Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009163

Physical Location & Seq

Genomic Coordinates Forward (+)

11151868 .. 11158461

Gene Structure 6594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1121600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGAGTGGAGTCTGTGAAAAGAGAACGCGAAAGCAATGAGGGTACAATCCCAGCTGAGTTCATTAGGTCGGAGAACGAGCAACCGGGAATCGCAACCGTTCATGGGAAAGTCTTGGAAGTACCAACAATTGATTTCAGTGACCCTGATGAGGAAAAGCTCATCGTCCAAATTACTGAGGCCAGCTCCAACTGGGGCATGTACCAGATAGTGAACCACGACATTCCCAGCGAGGTCATAAGCAAATTGCAGGCTGTTGGGAAGGAGTTTTTTGAGCTTCCACAGGAGGAAAAGGAGGCTTATGCTAAGCCTCCGGACTCCGGCTCAATAGAAGGCTATGGGACAAAGCTCTTCAAGGAAATTTCTGAAGGCGGCATTACGAAGAAAGGGTGGGTGGACAATCTGTTCAATAAGATTTGGCCTCCATCTGTTATTAATTACCAGTTCTGGCCTAAGAACCCACCTTCTTACAGGGAAGCTAATAAGGAGTATGCTAAGCATATGCACAAGGTGGTGGAAAAACTGTTTAGGCTGCTATCTTTAGGGTTAGGGCTTGAAGGACAAGAGTTAAGGAAGGCTGCTGGTGGTGATAACTTGGAGTACCTTCTCAAAATTAACTACTACCCACCATGTCCTCGCCCTGATCTTGCCCTTGGAGTGGTGGCTCACACCGACATGTCCACCGTCACCATTCTCGTCCCCAACGATGTTCAGGGCCTCCAGGCTTGCAAAGATGGCCGGTGGTATGACGTTAAGTACATCCCTAATGCCCTTGTCATCCACATTGGTGATCAGATGGAGATAATGAGCAATGGAAAGTACAAGAGTGTCCTACACAGGACCACTGTGAACAAGGATAAGACAAGAATCTCATGGCCTGTGTTCTTGGAGCCGCCAGCAGACCACGTTGTAGGTCCTCATCCACGGTTTGTGAACCCCGTTAATCCACCAAAGTACAAGACCAAGAAGTACGGCGACTATGTTTACTGTAAGATTAACAAGCATCCCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

338

Amino Acids

38.2

Weight (kDa)

6.57

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	41 - 152	8.8e-24	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	201 - 298	4.5e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08640 AT5G08640 AT5G43935 AT5G63580 AT5G63580
fragaria_vesca	FvH4_2g26440
malus_domestica	MD08G1121600.v1.1 MD08G1168600.v1.1 MD15G1354100.v1.1
prunus_persica	Prupe.1G502700_v2.0.a1 Prupe.1G502800_v2.0.a1
pyrus_communis	pycom08g14410
rosa_chinensis	RchiOBHm_Chr6g0295121
rosa_laevigata	RLG00000011819
rosa_multiflora	Rmu_sc0002096.1_g000020
rosa_roxburghii	Rroxscaffold_7G00172710
rosa_rugosa	Rorug06G0249300
rosa_samantha	Rh6AG362300 Rh6BG370000 Rh6CG376600 Rh6DG363100
rosa_wichuraiana	Rw6G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	30
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	2 cut(s)	372, 893
AcoI	YGGCCR	1 cut(s)	736
AcsI	RAATTY	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	387
AdeI	CACNNNGTG	1 cut(s)	511
AfaI	GTAC	8 cut(s)	46, 123, 203, 602, 758, 821, 956, 971
AfiI	CCNNNNNNNGG	4 cut(s)	105, 151, 320, 658
AflIII	ACRYGT	1 cut(s)	675
AgsI	TTSAA	3 cut(s)	355, 409, 557
AjnI	CCWGG	1 cut(s)	720
AleI	CACNNNNGTG	1 cut(s)	786
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
AluBI	AGCT	6 cut(s)	56, 160, 186, 277, 349, 479
AluI	AGCT	6 cut(s)	56, 160, 186, 277, 349, 479
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	6 cut(s)	180, 419, 449, 715, 736, 875
ApeKI	GCWGC	2 cut(s)	532, 578
ApoI	RAATTY	1 cut(s)	360
AseI	ATTAAT	1 cut(s)	435
AspS9I	GGNCC	3 cut(s)	715, 840, 914
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	3 cut(s)	599, 679, 800
AvaII	GGWCC	2 cut(s)	840, 914
BbvI	GCAGC	2 cut(s)	519, 565
BccI	CCATC	3 cut(s)	433, 728, 790
BceAI	ACGGC	1 cut(s)	988
BciT130I	CCWGG	1 cut(s)	722
BclI	TGATCA	1 cut(s)	790
BcnI	CCSGG	1 cut(s)	87
BisI	GCNGC	4 cut(s)	373, 533, 579, 893
BlpI	GCTNAGC	2 cut(s)	306, 495
BlsI	GCNGC	4 cut(s)	374, 534, 580, 894
Bme1390I	CCNGG	2 cut(s)	87, 722
Bme18I	GGWCC	2 cut(s)	840, 914
BmgT120I	GGNCC	3 cut(s)	715, 840, 914
BmiI	GGNNCC	1 cut(s)	891
BmrFI	CCNGG	2 cut(s)	87, 722
BmrI	ACTGGG	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpmI	CTGGAG	1 cut(s)	704
Bpu1102I	GCTNAGC	2 cut(s)	306, 495
BpuMI	CCSGG	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	652, 923
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 151, 320, 658
Bse118I	RCCGGY	1 cut(s)	738
Bse1I	ACTGG	2 cut(s)	197, 442
Bse3DI	GCAATG	2 cut(s)	43, 817
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	722
BseDI	CCNNGG	2 cut(s)	652, 923
BseGI	GGATG	4 cut(s)	759, 777, 919, 1003
BseLI	CCNNNNNNNGG	4 cut(s)	105, 151, 320, 658
BseMI	GCAATG	2 cut(s)	43, 817
BseMII	CTCAG	2 cut(s)	48, 168
BseNI	ACTGG	2 cut(s)	197, 442
BseXI	GCAGC	2 cut(s)	519, 565
BseYI	CCCAGC	2 cut(s)	52, 227
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	6 cut(s)	182, 421, 451, 717, 738, 877
BsiSI	CCGG	4 cut(s)	86, 314, 321, 739
BslFI	GGGAC	2 cut(s)	355, 683
BslI	CCNNNNNNNGG	4 cut(s)	105, 151, 320, 658
BsmFI	GGGAC	2 cut(s)	355, 683
BsnI	GGCC	6 cut(s)	182, 421, 451, 717, 738, 877
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	643, 790
Bsp1720I	GCTNAGC	2 cut(s)	306, 495
BspACI	CCGC	2 cut(s)	372, 893
BspANI	GGCC	6 cut(s)	182, 421, 451, 717, 738, 877
BspCNI	CTCAG	2 cut(s)	49, 169
BspEI	TCCGGA	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	891
BspQI	GCTCTTC	1 cut(s)	356
BsrDI	GCAATG	2 cut(s)	43, 817
BsrFI	RCCGGY	1 cut(s)	738
BsrI	ACTGG	2 cut(s)	197, 442
BssAI	RCCGGY	1 cut(s)	738
BssECI	CCNNGG	2 cut(s)	652, 923
BssMI	GATC	2 cut(s)	643, 790
BssT1I	CCWWGG	1 cut(s)	652
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	6 cut(s)	100, 525, 685, 847, 927, 989
Bst6I	CTCTTC	1 cut(s)	356
BstC8I	GCNNGC	4 cut(s)	184, 252, 727, 897
BstDEI	CTNAG	5 cut(s)	57, 177, 306, 453, 495
BstDSI	CCRYGG	1 cut(s)	923
BstF5I	GGATG	4 cut(s)	759, 777, 919, 1003
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	2 cut(s)	646, 793
BstMBI	GATC	2 cut(s)	643, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	735
BstNI	CCWGG	1 cut(s)	722
BstNSI	RCATGY	2 cut(s)	202, 679
BstSCI	CCNGG	2 cut(s)	85, 720
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	519, 565
BsuRI	GGCC	6 cut(s)	182, 421, 451, 717, 738, 877
BtgI	CCRYGG	1 cut(s)	923
BtsCI	GGATG	4 cut(s)	759, 777, 919, 1003
BtsIMutI	CAGTG	2 cut(s)	145, 843
Cac8I	GCNNGC	4 cut(s)	184, 252, 727, 897
Cfr10I	RCCGGY	1 cut(s)	738
Cfr13I	GGNCC	3 cut(s)	715, 840, 914
Csp6I	GTAC	8 cut(s)	45, 122, 202, 601, 757, 820, 955, 970
CviAII	CATG	5 cut(s)	104, 199, 630, 676, 873
CviQI	GTAC	8 cut(s)	45, 122, 202, 601, 757, 820, 955, 970
DdeI	CTNAG	5 cut(s)	57, 177, 306, 453, 495
DpnI	GATC	2 cut(s)	645, 792
DpnII	GATC	2 cut(s)	643, 790
DraIII	CACNNNGTG	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	736
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	652
Eco47I	GGWCC	2 cut(s)	840, 914
Eco57I	CTGAAG	1 cut(s)	387
EcoO109I	RGGNCCY	2 cut(s)	715, 914
EcoRII	CCWGG	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	652
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	5 cut(s)	107, 202, 633, 679, 876
FaqI	GGGAC	2 cut(s)	355, 683
FatI	CATG	5 cut(s)	103, 198, 629, 675, 872
FauNDI	CATATG	1 cut(s)	501
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	4 cut(s)	373, 533, 579, 893
FokI	GGATG	4 cut(s)	746, 764, 906, 990
Fsp4HI	GCNGC	4 cut(s)	373, 533, 579, 893
GluI	GCNGC	4 cut(s)	373, 533, 579, 893
GsaI	CCCAGC	2 cut(s)	56, 231
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	6 cut(s)	182, 421, 451, 717, 738, 877
HapII	CCGG	4 cut(s)	86, 314, 321, 739
Hin1II	CATG	5 cut(s)	107, 202, 633, 679, 876
HinfI	GANTC	4 cut(s)	11, 90, 317, 867
HpaII	CCGG	4 cut(s)	86, 314, 321, 739
HphI	GGTGA	3 cut(s)	599, 679, 800
Hpy166II	GTNNAC	6 cut(s)	214, 397, 681, 850, 934, 985
Hpy188I	TCNGA	3 cut(s)	73, 367, 795
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	6 cut(s)	214, 397, 681, 850, 934, 985
HpyAV	CCTTC	7 cut(s)	256, 326, 362, 474, 551, 568, 614
HpyCH4III	ACNGT	6 cut(s)	100, 525, 685, 847, 927, 989
HpyCH4IV	ACGT	2 cut(s)	750, 906
HpyCH4V	TGCA	3 cut(s)	250, 505, 729
HpyF10VI	GCNNNNNNNGC	1 cut(s)	735
HpyF3I	CTNAG	5 cut(s)	57, 177, 306, 453, 495
HpySE526I	ACGT	2 cut(s)	750, 906
Hsp92II	CATG	5 cut(s)	107, 202, 633, 679, 876
Kpn2I	TCCGGA	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	2 cut(s)	643, 790
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	2 cut(s)	191, 889
Lsp1109I	GCAGC	2 cut(s)	519, 565
MaeII	ACGT	2 cut(s)	750, 906
MaeIII	GTNAC	2 cut(s)	140, 685
MalI	GATC	2 cut(s)	645, 792
MboI	GATC	2 cut(s)	643, 790
MboII	GAAGA	2 cut(s)	343, 394
MfeI	CAATTG	1 cut(s)	129
MluCI	AATT	6 cut(s)	129, 171, 245, 360, 436, 612
MlyI	GAGTC	2 cut(s)	20, 311
MmeI	TCCRAC	2 cut(s)	51, 213
MroI	TCCGGA	1 cut(s)	313
MseI	TTAA	6 cut(s)	435, 569, 615, 753, 942, 996
MslI	CAYNNNNRTG	2 cut(s)	674, 786
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	4 cut(s)	86, 314, 321, 739
MspR9I	CCNGG	2 cut(s)	87, 722
MunI	CAATTG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	722
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	735
NciI	CCSGG	1 cut(s)	87
NdeI	CATATG	1 cut(s)	501
NdeII	GATC	2 cut(s)	643, 790
NlaIII	CATG	5 cut(s)	107, 202, 633, 679, 876
NlaIV	GGNNCC	1 cut(s)	891
NmuCI	GTSAC	2 cut(s)	140, 685
NspI	RCATGY	2 cut(s)	202, 679
OliI	CACNNNNGTG	1 cut(s)	786
PciI	ACATGT	1 cut(s)	675
PciSI	GCTCTTC	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	702
PfeI	GAWTC	2 cut(s)	90, 867
PkrI	GCNGC	4 cut(s)	374, 534, 580, 894
PleI	GAGTC	2 cut(s)	19, 311
PpsI	GAGTC	2 cut(s)	19, 311
PpuMI	RGGWCCY	1 cut(s)	914
PscI	ACATGT	1 cut(s)	675
PshBI	ATTAAT	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	914
Psp6I	CCWGG	1 cut(s)	720
PspFI	CCCAGC	2 cut(s)	52, 227
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	1 cut(s)	891
PspPI	GGNCC	3 cut(s)	715, 840, 914
PspPPI	RGGWCCY	1 cut(s)	914
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	8 cut(s)	46, 123, 203, 602, 758, 821, 956, 971
RsaNI	GTAC	8 cut(s)	45, 122, 202, 601, 757, 820, 955, 970
RseI	CAYNNNNRTG	2 cut(s)	674, 786
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	6 cut(s)	435, 569, 615, 753, 942, 996
SatI	GCNGC	4 cut(s)	373, 533, 579, 893
Sau3AI	GATC	2 cut(s)	643, 790
Sau96I	GGNCC	3 cut(s)	715, 840, 914
SchI	GAGTC	2 cut(s)	20, 311
ScrFI	CCNGG	2 cut(s)	87, 722
SinI	GGWCC	2 cut(s)	840, 914
SmiMI	CAYNNNNRTG	2 cut(s)	674, 786
Sse9I	AATT	6 cut(s)	129, 171, 245, 360, 436, 612
SsiI	CCGC	2 cut(s)	372, 893
StyD4I	CCNGG	2 cut(s)	85, 720
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	6 cut(s)	100, 525, 685, 847, 927, 989
TaiI	ACGT	2 cut(s)	753, 909
TasI	AATT	6 cut(s)	129, 171, 245, 360, 436, 612
TatI	WGTACW	3 cut(s)	756, 819, 954
TauI	GCSGC	2 cut(s)	375, 895
TfiI	GAWTC	2 cut(s)	90, 867
Tru1I	TTAA	6 cut(s)	435, 569, 615, 753, 942, 996
Tru9I	TTAA	6 cut(s)	435, 569, 615, 753, 942, 996
TscAI	CASTG	2 cut(s)	145, 850
TseFI	GTSAC	2 cut(s)	140, 685
TseI	GCWGC	2 cut(s)	532, 578
Tsp45I	GTSAC	2 cut(s)	140, 685
TspDTI	ATGAA	2 cut(s)	52, 92
TspRI	CASTG	2 cut(s)	145, 850
VpaK11BI	GGWCC	2 cut(s)	840, 914
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	1 cut(s)	360
XceI	RCATGY	2 cut(s)	202, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.