Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009163

Physical Location & Seq

Genomic Coordinates Forward (+)

2803833 .. 2805606

Gene Structure 1774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAGGTCGAAAGAGTCCAAGACATTTCATCTTCTTCTCTACTAACAGAAGCAATCCCGTTGGAGTTCATCAGATCAGAGAAAGAACAACCAGCGATCACAACATTCCGAGGTCCAACGCCGGCGATTCCCGTCGTCGATCTAAGCGATCCCGACGAAGAAAGCGTGAGGCGCGCGGTGGTGAAAGCGAGTGAAGAATGGGGGCTATTCCAAGTGGTTAACCACGGGATTCCGACGGAGCTGATACGACGTTTACAAGACGTCGGAAGAAAATTCTTCGAGCTTCCTTCGTCGGAGAAAGAATCCGTCGCTAAACCGGAAGATTCGAAAGACATTGAAGGATACGGAACAAAGCTTCAGAAAGATCCAGAAGGTAAAAAAGCTTGGGTCGATCATCTCTTCCATCGAATCTGGCCACCGTCATGCGTCAATTACAGATTCTGGCCTAAGAATCCACCTGAATACAGGGAGGTGAATGAAGAGTATGCAGTGCATGTGAAGAAGCTATCGGAGACGTTATTAGGGATTCTCTCGGATGGATTAGGGTTAAAGCGTGATGCGTTGAAAGAAGGTCTCGGCGGAGAGATGGCGGAGTATATGATGAAGATTAACTATTATCCGCCGTGTCCTCGGCCGGATTTAGCTTTAGGTGTACCGGCTCATACAGATCTCAGTGGAATCACTCTTCTTGTTCCTAACGAAGTTCCTGGACTTCAAGTTTTCAAAGATGATCACTGGTTCGATGCAGAGTATATTCCCTCCGCCGTCATTGTTCACATCGGCGATCAGATTCTGAGGTTGAGTAATGGGAGGTATAAAAATGTGTTGCATAGGACGACGGTGGATAAAGAGAAGACGAGGATGTCGTGGCCGGTTTTCTTGGAGCCTCCCCGTGAAAAGATTGTTGGACCTTTACCGGAACTAACCGGAGATGATAATCCTCCAAAGTTTAAACCGTTTGCTTTCAAGGATTACAGTTACCGCAAGCTCAATAAACTTCCTCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0010033 GO:0016491 GO:0016705 GO:0016706 GO:0042221 GO:0042440 GO:0045431 GO:0046148 GO:0050896 GO:0051213 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055114 GO:0071704 GO:0080167 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

336

Amino Acids

38.28

Weight (kDa)

5.64

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	43 - 151	7.1e-26	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	198 - 296	2.8e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08640 AT5G08640 AT5G43935 AT5G63580 AT5G63580
fragaria_vesca	FvH4_2g26440
malus_domestica	MD08G1121600.v1.1 MD08G1168600.v1.1 MD15G1354100.v1.1
prunus_persica	Prupe.1G502700_v2.0.a1 Prupe.1G502800_v2.0.a1
pyrus_communis	pycom08g14410
rosa_chinensis	RchiOBHm_Chr6g0295121
rosa_laevigata	RLG00000011819
rosa_multiflora	Rmu_sc0002096.1_g000020
rosa_roxburghii	Rroxscaffold_7G00172710
rosa_rugosa	Rorug06G0249300
rosa_samantha	Rh6AG362300 Rh6BG370000 Rh6CG376600 Rh6DG363100
rosa_wichuraiana	Rw6G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	862
AatII	GACGTC	1 cut(s)	264
AccII	CGCG	2 cut(s)	174, 176
AciI	CCGC	6 cut(s)	176, 579, 590, 620, 762, 982
AclWI	GGATC	2 cut(s)	143, 359
AcoI	YGGCCR	3 cut(s)	413, 632, 869
AcsI	RAATTY	1 cut(s)	272
AcuI	CTGAAG	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	1 cut(s)	654
AgsI	TTSAA	5 cut(s)	338, 565, 716, 724, 967
AjnI	CCWGG	1 cut(s)	706
AjuI	GAANNNNNNNTTGG	2 cut(s)	888, 920
AluBI	AGCT	7 cut(s)	241, 283, 355, 383, 505, 644, 988
AluI	AGCT	7 cut(s)	241, 283, 355, 383, 505, 644, 988
Alw26I	GTCTC	2 cut(s)	506, 578
AlwI	GGATC	2 cut(s)	143, 359
AlwNI	CAGNNNCTG	2 cut(s)	441, 793
AoxI	GGCC	4 cut(s)	413, 443, 632, 869
ApoI	RAATTY	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	174, 176
AspS9I	GGNCC	2 cut(s)	113, 908
AsuHPI	GGTGA	2 cut(s)	193, 484
AsuII	TTCGAA	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	113, 908
BalI	TGGCCA	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	860
BccI	CCATC	3 cut(s)	411, 530, 580
BceAI	ACGGC	2 cut(s)	607, 749
BciT130I	CCWGG	1 cut(s)	708
BciVI	GTATCC	1 cut(s)	335
BclI	TGATCA	1 cut(s)	730
BcoDI	GTCTC	2 cut(s)	506, 578
BfuI	GTATCC	1 cut(s)	335
BglII	AGATCT	1 cut(s)	667
Bme1390I	CCNGG	1 cut(s)	708
Bme18I	GGWCC	2 cut(s)	113, 908
BmgT120I	GGNCC	2 cut(s)	113, 908
BmiI	GGNNCC	1 cut(s)	885
BmrFI	CCNGG	1 cut(s)	708
BmsI	GCATC	2 cut(s)	547, 733
BpiI	GAAGAC	1 cut(s)	860
Bpu14I	TTCGAA	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	936
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	578
BsaJI	CCNNGG	3 cut(s)	109, 223, 629
BsaWI	WCCGGW	3 cut(s)	316, 916, 926
Bse118I	RCCGGY	3 cut(s)	121, 655, 871
Bse1I	ACTGG	1 cut(s)	740
Bse8I	GATNNNNATC	1 cut(s)	936
BseBI	CCWGG	1 cut(s)	708
BseDI	CCNNGG	3 cut(s)	109, 223, 629
BseGI	GGATG	2 cut(s)	541, 867
BseJI	GATNNNNATC	1 cut(s)	936
BseMII	CTCAG	2 cut(s)	685, 785
BseNI	ACTGG	1 cut(s)	740
BsePI	GCGCGC	1 cut(s)	172
BseX3I	CGGCCG	1 cut(s)	632
Bsh1236I	CGCG	2 cut(s)	174, 176
Bsh1285I	CGRYCG	1 cut(s)	635
BshFI	GGCC	4 cut(s)	415, 445, 634, 871
BsiEI	CGRYCG	1 cut(s)	635
BsiSI	CCGG	7 cut(s)	122, 317, 635, 656, 872, 917, 927
BsmAI	GTCTC	2 cut(s)	506, 578
BsmBI	CGTCTC	1 cut(s)	506
BsnI	GGCC	4 cut(s)	415, 445, 634, 871
Bso31I	GGTCTC	1 cut(s)	578
Bsp119I	TTCGAA	1 cut(s)	326
Bsp143I	GATC	9 cut(s)	74, 96, 139, 148, 364, 391, 667, 730, 784
BspACI	CCGC	6 cut(s)	176, 579, 590, 620, 762, 982
BspANI	GGCC	4 cut(s)	415, 445, 634, 871
BspCNI	CTCAG	2 cut(s)	684, 786
BspFNI	CGCG	2 cut(s)	174, 176
BspLI	GGNNCC	1 cut(s)	885
BspPI	GGATC	2 cut(s)	143, 359
BspT104I	TTCGAA	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	578
BsrFI	RCCGGY	3 cut(s)	121, 655, 871
BsrI	ACTGG	1 cut(s)	740
BssAI	RCCGGY	3 cut(s)	121, 655, 871
BssECI	CCNNGG	3 cut(s)	109, 223, 629
BssHII	GCGCGC	1 cut(s)	172
BssMI	GATC	9 cut(s)	74, 96, 139, 148, 364, 391, 667, 730, 784
BssNI	GRCGYC	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	4 cut(s)	420, 841, 957, 977
Bst6I	CTCTTC	3 cut(s)	404, 474, 690
BstACI	GRCGYC	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	3 cut(s)	123, 174, 986
BstDEI	CTNAG	4 cut(s)	143, 447, 671, 794
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	541, 867
BstFNI	CGCG	2 cut(s)	174, 176
BstHHI	GCGC	2 cut(s)	174, 176
BstKTI	GATC	9 cut(s)	77, 99, 142, 151, 367, 394, 670, 733, 787
BstMAI	GTCTC	2 cut(s)	506, 578
BstMBI	GATC	9 cut(s)	74, 96, 139, 148, 364, 391, 667, 730, 784
BstMCI	CGRYCG	1 cut(s)	635
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	708
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	706
BstUI	CGCG	2 cut(s)	174, 176
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	2 cut(s)	364, 667
BstYI	RGATCY	2 cut(s)	364, 667
BstZI	CGGCCG	1 cut(s)	632
BsuI	GTATCC	1 cut(s)	335
BsuRI	GGCC	4 cut(s)	415, 445, 634, 871
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	541, 867
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	3 cut(s)	495, 679, 733
Cac8I	GCNNGC	3 cut(s)	123, 174, 986
CaiI	CAGNNNCTG	2 cut(s)	441, 793
CfoI	GCGC	2 cut(s)	174, 176
Cfr10I	RCCGGY	3 cut(s)	121, 655, 871
Cfr13I	GGNCC	2 cut(s)	113, 908
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	653
CviAII	CATG	2 cut(s)	423, 494
CviQI	GTAC	1 cut(s)	653
DdeI	CTNAG	4 cut(s)	143, 447, 671, 794
DpnI	GATC	9 cut(s)	76, 98, 141, 150, 366, 393, 669, 732, 786
DpnII	GATC	9 cut(s)	74, 96, 139, 148, 364, 391, 667, 730, 784
DraI	TTTAAA	1 cut(s)	952
DrdI	GACNNNNNNGTC	1 cut(s)	862
DseDI	GACNNNNNNGTC	1 cut(s)	862
EaeI	YGGCCR	3 cut(s)	413, 632, 869
EagI	CGGCCG	1 cut(s)	632
Eam1104I	CTCTTC	3 cut(s)	404, 474, 690
EarI	CTCTTC	3 cut(s)	404, 474, 690
EciI	GGCGGA	4 cut(s)	594, 605, 609, 751
EclXI	CGGCCG	1 cut(s)	632
Eco31I	GGTCTC	1 cut(s)	578
Eco47I	GGWCC	2 cut(s)	113, 908
Eco52I	CGGCCG	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	706
Esp3I	CGTCTC	1 cut(s)	506
FaeI	CATG	2 cut(s)	426, 497
FaiI	YATR	9 cut(s)	424, 486, 495, 597, 599, 663, 753, 816, 831
FatI	CATG	2 cut(s)	422, 493
FbaI	TGATCA	1 cut(s)	730
FokI	GGATG	2 cut(s)	548, 874
GlaI	GCGC	2 cut(s)	173, 175
HaeIII	GGCC	4 cut(s)	415, 445, 634, 871
HapII	CCGG	7 cut(s)	122, 317, 635, 656, 872, 917, 927
HgaI	GACGC	1 cut(s)	415
HhaI	GCGC	2 cut(s)	174, 176
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	426, 497
Hin6I	GCGC	2 cut(s)	172, 174
HinP1I	GCGC	2 cut(s)	172, 174
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	2 cut(s)	353, 381
HpaI	GTTAAC	1 cut(s)	220
HpaII	CCGG	7 cut(s)	122, 317, 635, 656, 872, 917, 927
HphI	GGTGA	2 cut(s)	193, 484
Hpy166II	GTNNAC	4 cut(s)	220, 254, 653, 775
Hpy188III	TCNNGA	3 cut(s)	152, 368, 1004
Hpy8I	GTNNAC	4 cut(s)	220, 254, 653, 775
Hpy99I	CGWCG	9 cut(s)	137, 140, 158, 238, 252, 266, 295, 311, 841
HpyAV	CCTTC	4 cut(s)	297, 332, 365, 563
HpyCH4III	ACNGT	4 cut(s)	420, 841, 957, 977
HpyCH4IV	ACGT	3 cut(s)	250, 261, 515
HpyCH4V	TGCA	4 cut(s)	488, 493, 746, 829
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	4 cut(s)	143, 447, 671, 794
HpySE526I	ACGT	3 cut(s)	250, 261, 515
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	426, 497
HspAI	GCGC	2 cut(s)	172, 174
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	730
KspAI	GTTAAC	1 cut(s)	220
Kzo9I	GATC	9 cut(s)	74, 96, 139, 148, 364, 391, 667, 730, 784
LmnI	GCTCC	2 cut(s)	238, 883
LweI	GCATC	2 cut(s)	547, 733
MaeII	ACGT	3 cut(s)	250, 261, 515
MaeIII	GTNAC	1 cut(s)	977
MalI	GATC	9 cut(s)	76, 98, 141, 150, 366, 393, 669, 732, 786
MboI	GATC	9 cut(s)	74, 96, 139, 148, 364, 391, 667, 730, 784
MflI	RGATCY	2 cut(s)	364, 667
MlsI	TGGCCA	1 cut(s)	415
MluCI	AATT	2 cut(s)	272, 430
MluNI	TGGCCA	1 cut(s)	415
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	6 cut(s)	42, 140, 244, 257, 273, 886
Mox20I	TGGCCA	1 cut(s)	415
MreI	CGCCGGCG	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	415
MseI	TTAA	4 cut(s)	219, 548, 609, 951
MslI	CAYNNNNRTG	1 cut(s)	421
Msp20I	TGGCCA	1 cut(s)	415
MspI	CCGG	7 cut(s)	122, 317, 635, 656, 872, 917, 927
MspR9I	CCNGG	1 cut(s)	708
MssI	GTTTAAAC	1 cut(s)	952
MvaI	CCWGG	1 cut(s)	708
MvnI	CGCG	2 cut(s)	174, 176
MwoI	GCNNNNNNNGC	1 cut(s)	171
NaeI	GCCGGC	1 cut(s)	123
NdeII	GATC	9 cut(s)	74, 96, 139, 148, 364, 391, 667, 730, 784
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	426, 497
NlaIV	GGNNCC	1 cut(s)	885
NmeAIII	GCCGAG	2 cut(s)	555, 610
NspI	RCATGY	1 cut(s)	497
NspV	TTCGAA	1 cut(s)	326
PauI	GCGCGC	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 162, 863
PdiI	GCCGGC	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	706
PleI	GAGTC	1 cut(s)	23
PmeI	GTTTAAAC	1 cut(s)	952
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	706
PspGI	CCWGG	1 cut(s)	706
PspN4I	GGNNCC	1 cut(s)	885
PspPI	GGNCC	2 cut(s)	113, 908
PstNI	CAGNNNCTG	2 cut(s)	441, 793
PsuI	RGATCY	2 cut(s)	364, 667
PteI	GCGCGC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	654
RsaNI	GTAC	1 cut(s)	653
RseI	CAYNNNNRTG	1 cut(s)	421
SaqAI	TTAA	4 cut(s)	219, 548, 609, 951
Sau3AI	GATC	9 cut(s)	74, 96, 139, 148, 364, 391, 667, 730, 784
Sau96I	GGNCC	2 cut(s)	113, 908
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	708
SfaNI	GCATC	2 cut(s)	547, 733
SfuI	TTCGAA	1 cut(s)	326
SgrAI	CRCCGGYG	1 cut(s)	121
SinI	GGWCC	2 cut(s)	113, 908
SmiMI	CAYNNNNRTG	1 cut(s)	421
Sse9I	AATT	2 cut(s)	272, 430
SsiI	CCGC	6 cut(s)	176, 579, 590, 620, 762, 982
StyD4I	CCNGG	1 cut(s)	706
TaaI	ACNGT	4 cut(s)	420, 841, 957, 977
TaiI	ACGT	3 cut(s)	253, 264, 518
TaqI	TCGA	7 cut(s)	9, 138, 279, 326, 390, 406, 741
TasI	AATT	2 cut(s)	272, 430
Tru1I	TTAA	4 cut(s)	219, 548, 609, 951
Tru9I	TTAA	4 cut(s)	219, 548, 609, 951
TscAI	CASTG	3 cut(s)	495, 679, 740
TspDTI	ATGAA	4 cut(s)	18, 58, 492, 617
TspGWI	ACGGA	3 cut(s)	251, 295, 360
TspRI	CASTG	3 cut(s)	495, 679, 740
VpaK11BI	GGWCC	2 cut(s)	113, 908
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	497
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.