Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005324

Physical Location & Seq

Genomic Coordinates Reverse (-)

31405816 .. 31409914

Gene Structure 4099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44960

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGGCTCTTTCACTTGGGTTGGGGAGTACAACGCCGCCGTCACCGCCACCGCCGATGTCGACGCCGCCGCCGCAGCTGCTGCTGCTCCGACGAGGAGGAGCAAGAGGCTGCACCGCCCCAAGAAGTTTGAGTTTCTCAGCTGGGGCTCGAGGCCGCTGATTGAATTTCTCGAGTCGATTGGGAAGGACACGACGAAGCAGATCTCCCAATACGACGTCGCTACGATTATCACCGACTACGTCAACCACCGCAGGCTTCTCCACCCGACGAAGAGGAAGAGGATCGTCTGCGACGACGGGCTTCATTCTCTGTTCGGCAGGAAGACCATTGCTCGGATCAAGATCTACGATTTGCTCCAGCCGCATTTCGCTGAGAATCTCGAGGACGATTCCGATGATTCGTCGGATGAGTCCGACGACGACGGTTTGGACGAGGAGGACGAGGATAAGCAGCGGCGGCAGCAGCAGCAGCAGAGGAAGAAGCAGCAGAAGAGGAGAGCCGCCTCGGCTCTGCATGCGCCTCCTCCGGTTCCGAAAAGCTGCTACGCCGCCGTGATTCCGGAGAATTTGAAGCTGGTGTACCTGAGGAGGTCGGTGGTGGAAGCTCTGCTGAAGCAGGGCGAGGCTCAGGTGTTTGAGGACAAAGTCGTGGGGAGCTTTGTGAGGACGAAATCGGACCCCAATGACTATCTGCAGAAGAATTCTCACCAGCTAATGCAGGTGAAGGCGATTCTGAAGAAGCCGGAGCCGAATTCGGAATCGTCTGCTGGAGGTGGAGTTCTTCTTCAGCTTCATGGGGCTGTTAGAGACTTCTCCGTTTCCATGCTCTCTGATGATAACTTCTTCCCGGAAGAATGTGAGGATTTACGTGAAAGAGTTAAAGGTGGTTTGCTGAAGAGACCTACAGTGGTGGAGCTTCAACAAAAGGTCCAGATCTTGCATCTGGATGTAACAAAGCATTGGCTTGTGAGAGAACTTCAATACTTACAGAACTCAATTGATCGAGCGAATGAAAAGGGATTGCGCCGAGAATATCCTTTCAAATTATTTACAGCTTATATGCCATACTTGAATATGTTGAGTAATTTAATTTGCATAGAAGTATTGCCCAGTCAATTATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB

Protein Analysis

374

Amino Acids

42.66

Weight (kDa)

8.19

Isoelectric Point (pI)

59.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	51 - 123	1.4e-09	SWIB/MDM2 domain
Plus-3	PF03126	189 - 293	2.5e-13	Plus-3 domain
NERD_plant	PF25980	316 - 362	5.5e-15	Plant NERD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08430 AT5G08430 AT5G23480 AT5G23480 AT5G23480 AT5G23480 AT5G23480 AT5G23480
fragaria_vesca	FvH4_1g25810 FvH4_1g25810 FvH4_1g25810
malus_domestica	MD15G1140400.v1.1
prunus_persica	Prupe.4G286800_v2.0.a1 Prupe.4G286800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484911 RchiOBHm_Chr3g0484921
rosa_laevigata	RLG00000013602 RLG00000023186
rosa_multiflora	Rmu_sc0002231.1_g000024 Rmu_sc0005946.1_g000003 Rmu_sc0005946.1_g000004
rosa_roxburghii	Rroxscaffold_6G00397360
rosa_rugosa	Rorug03G0214200
rosa_samantha	Rh3AG264600 Rh3BG300100 Rh3CG297800 Rh3DG293900 Rh6CG195000
rosa_wichuraiana	Rw3G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1123
AarI	CACCTGC	1 cut(s)	709
AatII	GACGTC	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	709
AccI	GTMKAC	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	559
AclWI	GGATC	2 cut(s)	290, 344
AcsI	RAATTY	4 cut(s)	164, 565, 700, 751
AcuI	CTGAAG	4 cut(s)	632, 755, 770, 914
AcyI	GRCGYC	2 cut(s)	63, 216
AfaI	GTAC	2 cut(s)	29, 581
AfiI	CCNNNNNNNGG	1 cut(s)	333
AgsI	TTSAA	6 cut(s)	164, 571, 920, 980, 1042, 1072
AloI	GAACNNNNNNTCC	2 cut(s)	762, 794
Alw26I	GTCTC	2 cut(s)	801, 892
AlwI	GGATC	2 cut(s)	290, 344
AlwNI	CAGNNNCTG	1 cut(s)	80
Ama87I	CYCGRG	3 cut(s)	148, 170, 380
Aor13HI	TCCGGA	1 cut(s)	559
AoxI	GGCC	1 cut(s)	152
ApoI	RAATTY	4 cut(s)	164, 565, 700, 751
AspLEI	GCGC	2 cut(s)	520, 1026
AspS9I	GGNCC	2 cut(s)	676, 928
AsuC2I	CCSGG	1 cut(s)	848
AsuHPI	GGTGA	4 cut(s)	34, 223, 698, 733
AvaI	CYCGRG	3 cut(s)	148, 170, 380
AvaII	GGWCC	2 cut(s)	676, 928
AxyI	CCTNAGG	1 cut(s)	584
BanII	GRGCYC	2 cut(s)	8, 149
BarI	GAAGNNNNNNTAC	2 cut(s)	563, 595
BbsI	GAAGAC	1 cut(s)	329
BceAI	ACGGC	2 cut(s)	23, 536
BcnI	CCSGG	1 cut(s)	848
BcoDI	GTCTC	2 cut(s)	801, 892
BfmI	CTRYAG	2 cut(s)	692, 903
BfuAI	ACCTGC	1 cut(s)	709
BglI	GCCNNNNNGGC	1 cut(s)	506
BglII	AGATCT	3 cut(s)	201, 342, 933
Bme1390I	CCNGG	1 cut(s)	848
Bme18I	GGWCC	2 cut(s)	676, 928
BmeT110I	CYCGRG	3 cut(s)	148, 170, 380
BmgT120I	GGNCC	2 cut(s)	676, 928
BmiI	GGNNCC	3 cut(s)	531, 678, 747
BmrFI	CCNGG	1 cut(s)	848
BmrI	ACTGGG	1 cut(s)	1104
BmsI	GCATC	1 cut(s)	949
BmuI	ACTGGG	1 cut(s)	1104
BpiI	GAAGAC	1 cut(s)	329
BpmI	CTGGAG	2 cut(s)	341, 789
Bpu10I	CCTNAGC	1 cut(s)	627
BpuMI	CCSGG	1 cut(s)	848
BsaAI	YACGTR	1 cut(s)	869
BsaBI	GATNNNNATC	1 cut(s)	341
BsaHI	GRCGYC	2 cut(s)	63, 216
BsaI	GGTCTC	1 cut(s)	892
BsaJI	CCNNGG	1 cut(s)	504
BsaWI	WCCGGW	2 cut(s)	526, 559
BsaXI	ACNNNNNCTCC	2 cut(s)	762, 792
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	1110
Bse21I	CCTNAGG	1 cut(s)	584
Bse3DI	GCAATG	1 cut(s)	327
Bse8I	GATNNNNATC	1 cut(s)	341
BseAI	TCCGGA	1 cut(s)	559
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	2 cut(s)	412, 952
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	4 cut(s)	151, 363, 575, 641
BseNI	ACTGG	1 cut(s)	1110
BseRI	GAGGAG	6 cut(s)	109, 112, 449, 508, 513, 601
BseYI	CCCAGC	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	154
BsiHKCI	CYCGRG	3 cut(s)	148, 170, 380
BsiSI	CCGG	4 cut(s)	527, 560, 743, 848
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmAI	GTCTC	2 cut(s)	801, 892
BsnI	GGCC	1 cut(s)	154
Bso31I	GGTCTC	1 cut(s)	892
BsoBI	CYCGRG	3 cut(s)	148, 170, 380
Bsp1286I	GDGCHC	2 cut(s)	8, 149
Bsp13I	TCCGGA	1 cut(s)	559
Bsp143I	GATC	6 cut(s)	201, 282, 336, 342, 933, 1000
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	4 cut(s)	150, 364, 576, 640
BspEI	TCCGGA	1 cut(s)	559
BspLI	GGNNCC	3 cut(s)	531, 678, 747
BspMAI	CTGCAG	1 cut(s)	696
BspMI	ACCTGC	1 cut(s)	709
BspPI	GGATC	2 cut(s)	290, 344
BspTNI	GGTCTC	1 cut(s)	892
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	1110
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	6 cut(s)	201, 282, 336, 342, 933, 1000
BssNI	GRCGYC	2 cut(s)	63, 216
Bst4CI	ACNGT	2 cut(s)	425, 907
Bst6I	CTCTTC	4 cut(s)	266, 272, 485, 890
BstACI	GRCGYC	2 cut(s)	63, 216
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstBAI	YACGTR	1 cut(s)	869
BstC8I	GCNNGC	2 cut(s)	254, 516
BstDEI	CTNAG	4 cut(s)	137, 372, 584, 627
BstF5I	GGATG	2 cut(s)	412, 952
BstHHI	GCGC	2 cut(s)	520, 1026
BstKTI	GATC	6 cut(s)	204, 285, 339, 345, 936, 1003
BstMAI	GTCTC	2 cut(s)	801, 892
BstMBI	GATC	6 cut(s)	201, 282, 336, 342, 933, 1000
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	846
BstSFI	CTRYAG	2 cut(s)	692, 903
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	3 cut(s)	201, 342, 933
BstYI	RGATCY	3 cut(s)	201, 342, 933
Bsu36I	CCTNAGG	1 cut(s)	584
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	412, 952
BtsIMutI	CAGTG	1 cut(s)	912
BveI	ACCTGC	1 cut(s)	709
Cac8I	GCNNGC	2 cut(s)	254, 516
CaiI	CAGNNNCTG	1 cut(s)	80
CfoI	GCGC	2 cut(s)	520, 1026
Cfr13I	GGNCC	2 cut(s)	676, 928
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	28, 580
CviAII	CATG	3 cut(s)	515, 794, 823
CviQI	GTAC	2 cut(s)	28, 580
DdeI	CTNAG	4 cut(s)	137, 372, 584, 627
DpnI	GATC	6 cut(s)	203, 284, 338, 344, 935, 1002
DpnII	GATC	6 cut(s)	201, 282, 336, 342, 933, 1000
Eam1104I	CTCTTC	4 cut(s)	266, 272, 485, 890
EarI	CTCTTC	4 cut(s)	266, 272, 485, 890
Eco24I	GRGCYC	2 cut(s)	8, 149
Eco31I	GGTCTC	1 cut(s)	892
Eco47I	GGWCC	2 cut(s)	676, 928
Eco57I	CTGAAG	4 cut(s)	632, 755, 770, 914
Eco81I	CCTNAGG	1 cut(s)	584
Eco88I	CYCGRG	3 cut(s)	148, 170, 380
EcoRI	GAATTC	2 cut(s)	700, 751
EcoT38I	GRGCYC	2 cut(s)	8, 149
FaeI	CATG	3 cut(s)	518, 797, 826
FaiI	YATR	9 cut(s)	516, 795, 824, 1059, 1061, 1066, 1076, 1097, 1123
FatI	CATG	3 cut(s)	514, 793, 822
FblI	GTMKAC	1 cut(s)	60
FokI	GGATG	2 cut(s)	419, 959
FriOI	GRGCYC	2 cut(s)	8, 149
GlaI	GCGC	2 cut(s)	519, 1025
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	2 cut(s)	341, 789
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	4 cut(s)	527, 560, 743, 848
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	520, 1026
Hin1I	GRCGYC	2 cut(s)	63, 216
Hin1II	CATG	3 cut(s)	518, 797, 826
Hin6I	GCGC	2 cut(s)	518, 1024
HinP1I	GCGC	2 cut(s)	518, 1024
HincII	GTYRAC	2 cut(s)	61, 244
HindII	GTYRAC	2 cut(s)	61, 244
HinfI	GANTC	8 cut(s)	173, 376, 389, 398, 410, 556, 730, 758
HpaII	CCGG	4 cut(s)	527, 560, 743, 848
HphI	GGTGA	4 cut(s)	34, 223, 698, 733
Hpy166II	GTNNAC	3 cut(s)	61, 244, 580
Hpy188III	TCNNGA	6 cut(s)	170, 340, 380, 560, 931, 944
Hpy8I	GTNNAC	3 cut(s)	61, 244, 580
HpyAV	CCTTC	2 cut(s)	178, 718
HpyCH4III	ACNGT	2 cut(s)	425, 907
HpyCH4IV	ACGT	3 cut(s)	216, 240, 868
HpyCH4V	TGCA	6 cut(s)	112, 514, 694, 718, 940, 1095
HpyF3I	CTNAG	4 cut(s)	137, 372, 584, 627
HpySE526I	ACGT	3 cut(s)	216, 240, 868
Hsp92I	GRCGYC	2 cut(s)	63, 216
Hsp92II	CATG	3 cut(s)	518, 797, 826
HspAI	GCGC	2 cut(s)	518, 1024
Kpn2I	TCCGGA	1 cut(s)	559
Kzo9I	GATC	6 cut(s)	201, 282, 336, 342, 933, 1000
LmnI	GCTCC	6 cut(s)	91, 99, 360, 654, 745, 913
LweI	GCATC	1 cut(s)	949
MaeII	ACGT	3 cut(s)	216, 240, 868
MaeIII	GTNAC	2 cut(s)	40, 949
MalI	GATC	6 cut(s)	203, 284, 338, 344, 935, 1002
MboI	GATC	6 cut(s)	201, 282, 336, 342, 933, 1000
MfeI	CAATTG	1 cut(s)	996
MflI	RGATCY	3 cut(s)	201, 342, 933
MhlI	GDGCHC	2 cut(s)	8, 149
MluCI	AATT	9 cut(s)	164, 565, 700, 751, 996, 1043, 1084, 1089, 1115
MlyI	GAGTC	2 cut(s)	182, 419
MmeI	TCCRAC	3 cut(s)	113, 384, 438
MroI	TCCGGA	1 cut(s)	559
MseI	TTAA	2 cut(s)	879, 1088
MslI	CAYNNNNRTG	1 cut(s)	945
MspA1I	CMGCKG	4 cut(s)	77, 141, 157, 454
MspI	CCGG	4 cut(s)	527, 560, 743, 848
MspR9I	CCNGG	1 cut(s)	848
MunI	CAATTG	1 cut(s)	996
NciI	CCSGG	1 cut(s)	848
NdeII	GATC	6 cut(s)	201, 282, 336, 342, 933, 1000
NlaIII	CATG	3 cut(s)	518, 797, 826
NlaIV	GGNNCC	3 cut(s)	531, 678, 747
NmeAIII	GCCGAG	2 cut(s)	485, 1052
NmuCI	GTSAC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	518
PaeI	GCATGC	1 cut(s)	518
PaeR7I	CTCGAG	3 cut(s)	148, 170, 380
PaqCI	CACCTGC	1 cut(s)	709
PcsI	WCGNNNNNNNCGW	3 cut(s)	291, 429, 438
PfeI	GAWTC	6 cut(s)	376, 389, 398, 556, 730, 758
PflFI	GACNNNGTC	2 cut(s)	239, 644
PfoI	TCCNGGA	1 cut(s)	846
PleI	GAGTC	2 cut(s)	181, 418
PpsI	GAGTC	2 cut(s)	181, 418
Ppu21I	YACGTR	1 cut(s)	869
PsiI	TTATAA	1 cut(s)	1123
PspFI	CCCAGC	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	531, 678, 747
PspPI	GGNCC	2 cut(s)	676, 928
PspXI	VCTCGAGB	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	696
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	3 cut(s)	201, 342, 933
PsyI	GACNNNGTC	2 cut(s)	239, 644
PvuII	CAGCTG	2 cut(s)	77, 141
RsaI	GTAC	2 cut(s)	29, 581
RsaNI	GTAC	2 cut(s)	28, 580
RseI	CAYNNNNRTG	1 cut(s)	945
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	879, 1088
Sau3AI	GATC	6 cut(s)	201, 282, 336, 342, 933, 1000
Sau96I	GGNCC	2 cut(s)	676, 928
SchI	GAGTC	2 cut(s)	182, 419
ScrFI	CCNGG	1 cut(s)	848
SduI	GDGCHC	2 cut(s)	8, 149
SfaNI	GCATC	1 cut(s)	949
SfcI	CTRYAG	2 cut(s)	692, 903
Sfr274I	CTCGAG	3 cut(s)	148, 170, 380
SinI	GGWCC	2 cut(s)	676, 928
SlaI	CTCGAG	3 cut(s)	148, 170, 380
SmiMI	CAYNNNNRTG	1 cut(s)	945
SmlI	CTYRAG	3 cut(s)	148, 170, 380
SmoI	CTYRAG	3 cut(s)	148, 170, 380
SphI	GCATGC	1 cut(s)	518
Sse9I	AATT	9 cut(s)	164, 565, 700, 751, 996, 1043, 1084, 1089, 1115
StyD4I	CCNGG	1 cut(s)	846
TaaI	ACNGT	2 cut(s)	425, 907
TaiI	ACGT	3 cut(s)	219, 243, 871
TaqI	TCGA	6 cut(s)	60, 149, 171, 176, 381, 1003
TasI	AATT	9 cut(s)	164, 565, 700, 751, 996, 1043, 1084, 1089, 1115
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	6 cut(s)	376, 389, 398, 556, 730, 758
Tru1I	TTAA	2 cut(s)	879, 1088
Tru9I	TTAA	2 cut(s)	879, 1088
TscAI	CASTG	1 cut(s)	912
TseFI	GTSAC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	3 cut(s)	293, 782, 1026
TspGWI	ACGGA	1 cut(s)	805
TspRI	CASTG	1 cut(s)	912
Tth111I	GACNNNGTC	2 cut(s)	239, 644
VpaK11BI	GGWCC	2 cut(s)	676, 928
XapI	RAATTY	4 cut(s)	164, 565, 700, 751
XceI	RCATGY	1 cut(s)	518
XhoI	CTCGAG	3 cut(s)	148, 170, 380
XmiI	GTMKAC	1 cut(s)	60
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.