Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002231.1

Orthogroup ID

OG0005324

Physical Location & Seq

Genomic Coordinates Reverse (-)

144629 .. 146994

Gene Structure 2366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002231.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgggttcaggtttattcacatgggtgggggagtatactgaccccatccatagtcccactccaccaccaccttcaggttcttcttcctgcccaaccaaacaagagttttccaaaccactccttgaatttctcaaatcaattggggtagacactagcaagttgcaactgaccgagtatgatatcgtttccatcataaccaagtatgcggctcaaacaacctttcccacccaacaaacaagaggagaattgtatgcaatgagaggctccattgcctcttccgaaggaagtccatttccctcaaccagatccacggcttgctcgagcagtattatctccaaaatcaacaaccagattcctcctcatctgattacaaatccaactctaactcatcggactctgactctcaagaagaagataaacactgcaaaggaaagagagagaaatgcattcgaagttgctatacctaaacggatgggccgttttgttgccatagttctcgataatatgaagctagtgtatttgaagaagtctggacgtgaggactacttacagaagaatactcaccaactgctccaagtcgcagcccttgtaaacaagccttctagatctgatgcatcagatatttctctccaactttcaagcacccccaaagacttttctattggcatgctctcagatgacaaattctccgaggaagaatgtgaagaactatgccaaagaatggaaggtggcttggtcaatagaccaacagtagtggagctccaacacaagcccttagggtttgacactgatgatcttccttcgccgttgttggaggacggactgatcatagtccagatttcagaggccccgtttcttaggggtctggatagatgtaaaaccttgcaagttggaaagcttctgtcgcctcccaatggcactatgccaaaagcccatgaacttgctcaacgtttgaaggttctctggaacaacgtttcaaactggtctgtggctccaatgggcaaggaggatgcttcggtgattgctcccattgtctcaggagactctgtgattgtaccgggagaggtgcatgtgggtccggtgattgctcccattgtctcaggagactctgtgattgtaccacaagcacccgcagatagcctggcctccacctctgtggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB

Protein Analysis

387

Amino Acids

42.07

Weight (kDa)

6.21

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08430 AT5G08430 AT5G23480 AT5G23480 AT5G23480 AT5G23480 AT5G23480 AT5G23480
fragaria_vesca	FvH4_1g25810 FvH4_1g25810 FvH4_1g25810
malus_domestica	MD15G1140400.v1.1
prunus_persica	Prupe.4G286800_v2.0.a1 Prupe.4G286800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484911 RchiOBHm_Chr3g0484921
rosa_laevigata	RLG00000013602 RLG00000023186
rosa_multiflora	Rmu_sc0002231.1_g000024 Rmu_sc0005946.1_g000003 Rmu_sc0005946.1_g000004
rosa_roxburghii	Rroxscaffold_6G00397360
rosa_rugosa	Rorug03G0214200
rosa_samantha	Rh3AG264600 Rh3BG300100 Rh3CG297800 Rh3DG293900 Rh6CG195000
rosa_wichuraiana	Rw3G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	721
AccI	GTMKAC	2 cut(s)	35, 147
AciI	CCGC	2 cut(s)	206, 1131
AclI	AACGTT	2 cut(s)	949, 972
AclWI	GGATC	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	125, 683
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	1056, 1119
AfiI	CCNNNNNNNGG	3 cut(s)	74, 721, 914
AgsI	TTSAA	5 cut(s)	125, 523, 639, 955, 978
AjiI	CACGTC	1 cut(s)	536
AjnI	CCWGG	1 cut(s)	1140
AleI	CACNNNNGTG	2 cut(s)	23, 1154
AluBI	AGCT	3 cut(s)	511, 760, 898
AluI	AGCT	3 cut(s)	511, 760, 898
Alw21I	GWGCWC	1 cut(s)	762
Alw26I	GTCTC	4 cut(s)	1035, 1039, 1098, 1102
AlwI	GGATC	1 cut(s)	300
Ama87I	CYCGRG	1 cut(s)	319
AoxI	GGCC	3 cut(s)	475, 846, 1143
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	2 cut(s)	125, 683
AspS9I	GGNCC	3 cut(s)	475, 847, 1076
AsuC2I	CCSGG	1 cut(s)	1059
AsuHPI	GGTGA	3 cut(s)	554, 1030, 1093
AsuII	TTCGAA	1 cut(s)	450
AvaI	CYCGRG	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	1076
AxyI	CCTNAGG	1 cut(s)	775
BanII	GRGCYC	1 cut(s)	762
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
Bbv12I	GWGCWC	1 cut(s)	762
BbvI	GCAGC	1 cut(s)	593
BccI	CCATC	3 cut(s)	53, 197, 466
BceAI	ACGGC	3 cut(s)	327, 462, 790
BciT130I	CCWGG	1 cut(s)	1142
BclI	TGATCA	1 cut(s)	825
BcnI	CCSGG	1 cut(s)	1059
BcoDI	GTCTC	4 cut(s)	1035, 1039, 1098, 1102
BfaI	CTAG	3 cut(s)	153, 512, 603
BglII	AGATCT	1 cut(s)	605
BisI	GCNGC	2 cut(s)	207, 582
BlsI	GCNGC	2 cut(s)	208, 583
Bme1390I	CCNGG	2 cut(s)	1059, 1142
Bme18I	GGWCC	1 cut(s)	1076
BmeT110I	CYCGRG	1 cut(s)	319
BmgBI	CACGTC	1 cut(s)	536
BmgT120I	GGNCC	3 cut(s)	475, 847, 1076
BmiI	GGNNCC	4 cut(s)	265, 849, 993, 1077
BmrFI	CCNGG	2 cut(s)	1059, 1142
BmsI	GCATC	3 cut(s)	601, 623, 1000
Bpu14I	TTCGAA	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	1059
BsaJI	CCNNGG	2 cut(s)	309, 690
BsaWI	WCCGGW	1 cut(s)	1078
BsaXI	ACNNNNNCTCC	6 cut(s)	671, 701, 1032, 1062, 1095, 1125
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 721, 914
Bse1I	ACTGG	1 cut(s)	986
Bse21I	CCTNAGG	1 cut(s)	775
Bse3DI	GCAATG	2 cut(s)	261, 267
BseBI	CCWGG	1 cut(s)	1142
BseDI	CCNNGG	2 cut(s)	309, 690
BseGI	GGATG	3 cut(s)	45, 477, 1015
BseLI	CCNNNNNNNGG	3 cut(s)	74, 721, 914
BseMI	GCAATG	2 cut(s)	261, 267
BseMII	CTCAG	3 cut(s)	687, 1050, 1113
BseNI	ACTGG	1 cut(s)	986
BseRI	GAGGAG	2 cut(s)	255, 348
BseXI	GCAGC	1 cut(s)	593
BshFI	GGCC	3 cut(s)	477, 848, 1145
BsiHKAI	GWGCWC	1 cut(s)	762
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	2 cut(s)	1058, 1079
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	74, 721, 914
BsmAI	GTCTC	4 cut(s)	1035, 1039, 1098, 1102
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	3 cut(s)	477, 848, 1145
BsoBI	CYCGRG	1 cut(s)	319
Bsp119I	TTCGAA	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	762
Bsp143I	GATC	4 cut(s)	305, 605, 793, 825
BspACI	CCGC	2 cut(s)	206, 1131
BspANI	GGCC	3 cut(s)	477, 848, 1145
BspCNI	CTCAG	3 cut(s)	686, 1049, 1112
BspLI	GGNNCC	4 cut(s)	265, 849, 993, 1077
BspPI	GGATC	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	450
BsrDI	GCAATG	2 cut(s)	261, 267
BsrI	ACTGG	1 cut(s)	986
BssECI	CCNNGG	2 cut(s)	309, 690
BssMI	GATC	4 cut(s)	305, 605, 793, 825
BssNAI	GTATAC	1 cut(s)	36
Bst1107I	GTATAC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	1142
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	1 cut(s)	280
BstBI	TTCGAA	1 cut(s)	450
BstC8I	GCNNGC	2 cut(s)	316, 668
BstDEI	CTNAG	5 cut(s)	673, 775, 857, 1036, 1099
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	3 cut(s)	45, 477, 1015
BstKTI	GATC	4 cut(s)	308, 608, 796, 828
BstMAI	GTCTC	4 cut(s)	1035, 1039, 1098, 1102
BstMBI	GATC	4 cut(s)	305, 605, 793, 825
BstMWI	GCNNNNNNNGC	1 cut(s)	904
BstNI	CCWGG	1 cut(s)	1142
BstNSI	RCATGY	2 cut(s)	670, 1073
BstSCI	CCNGG	2 cut(s)	1057, 1140
BstV1I	GCAGC	1 cut(s)	593
BstX2I	RGATCY	2 cut(s)	305, 605
BstXI	CCANNNNNNTGG	1 cut(s)	1156
BstYI	RGATCY	2 cut(s)	305, 605
BstZ17I	GTATAC	1 cut(s)	36
Bsu36I	CCTNAGG	1 cut(s)	775
BsuRI	GGCC	3 cut(s)	477, 848, 1145
BtgI	CCRYGG	1 cut(s)	309
BtrI	CACGTC	1 cut(s)	536
BtsCI	GGATG	3 cut(s)	45, 477, 1015
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	2 cut(s)	420, 786
Cac8I	GCNNGC	2 cut(s)	316, 668
Cfr13I	GGNCC	3 cut(s)	475, 847, 1076
Csp6I	GTAC	2 cut(s)	1055, 1118
CspCI	CAANNNNNGTGG	2 cut(s)	735, 770
CviAII	CATG	4 cut(s)	21, 667, 935, 1070
CviQI	GTAC	2 cut(s)	1055, 1118
DdeI	CTNAG	5 cut(s)	673, 775, 857, 1036, 1099
DpnI	GATC	4 cut(s)	307, 607, 795, 827
DpnII	GATC	4 cut(s)	305, 605, 793, 825
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Ecl136II	GAGCTC	1 cut(s)	760
Eco24I	GRGCYC	1 cut(s)	762
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	1076
Eco53kI	GAGCTC	1 cut(s)	760
Eco57I	CTGAAG	1 cut(s)	57
Eco81I	CCTNAGG	1 cut(s)	775
Eco88I	CYCGRG	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	760
EcoO109I	RGGNCCY	1 cut(s)	847
EcoRII	CCWGG	1 cut(s)	1140
EcoRV	GATATC	1 cut(s)	181
EcoT22I	ATGCAT	2 cut(s)	448, 616
EcoT38I	GRGCYC	1 cut(s)	762
FaeI	CATG	4 cut(s)	24, 670, 938, 1073
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	4 cut(s)	20, 666, 934, 1069
FauI	CCCGC	1 cut(s)	1138
FbaI	TGATCA	1 cut(s)	825
FblI	GTMKAC	2 cut(s)	35, 147
Fnu4HI	GCNGC	2 cut(s)	207, 582
FokI	GGATG	3 cut(s)	32, 484, 1022
FriOI	GRGCYC	1 cut(s)	762
Fsp4HI	GCNGC	2 cut(s)	207, 582
FspBI	CTAG	3 cut(s)	153, 512, 603
GluI	GCNGC	2 cut(s)	207, 582
HaeIII	GGCC	3 cut(s)	477, 848, 1145
HapII	CCGG	2 cut(s)	1058, 1079
Hin1II	CATG	4 cut(s)	24, 670, 938, 1073
HindIII	AAGCTT	1 cut(s)	896
HinfI	GANTC	5 cut(s)	352, 394, 400, 1043, 1106
HpaII	CCGG	2 cut(s)	1058, 1079
HphI	GGTGA	3 cut(s)	554, 1030, 1093
Hpy166II	GTNNAC	3 cut(s)	36, 148, 592
Hpy188I	TCNGA	9 cut(s)	280, 366, 393, 399, 610, 619, 676, 691, 844
Hpy188III	TCNNGA	9 cut(s)	406, 497, 531, 603, 835, 866, 964, 1038, 1101
Hpy8I	GTNNAC	3 cut(s)	36, 148, 592
HpyAV	CCTTC	6 cut(s)	81, 275, 609, 719, 810, 949
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4IV	ACGT	3 cut(s)	535, 949, 972
HpyCH4V	TGCA	7 cut(s)	163, 254, 425, 446, 614, 886, 1069
HpyF10VI	GCNNNNNNNGC	1 cut(s)	904
HpyF3I	CTNAG	5 cut(s)	673, 775, 857, 1036, 1099
HpySE526I	ACGT	3 cut(s)	535, 949, 972
Hsp92II	CATG	4 cut(s)	24, 670, 938, 1073
Ksp22I	TGATCA	1 cut(s)	825
Kzo9I	GATC	4 cut(s)	305, 605, 793, 825
LmnI	GCTCC	7 cut(s)	269, 576, 757, 765, 997, 1030, 1093
Lsp1109I	GCAGC	1 cut(s)	593
LweI	GCATC	3 cut(s)	601, 623, 1000
MaeI	CTAG	3 cut(s)	153, 512, 603
MaeII	ACGT	3 cut(s)	535, 949, 972
MalI	GATC	4 cut(s)	307, 607, 795, 827
MboI	GATC	4 cut(s)	305, 605, 793, 825
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	2 cut(s)	305, 605
MhlI	GDGCHC	1 cut(s)	762
MluCI	AATT	4 cut(s)	125, 138, 245, 683
MlyI	GAGTC	4 cut(s)	388, 394, 1037, 1100
MmeI	TCCRAC	5 cut(s)	401, 655, 787, 792, 871
Mph1103I	ATGCAT	2 cut(s)	448, 616
MslI	CAYNNNNRTG	2 cut(s)	23, 1154
MspI	CCGG	2 cut(s)	1058, 1079
MspR9I	CCNGG	2 cut(s)	1059, 1142
MunI	CAATTG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	1142
MwoI	GCNNNNNNNGC	1 cut(s)	904
NciI	CCSGG	1 cut(s)	1059
NdeII	GATC	4 cut(s)	305, 605, 793, 825
NlaIII	CATG	4 cut(s)	24, 670, 938, 1073
NlaIV	GGNNCC	4 cut(s)	265, 849, 993, 1077
NsiI	ATGCAT	2 cut(s)	448, 616
NspI	RCATGY	2 cut(s)	670, 1073
NspV	TTCGAA	1 cut(s)	450
OliI	CACNNNNGTG	2 cut(s)	23, 1154
PaeI	GCATGC	1 cut(s)	670
PaeR7I	CTCGAG	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	2 cut(s)	317, 475
PctI	GAATGC	1 cut(s)	446
PfeI	GAWTC	1 cut(s)	352
PflMI	CCANNNNNTGG	1 cut(s)	721
PkrI	GCNGC	2 cut(s)	208, 583
PleI	GAGTC	4 cut(s)	388, 394, 1037, 1100
PpsI	GAGTC	4 cut(s)	388, 394, 1037, 1100
Psp124BI	GAGCTC	1 cut(s)	762
Psp1406I	AACGTT	2 cut(s)	949, 972
Psp6I	CCWGG	1 cut(s)	1140
PspGI	CCWGG	1 cut(s)	1140
PspN4I	GGNNCC	4 cut(s)	265, 849, 993, 1077
PspPI	GGNCC	3 cut(s)	475, 847, 1076
PspXI	VCTCGAGB	1 cut(s)	319
PsuI	RGATCY	2 cut(s)	305, 605
RsaI	GTAC	2 cut(s)	1056, 1119
RsaNI	GTAC	2 cut(s)	1055, 1118
RseI	CAYNNNNRTG	2 cut(s)	23, 1154
SacI	GAGCTC	1 cut(s)	762
SatI	GCNGC	2 cut(s)	207, 582
Sau3AI	GATC	4 cut(s)	305, 605, 793, 825
Sau96I	GGNCC	3 cut(s)	475, 847, 1076
SchI	GAGTC	4 cut(s)	388, 394, 1037, 1100
ScrFI	CCNGG	2 cut(s)	1059, 1142
SduI	GDGCHC	1 cut(s)	762
SfaNI	GCATC	3 cut(s)	601, 623, 1000
Sfr274I	CTCGAG	1 cut(s)	319
SfuI	TTCGAA	1 cut(s)	450
SinI	GGWCC	1 cut(s)	1076
SlaI	CTCGAG	1 cut(s)	319
SmiMI	CAYNNNNRTG	2 cut(s)	23, 1154
SmlI	CTYRAG	2 cut(s)	319, 404
SmoI	CTYRAG	2 cut(s)	319, 404
SphI	GCATGC	1 cut(s)	670
Sse9I	AATT	4 cut(s)	125, 138, 245, 683
SsiI	CCGC	2 cut(s)	206, 1131
SspMI	CTAG	3 cut(s)	153, 512, 603
SstI	GAGCTC	1 cut(s)	762
StyD4I	CCNGG	2 cut(s)	1057, 1140
TaaI	ACNGT	1 cut(s)	751
TaiI	ACGT	3 cut(s)	538, 952, 975
TaqI	TCGA	3 cut(s)	320, 450, 498
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	4 cut(s)	125, 138, 245, 683
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	352
TscAI	CASTG	2 cut(s)	427, 793
TseI	GCWGC	1 cut(s)	581
TspDTI	ATGAA	2 cut(s)	521, 951
TspGWI	ACGGA	2 cut(s)	484, 834
TspRI	CASTG	2 cut(s)	427, 793
Van91I	CCANNNNNTGG	1 cut(s)	721
VpaK11BI	GGWCC	1 cut(s)	1076
XapI	RAATTY	2 cut(s)	125, 683
XbaI	TCTAGA	1 cut(s)	602
XceI	RCATGY	2 cut(s)	670, 1073
XhoI	CTCGAG	1 cut(s)	319
XmiI	GTMKAC	2 cut(s)	35, 147
XspI	CTAG	3 cut(s)	153, 512, 603
Zsp2I	ATGCAT	2 cut(s)	448, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.