGACTATTATGGACCCTGTACTGGTGCCGAATCACAACAACATGATGGAGAATCAGTTGGTGAAAGAATTGGAGGTACATGAGGCTTTGGAATCTGTTCCCTTTATTCGGGCAGAGGATGCTTCGGTGATTGCTCCCATTGTCTCAGGAGACTCTGTGATTGCACCGGGAGAGGTGCAGGCGGGCCCAGTTTTGGCTCCAACTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB

Protein Analysis

295

Amino Acids

33.6

Weight (kDa)

6.24

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plus-3	PF03126	11 - 114	1.6e-14	Plus-3 domain
NERD_plant	PF25980	135 - 184	5.6e-18	Plant NERD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08430 AT5G08430 AT5G23480 AT5G23480 AT5G23480 AT5G23480 AT5G23480 AT5G23480
fragaria_vesca	FvH4_1g25810 FvH4_1g25810 FvH4_1g25810
malus_domestica	MD15G1140400.v1.1
prunus_persica	Prupe.4G286800_v2.0.a1 Prupe.4G286800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484911 RchiOBHm_Chr3g0484921
rosa_laevigata	RLG00000013602 RLG00000023186
rosa_multiflora	Rmu_sc0002231.1_g000024 Rmu_sc0005946.1_g000003 Rmu_sc0005946.1_g000004
rosa_roxburghii	Rroxscaffold_6G00397360
rosa_rugosa	Rorug03G0214200
rosa_samantha	Rh3AG264600 Rh3BG300100 Rh3CG297800 Rh3DG293900 Rh6CG195000
rosa_wichuraiana	Rw3G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AccB1I	GGYRCC	3 cut(s)	257, 603, 703
AccB7I	CCANNNNNTGG	1 cut(s)	337
AciI	CCGC	2 cut(s)	261, 860
AclWI	GGATC	1 cut(s)	238
AcsI	RAATTY	2 cut(s)	299, 518
AfaI	GTAC	2 cut(s)	699, 756
AfiI	CCNNNNNNNGG	5 cut(s)	337, 385, 700, 786, 871
AgsI	TTSAA	2 cut(s)	52, 527
AhlI	ACTAGT	1 cut(s)	881
AjiI	CACGTC	1 cut(s)	152
AluBI	AGCT	5 cut(s)	40, 129, 376, 436, 581
AluI	AGCT	5 cut(s)	40, 129, 376, 436, 581
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	4 cut(s)	63, 445, 822, 826
AlwI	GGATC	1 cut(s)	238
AoxI	GGCC	2 cut(s)	4, 862
ApaI	GGGCCC	1 cut(s)	866
ApeKI	GCWGC	3 cut(s)	197, 486, 578
ApoI	RAATTY	2 cut(s)	299, 518
Asp700I	GAANNNNTTC	1 cut(s)	774
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	5 cut(s)	4, 388, 691, 862, 863
AsuC2I	CCSGG	1 cut(s)	846
AsuHPI	GGTGA	3 cut(s)	170, 751, 817
AvaII	GGWCC	2 cut(s)	388, 691
BaeGI	GKGCMC	2 cut(s)	606, 866
BanI	GGYRCC	3 cut(s)	257, 603, 703
BanII	GRGCYC	2 cut(s)	378, 866
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	3 cut(s)	209, 473, 590
BccI	CCATC	2 cut(s)	221, 718
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BcnI	CCSGG	1 cut(s)	846
BcoDI	GTCTC	4 cut(s)	63, 445, 822, 826
BcuI	ACTAGT	1 cut(s)	881
BfaI	CTAG	1 cut(s)	882
BfmI	CTRYAG	1 cut(s)	576
BfoI	RGCGCY	1 cut(s)	487
BglII	AGATCT	1 cut(s)	221
BisI	GCNGC	3 cut(s)	198, 487, 579
BlsI	GCNGC	3 cut(s)	199, 488, 580
Bme1390I	CCNGG	1 cut(s)	846
Bme18I	GGWCC	2 cut(s)	388, 691
BmgBI	CACGTC	1 cut(s)	152
BmgT120I	GGNCC	5 cut(s)	4, 388, 691, 862, 863
BmiI	GGNNCC	6 cut(s)	259, 605, 693, 705, 864, 876
BmrFI	CCNGG	1 cut(s)	846
BmrI	ACTGGG	1 cut(s)	860
BmsI	GCATC	1 cut(s)	787
BmuI	ACTGGG	1 cut(s)	860
BpmI	CTGGAG	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	846
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	8 cut(s)	287, 317, 540, 570, 719, 749, 819, 849
Bsc4I	CCNNNNNNNGG	5 cut(s)	337, 385, 700, 786, 871
Bse118I	RCCGGY	1 cut(s)	489
Bse1I	ACTGG	3 cut(s)	629, 705, 866
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	802
BseLI	CCNNNNNNNGG	5 cut(s)	337, 385, 700, 786, 871
BseMII	CTCAG	2 cut(s)	303, 837
BseNI	ACTGG	3 cut(s)	629, 705, 866
BseSI	GKGCMC	2 cut(s)	606, 866
BseXI	GCAGC	3 cut(s)	209, 473, 590
BsgI	GTGCAG	1 cut(s)	875
Bsh1285I	CGRYCG	1 cut(s)	662
BshFI	GGCC	2 cut(s)	6, 864
BshNI	GGYRCC	3 cut(s)	257, 603, 703
BsiEI	CGRYCG	1 cut(s)	662
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	2 cut(s)	490, 845
BslI	CCNNNNNNNGG	5 cut(s)	337, 385, 700, 786, 871
BsmAI	GTCTC	4 cut(s)	63, 445, 822, 826
BsnI	GGCC	2 cut(s)	6, 864
Bsp120I	GGGCCC	1 cut(s)	862
Bsp1286I	GDGCHC	3 cut(s)	378, 606, 866
Bsp143I	GATC	6 cut(s)	221, 230, 460, 623, 659, 671
BspACI	CCGC	2 cut(s)	261, 860
BspANI	GGCC	2 cut(s)	6, 864
BspCNI	CTCAG	2 cut(s)	302, 836
BspLI	GGNNCC	6 cut(s)	259, 605, 693, 705, 864, 876
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	1 cut(s)	238
BspT107I	GGYRCC	3 cut(s)	257, 603, 703
BsrFI	RCCGGY	1 cut(s)	489
BsrI	ACTGG	3 cut(s)	629, 705, 866
BssAI	RCCGGY	1 cut(s)	489
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	6 cut(s)	221, 230, 460, 623, 659, 671
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	508
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstC8I	GCNNGC	5 cut(s)	284, 438, 491, 858, 862
BstDEI	CTNAG	3 cut(s)	289, 414, 823
BstF5I	GGATG	1 cut(s)	802
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	6 cut(s)	224, 233, 463, 626, 662, 674
BstMAI	GTCTC	4 cut(s)	63, 445, 822, 826
BstMBI	GATC	6 cut(s)	221, 230, 460, 623, 659, 671
BstMCI	CGRYCG	1 cut(s)	662
BstMWI	GCNNNNNNNGC	3 cut(s)	490, 664, 797
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	844
BstSFI	CTRYAG	1 cut(s)	576
BstSLI	GKGCMC	2 cut(s)	606, 866
BstV1I	GCAGC	3 cut(s)	209, 473, 590
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	6, 864
BtrI	CACGTC	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	802
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	5 cut(s)	284, 438, 491, 858, 862
CfoI	GCGC	1 cut(s)	486
Cfr10I	RCCGGY	1 cut(s)	489
Cfr13I	GGNCC	5 cut(s)	4, 388, 691, 862, 863
Csp6I	GTAC	2 cut(s)	698, 755
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	6 cut(s)	34, 86, 283, 401, 721, 758
CviQI	GTAC	2 cut(s)	698, 755
DdeI	CTNAG	3 cut(s)	289, 414, 823
DpnI	GATC	6 cut(s)	223, 232, 462, 625, 661, 673
DpnII	GATC	6 cut(s)	221, 230, 460, 623, 659, 671
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
Ecl136II	GAGCTC	1 cut(s)	376
Eco24I	GRGCYC	2 cut(s)	378, 866
Eco47I	GGWCC	2 cut(s)	388, 691
Eco53kI	GAGCTC	1 cut(s)	376
EcoICRI	GAGCTC	1 cut(s)	376
EcoRI	GAATTC	1 cut(s)	518
EcoT38I	GRGCYC	2 cut(s)	378, 866
FaeI	CATG	6 cut(s)	37, 89, 286, 404, 724, 761
FatI	CATG	6 cut(s)	33, 85, 282, 400, 720, 757
FauI	CCCGC	1 cut(s)	853
Fnu4HI	GCNGC	3 cut(s)	198, 487, 579
FokI	GGATG	1 cut(s)	809
FriOI	GRGCYC	2 cut(s)	378, 866
Fsp4HI	GCNGC	3 cut(s)	198, 487, 579
FspBI	CTAG	1 cut(s)	882
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	3 cut(s)	198, 487, 579
GsuI	CTGGAG	1 cut(s)	612
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	2 cut(s)	6, 864
HapII	CCGG	2 cut(s)	490, 845
HhaI	GCGC	1 cut(s)	486
Hin1II	CATG	6 cut(s)	37, 89, 286, 404, 724, 761
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	6 cut(s)	70, 138, 709, 730, 770, 830
HpaII	CCGG	2 cut(s)	490, 845
HphI	GGTGA	3 cut(s)	170, 751, 817
Hpy166II	GTNNAC	2 cut(s)	208, 391
Hpy188I	TCNGA	4 cut(s)	226, 235, 292, 307
Hpy188III	TCNNGA	5 cut(s)	26, 147, 219, 566, 825
Hpy8I	GTNNAC	2 cut(s)	208, 391
HpyAV	CCTTC	3 cut(s)	225, 335, 592
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	3 cut(s)	151, 270, 616
HpyCH4V	TGCA	4 cut(s)	440, 578, 842, 856
HpyF10VI	GCNNNNNNNGC	3 cut(s)	490, 664, 797
HpyF3I	CTNAG	3 cut(s)	289, 414, 823
HpySE526I	ACGT	3 cut(s)	151, 270, 616
Hsp92II	CATG	6 cut(s)	37, 89, 286, 404, 724, 761
HspAI	GCGC	1 cut(s)	484
KroI	GCCGGC	1 cut(s)	489
KroNI	GCCGGC	1 cut(s)	491
Kzo9I	GATC	6 cut(s)	221, 230, 460, 623, 659, 671
LmnI	GCTCC	6 cut(s)	192, 373, 381, 561, 817, 880
Lsp1109I	GCAGC	3 cut(s)	209, 473, 590
LweI	GCATC	1 cut(s)	787
MaeI	CTAG	1 cut(s)	882
MaeII	ACGT	3 cut(s)	151, 270, 616
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	6 cut(s)	223, 232, 462, 625, 661, 673
MboI	GATC	6 cut(s)	221, 230, 460, 623, 659, 671
MboII	GAAGA	8 cut(s)	64, 65, 68, 181, 323, 332, 525, 602
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	3 cut(s)	378, 606, 866
MluCI	AATT	4 cut(s)	299, 518, 569, 746
MlyI	GAGTC	1 cut(s)	824
MmeI	TCCRAC	3 cut(s)	103, 271, 403
MnlI	CCTC	9 cut(s)	148, 301, 397, 657, 672, 745, 754, 787, 844
MroNI	GCCGGC	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	774
MseI	TTAA	2 cut(s)	468, 572
MspI	CCGG	2 cut(s)	490, 845
MspR9I	CCNGG	1 cut(s)	846
MwoI	GCNNNNNNNGC	3 cut(s)	490, 664, 797
NaeI	GCCGGC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	846
NdeII	GATC	6 cut(s)	221, 230, 460, 623, 659, 671
NgoMIV	GCCGGC	1 cut(s)	489
NlaIII	CATG	6 cut(s)	37, 89, 286, 404, 724, 761
NlaIV	GGNNCC	6 cut(s)	259, 605, 693, 705, 864, 876
NspI	RCATGY	1 cut(s)	286
PaeI	GCATGC	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	655
PdiI	GCCGGC	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	774
PfeI	GAWTC	5 cut(s)	70, 138, 709, 730, 770
PflMI	CCANNNNNTGG	1 cut(s)	337
PkrI	GCNGC	3 cut(s)	199, 488, 580
Ple19I	CGATCG	1 cut(s)	662
PleI	GAGTC	1 cut(s)	824
PpsI	GAGTC	1 cut(s)	824
Psp124BI	GAGCTC	1 cut(s)	378
PspN4I	GGNNCC	6 cut(s)	259, 605, 693, 705, 864, 876
PspOMI	GGGCCC	1 cut(s)	862
PspPI	GGNCC	5 cut(s)	4, 388, 691, 862, 863
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	221
PvuI	CGATCG	1 cut(s)	662
RsaI	GTAC	2 cut(s)	699, 756
RsaNI	GTAC	2 cut(s)	698, 755
SacI	GAGCTC	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	468, 572
SatI	GCNGC	3 cut(s)	198, 487, 579
Sau3AI	GATC	6 cut(s)	221, 230, 460, 623, 659, 671
Sau96I	GGNCC	5 cut(s)	4, 388, 691, 862, 863
SchI	GAGTC	1 cut(s)	824
ScrFI	CCNGG	1 cut(s)	846
SduI	GDGCHC	3 cut(s)	378, 606, 866
SfaNI	GCATC	1 cut(s)	787
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	2 cut(s)	388, 691
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	881
SphI	GCATGC	1 cut(s)	286
Sse9I	AATT	4 cut(s)	299, 518, 569, 746
SsiI	CCGC	2 cut(s)	261, 860
SspMI	CTAG	1 cut(s)	882
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	844
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	3 cut(s)	154, 273, 619
TaqI	TCGA	3 cut(s)	218, 622, 662
TasI	AATT	4 cut(s)	299, 518, 569, 746
TatI	WGTACW	1 cut(s)	697
TfiI	GAWTC	5 cut(s)	70, 138, 709, 730, 770
Tru1I	TTAA	2 cut(s)	468, 572
Tru9I	TTAA	2 cut(s)	468, 572
TscAI	CASTG	1 cut(s)	636
TseI	GCWGC	3 cut(s)	197, 486, 578
TspDTI	ATGAA	4 cut(s)	50, 486, 603, 611
TspRI	CASTG	1 cut(s)	636
Van91I	CCANNNNNTGG	1 cut(s)	337
VpaK11BI	GGWCC	2 cut(s)	388, 691
XapI	RAATTY	2 cut(s)	299, 518
XceI	RCATGY	1 cut(s)	286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	774
XspI	CTAG	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.