Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009163

Physical Location & Seq

Genomic Coordinates Forward (+)

42475116 .. 42478826

Gene Structure 3711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1354100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCATGCGCATGAGAGAGTGCAAGACATTGCTTCAATATCCAAGGACGAAATCCCGGCGGAGTTCATTAGGTCAAAGAATGAGCAACCAGGAATCACAACCGTACATGGGACAACCCTGGAGTGCCCTACCATTGATTTTAGCATCCAGGACGATGAAAAGATCCTCAACCAAATTGTCGAGGCGAGCCGTGACTGGGGCATGTACCAGATTGTGAACCATGACATTCCCAATGAGGCCATAAAAAAGTTGCAAGAGGTGGGGAGGATATTTTTTGAGCTTCCACAAGAGGAAAAGGAGGTTTACGCTAAACCTCCAGATTCCAAGTCTGTGGAAGGGTACGGAACACGGCTTCAGAAGGAACTGGAAGGCAAGAAAGGGTGGGTGGACCATTTATTTCATAGGGTTTGGCCTCCTGCTGCCATTAACTACCAGTTCTGGCCTAAAAATCCTCCTTCTTACAGGGAGGCCAGTGAGGAGTATGTGAATCATCTCCACAAGGTGGTGGACAAGTTGTTCAAGATGCTATCTTTAGGGTTGGGGATTGAAGGACACGAGTTAAAGAAGGCTGCTGGTGGGGATGACTTGGTTTACCTTCTAAAAATAAATTATTACCCCCCATGTCCCCGCCCTGACCTTGCTCTTGGGGTTGTGGCTCATACTGACATGTCAGCACTCACCATTCTTGTTCCCAACGATGTTCAAGGCCTCCAAGCATGCAGGGATGACCATTGGTACGATGTTAAGTACATCCCTAATGCCCTTGTCATCCACATTGGTGATCAAATGGAGATAATGAGCAATGGAAGGTACAAAAGTGTGCTGCATAGAACGACGGTGAATAAAGAGAAAGCAAGACTCTCGTGGCCAGTTTTCATGGAGCCTCCACAGGAGCACGTAGTAGGGCCTCTCTCACAGCTTGTGAACGACGAGAATCCACCTAAGTACAAGTCCAAGAAGTTTGGCGAGTATTGTTACTGCAAGCTCAACAAGATTCCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

335

Amino Acids

38.29

Weight (kDa)

6.07

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	43 - 150	5.6e-24	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	199 - 295	1.8e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08640 AT5G08640 AT5G43935 AT5G63580 AT5G63580
fragaria_vesca	FvH4_2g26440
malus_domestica	MD08G1121600.v1.1 MD08G1168600.v1.1 MD15G1354100.v1.1
prunus_persica	Prupe.1G502700_v2.0.a1 Prupe.1G502800_v2.0.a1
pyrus_communis	pycom08g14410
rosa_chinensis	RchiOBHm_Chr6g0295121
rosa_laevigata	RLG00000011819
rosa_multiflora	Rmu_sc0002096.1_g000020
rosa_roxburghii	Rroxscaffold_7G00172710
rosa_rugosa	Rorug06G0249300
rosa_samantha	Rh6AG362300 Rh6BG370000 Rh6CG376600 Rh6DG363100
rosa_wichuraiana	Rw6G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	502
AciI	CCGC	2 cut(s)	59, 628
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	866
AcuI	CTGAAG	1 cut(s)	338
AdeI	CACNNNGTG	1 cut(s)	502
AfaI	GTAC	7 cut(s)	105, 206, 341, 737, 749, 812, 947
AfiI	CCNNNNNNNGG	3 cut(s)	108, 196, 502
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	4 cut(s)	36, 520, 548, 704
AjnI	CCWGG	3 cut(s)	88, 117, 147
AleI	CACNNNNGTG	1 cut(s)	777
AloI	GAACNNNNNNTCC	2 cut(s)	500, 532
AluBI	AGCT	3 cut(s)	280, 919, 985
AluI	AGCT	3 cut(s)	280, 919, 985
Alw21I	GWGCWC	1 cut(s)	897
AlwI	GGATC	1 cut(s)	157
AoxI	GGCC	7 cut(s)	237, 410, 440, 468, 706, 866, 905
ApeKI	GCWGC	3 cut(s)	419, 569, 823
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	2 cut(s)	388, 905
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	670, 791, 850
AvaII	GGWCC	1 cut(s)	388
BaeGI	GKGCMC	1 cut(s)	128
BaeI	ACNNNNGTAYC	2 cut(s)	802, 835
BalI	TGGCCA	1 cut(s)	868
BauI	CACGAG	2 cut(s)	554, 862
Bbv12I	GWGCWC	1 cut(s)	897
BbvI	GCAGC	3 cut(s)	406, 556, 810
BceAI	ACGGC	2 cut(s)	174, 365
BcgI	CGANNNNNNTGC	2 cut(s)	843, 877
BciT130I	CCWGG	3 cut(s)	90, 119, 149
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	56
BisI	GCNGC	3 cut(s)	420, 570, 824
BlsI	GCNGC	3 cut(s)	421, 571, 825
Bme1390I	CCNGG	4 cut(s)	56, 90, 119, 149
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	388, 905
BmiI	GGNNCC	1 cut(s)	882
BmrFI	CCNGG	4 cut(s)	56, 90, 119, 149
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	2 cut(s)	153, 513
BmuI	ACTGGG	1 cut(s)	205
BpmI	CTGGAG	2 cut(s)	140, 300
BpuMI	CCSGG	1 cut(s)	56
BsaAI	YACGTR	1 cut(s)	898
BsaJI	CCNNGG	2 cut(s)	42, 117
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 196, 502
Bse1I	ACTGG	5 cut(s)	200, 369, 433, 471, 869
Bse3DI	GCAATG	2 cut(s)	27, 808
BseBI	CCWGG	3 cut(s)	90, 119, 149
BseDI	CCNNGG	2 cut(s)	42, 117
BseGI	GGATG	5 cut(s)	144, 586, 730, 750, 768
BseLI	CCNNNNNNNGG	3 cut(s)	108, 196, 502
BseMI	GCAATG	2 cut(s)	27, 808
BseNI	ACTGG	5 cut(s)	200, 369, 433, 471, 869
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	3 cut(s)	406, 556, 810
BshFI	GGCC	7 cut(s)	239, 412, 442, 470, 708, 868, 907
BsiHKAI	GWGCWC	1 cut(s)	897
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	2 cut(s)	124, 609
BslI	CCNNNNNNNGG	3 cut(s)	108, 196, 502
BsmFI	GGGAC	2 cut(s)	124, 609
BsnI	GGCC	7 cut(s)	239, 412, 442, 470, 708, 868, 907
Bsp1286I	GDGCHC	2 cut(s)	128, 897
Bsp143I	GATC	2 cut(s)	162, 781
BspACI	CCGC	2 cut(s)	59, 628
BspANI	GGCC	7 cut(s)	239, 412, 442, 470, 708, 868, 907
BspLI	GGNNCC	1 cut(s)	882
BspPI	GGATC	1 cut(s)	157
BsrDI	GCAATG	2 cut(s)	27, 808
BsrI	ACTGG	5 cut(s)	200, 369, 433, 471, 869
BssECI	CCNNGG	2 cut(s)	42, 117
BssMI	GATC	2 cut(s)	162, 781
BssSI	CACGAG	2 cut(s)	554, 862
BssT1I	CCWWGG	1 cut(s)	42
Bst2BI	CACGAG	2 cut(s)	554, 862
Bst2UI	CCWGG	3 cut(s)	90, 119, 149
Bst4CI	ACNGT	3 cut(s)	103, 838, 1002
BstBAI	YACGTR	1 cut(s)	898
BstC8I	GCNNGC	4 cut(s)	6, 187, 718, 983
BstDEI	CTNAG	1 cut(s)	942
BstF5I	GGATG	5 cut(s)	144, 586, 730, 750, 768
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	165, 784
BstMBI	GATC	2 cut(s)	162, 781
BstNI	CCWGG	3 cut(s)	90, 119, 149
BstNSI	RCATGY	4 cut(s)	8, 205, 670, 720
BstSCI	CCNGG	4 cut(s)	54, 88, 117, 147
BstSLI	GKGCMC	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	406, 556, 810
BstX2I	RGATCY	1 cut(s)	162
BstXI	CCANNNNNNTGG	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	7 cut(s)	239, 412, 442, 470, 708, 868, 907
BtsCI	GGATG	5 cut(s)	144, 586, 730, 750, 768
BtsIMutI	CAGTG	1 cut(s)	478
Cac8I	GCNNGC	4 cut(s)	6, 187, 718, 983
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	388, 905
Csp6I	GTAC	7 cut(s)	104, 205, 340, 736, 748, 811, 946
CviAII	CATG	9 cut(s)	5, 11, 107, 202, 221, 621, 667, 717, 877
CviQI	GTAC	7 cut(s)	104, 205, 340, 736, 748, 811, 946
DdeI	CTNAG	1 cut(s)	942
DpnI	GATC	2 cut(s)	164, 783
DpnII	GATC	2 cut(s)	162, 781
DraIII	CACNNNGTG	1 cut(s)	502
EaeI	YGGCCR	1 cut(s)	866
EciI	GGCGGA	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	708
Eco47I	GGWCC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	905
EcoRII	CCWGG	3 cut(s)	88, 117, 147
EcoT14I	CCWWGG	1 cut(s)	42
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	9 cut(s)	8, 14, 110, 205, 224, 624, 670, 720, 880
FaqI	GGGAC	2 cut(s)	124, 609
FatI	CATG	9 cut(s)	4, 10, 106, 201, 220, 620, 666, 716, 876
FauI	CCCGC	1 cut(s)	635
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	3 cut(s)	420, 570, 824
FokI	GGATG	5 cut(s)	131, 593, 737, 737, 755
Fsp4HI	GCNGC	3 cut(s)	420, 570, 824
FspAI	RTGCGCAY	1 cut(s)	9
FspI	TGCGCA	1 cut(s)	9
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	3 cut(s)	420, 570, 824
GsuI	CTGGAG	2 cut(s)	140, 300
HaeIII	GGCC	7 cut(s)	239, 412, 442, 470, 708, 868, 907
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	9 cut(s)	8, 14, 110, 205, 224, 624, 670, 720, 880
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	6 cut(s)	93, 320, 487, 858, 934, 994
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	3 cut(s)	670, 791, 850
Hpy166II	GTNNAC	6 cut(s)	217, 304, 388, 508, 592, 925
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	2 cut(s)	317, 520
Hpy8I	GTNNAC	6 cut(s)	217, 304, 388, 508, 592, 925
Hpy99I	CGWCG	2 cut(s)	838, 932
HpyAV	CCTTC	8 cut(s)	329, 352, 362, 465, 542, 559, 605, 801
HpyCH4III	ACNGT	3 cut(s)	103, 838, 1002
HpyCH4IV	ACGT	1 cut(s)	897
HpyCH4V	TGCA	6 cut(s)	4, 22, 253, 720, 826, 981
HpyF3I	CTNAG	1 cut(s)	942
HpySE526I	ACGT	1 cut(s)	897
Hsp92II	CATG	9 cut(s)	8, 14, 110, 205, 224, 624, 670, 720, 880
HspAI	GCGC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	2 cut(s)	162, 781
LmnI	GCTCC	2 cut(s)	880, 892
Lsp1109I	GCAGC	3 cut(s)	406, 556, 810
LweI	GCATC	2 cut(s)	153, 513
MaeII	ACGT	1 cut(s)	897
MaeIII	GTNAC	2 cut(s)	191, 974
MalI	GATC	2 cut(s)	164, 783
MboI	GATC	2 cut(s)	162, 781
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	2 cut(s)	128, 897
MlsI	TGGCCA	1 cut(s)	868
MluCI	AATT	2 cut(s)	174, 607
MluNI	TGGCCA	1 cut(s)	868
MlyI	GAGTC	1 cut(s)	852
Mox20I	TGGCCA	1 cut(s)	868
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	868
MseI	TTAA	3 cut(s)	426, 560, 744
MslI	CAYNNNNRTG	2 cut(s)	9, 777
Msp20I	TGGCCA	1 cut(s)	868
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	4 cut(s)	56, 90, 119, 149
MvaI	CCWGG	3 cut(s)	90, 119, 149
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	162, 781
NlaIII	CATG	9 cut(s)	8, 14, 110, 205, 224, 624, 670, 720, 880
NlaIV	GGNNCC	1 cut(s)	882
NmuCI	GTSAC	1 cut(s)	191
NsbI	TGCGCA	1 cut(s)	9
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	4 cut(s)	8, 205, 670, 720
OliI	CACNNNNGTG	1 cut(s)	777
PaeI	GCATGC	2 cut(s)	8, 720
PceI	AGGCCT	1 cut(s)	708
PciI	ACATGT	1 cut(s)	666
PfeI	GAWTC	5 cut(s)	93, 320, 487, 934, 994
PflMI	CCANNNNNTGG	1 cut(s)	502
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	3 cut(s)	421, 571, 825
PleI	GAGTC	1 cut(s)	852
PpsI	GAGTC	1 cut(s)	852
Ppu21I	YACGTR	1 cut(s)	898
PscI	ACATGT	1 cut(s)	666
Psp6I	CCWGG	3 cut(s)	88, 117, 147
PspGI	CCWGG	3 cut(s)	88, 117, 147
PspN4I	GGNNCC	1 cut(s)	882
PspPI	GGNCC	2 cut(s)	388, 905
PsuI	RGATCY	1 cut(s)	162
RsaI	GTAC	7 cut(s)	105, 206, 341, 737, 749, 812, 947
RsaNI	GTAC	7 cut(s)	104, 205, 340, 736, 748, 811, 946
RseI	CAYNNNNRTG	2 cut(s)	9, 777
SaqAI	TTAA	3 cut(s)	426, 560, 744
SatI	GCNGC	3 cut(s)	420, 570, 824
Sau3AI	GATC	2 cut(s)	162, 781
Sau96I	GGNCC	2 cut(s)	388, 905
SchI	GAGTC	1 cut(s)	852
ScrFI	CCNGG	4 cut(s)	56, 90, 119, 149
SduI	GDGCHC	2 cut(s)	128, 897
SfaNI	GCATC	2 cut(s)	153, 513
SinI	GGWCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	2 cut(s)	9, 777
SphI	GCATGC	2 cut(s)	8, 720
Sse9I	AATT	2 cut(s)	174, 607
SseBI	AGGCCT	1 cut(s)	708
SsiI	CCGC	2 cut(s)	59, 628
StuI	AGGCCT	1 cut(s)	708
StyD4I	CCNGG	4 cut(s)	54, 88, 117, 147
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	3 cut(s)	103, 838, 1002
TaiI	ACGT	1 cut(s)	900
TaqI	TCGA	1 cut(s)	180
TasI	AATT	2 cut(s)	174, 607
TatI	WGTACW	2 cut(s)	747, 945
TfiI	GAWTC	5 cut(s)	93, 320, 487, 934, 994
Tru1I	TTAA	3 cut(s)	426, 560, 744
Tru9I	TTAA	3 cut(s)	426, 560, 744
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	3 cut(s)	419, 569, 823
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	4 cut(s)	55, 171, 389, 865
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	478
Van91I	CCANNNNNTGG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	388
XceI	RCATGY	4 cut(s)	8, 205, 670, 720
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.